BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645510|ref|NP_207685.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(90 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207685.1| (NC_000915) conserved hypothetical protein... 183 3e-46
ref|NP_223549.1| (NC_000921) putative [Helicobacter pylori ... 179 6e-45
gb|AAM22653.1|AF469112_8 (AF469112) unknown [Helicobacter p... 100 3e-21
gb|AAM22665.1|AF469113_5 (AF469113) unknown [Helicobacter p... 96 8e-20
ref|NP_207687.1| (NC_000915) conserved hypothetical protein... 96 1e-19
ref|NP_223543.1| (NC_000921) putative [Helicobacter pylori ... 84 3e-16
gb|AAM75239.1|AF454824_33 (AF454824) EF0033 [Enterococcus f... 80 5e-15
ref|NP_357847.1| (NC_003098) Conserved hypothetical protein... 75 2e-13
ref|NP_344814.1| (NC_003028) conserved hypothetical protein... 72 2e-12
ref|NP_232719.1| (NC_002506) conserved hypothetical protein... 70 5e-12
ref|NP_299359.1| (NC_002488) conserved hypothetical protein... 69 1e-11
gb|AAF23803.1|AF213822_18 (AF213822) hypothetical protein [... 68 2e-11
ref|NP_053145.1| (NC_002144) ORF10 [Yersinia pestis] >gi|61... 64 4e-10
ref|NP_531632.1| (NC_003304) conserved hypothetical protein... 63 8e-10
ref|NP_353954.1| (NC_003062) AGR_C_1701p [Agrobacterium tum... 63 8e-10
ref|NP_414760.1| (NC_000913) orf, hypothetical protein [Esc... 61 3e-09
ref|NP_308279.1| (NC_002695) hypothetical protein [Escheric... 59 9e-09
ref|NP_462419.1| (NC_003197) putative cytoplasmic protein [... 57 6e-08
gb|AAD33113.1|AF094574_3 (AF094574) unknown [Haemophilus in... 53 8e-07
ref|NP_438869.1| (NC_000907) conserved hypothetical protein... 52 2e-06
ref|NP_285942.1| (NC_002655) Z0284 gene product [Escherichi... 51 2e-06
ref|NP_542207.1| (NC_003320) hypothetical protein [Lactobac... 43 8e-04
ref|NP_488511.1| (NC_003272) hypothetical protein [Nostoc s... 42 0.001
>ref|NP_207685.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||D64631 conserved hypothetical protein HP0892 - Helicobacter pylori
(strain 26695)
gb|AAD07941.1| (AE000599) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 90
Score = 183 bits (465), Expect = 3e-46
Identities = 90/90 (100%), Positives = 90/90 (100%)
Query: 1 MLTIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPLAPKYKDHPLKGGLKDFRECH 60
MLTIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPLAPKYKDHPLKGGLKDFRECH
Sbjct: 1 MLTIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPLAPKYKDHPLKGGLKDFRECH 60
Query: 61 LKPDLLLVYQIKKQENTLFLVRLGSHSELF 90
LKPDLLLVYQIKKQENTLFLVRLGSHSELF
Sbjct: 61 LKPDLLLVYQIKKQENTLFLVRLGSHSELF 90
>ref|NP_223549.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71883 hypothetical protein jhp0831 - Helicobacter pylori (strain J99)
gb|AAD06411.1| (AE001512) putative [Helicobacter pylori J99]
Length = 90
Score = 179 bits (454), Expect = 6e-45
Identities = 88/90 (97%), Positives = 88/90 (97%)
Query: 1 MLTIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPLAPKYKDHPLKGGLKDFRECH 60
MLTIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPL PKYKDHPLKG LKDFRECH
Sbjct: 1 MLTIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPLEPKYKDHPLKGALKDFRECH 60
Query: 61 LKPDLLLVYQIKKQENTLFLVRLGSHSELF 90
LKPDLLLVYQIKKQENTLFLVRLGSHSELF
Sbjct: 61 LKPDLLLVYQIKKQENTLFLVRLGSHSELF 90
>gb|AAM22653.1|AF469112_8 (AF469112) unknown [Helicobacter pylori]
Length = 88
Score = 100 bits (250), Expect = 3e-21
Identities = 54/90 (60%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
Query: 1 MLTIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPLAPKYKDHPLKGGLKDFRECH 60
ML IE F KD K +KNGFD KLL +VV L ++PLAP YKDH LKG RECH
Sbjct: 1 MLDIEYHNMFRKDYKKYLKNGFDSKLLDEVVLELRQQKPLAPNYKDHILKGEWYPCRECH 60
Query: 61 LKPDLLLVYQIKKQENTLFLVRLGSHSELF 90
++PD+LLVY +K NTL+L+RLGSHSELF
Sbjct: 61 IRPDVLLVYIVK--NNTLWLLRLGSHSELF 88
>gb|AAM22665.1|AF469113_5 (AF469113) unknown [Helicobacter pylori]
Length = 88
Score = 95.9 bits (237), Expect = 8e-20
Identities = 52/90 (57%), Positives = 63/90 (69%), Gaps = 2/90 (2%)
Query: 1 MLTIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPLAPKYKDHPLKGGLKDFRECH 60
ML IE F KD K +KNGFD KLL +VV L ++ L PKYKDH LKG RECH
Sbjct: 1 MLDIEYHNLFRKDYKKYLKNGFDSKLLDEVVLELRQQKSLDPKYKDHMLKGEWYPCRECH 60
Query: 61 LKPDLLLVYQIKKQENTLFLVRLGSHSELF 90
+KP++LLVY ++ NTL+L+RLGSHSELF
Sbjct: 61 IKPNILLVYIVR--NNTLWLLRLGSHSELF 88
>ref|NP_207687.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||F64631 conserved hypothetical protein HP0894 - Helicobacter pylori
(strain 26695)
gb|AAD07942.1| (AE000599) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 88
Score = 95.5 bits (236), Expect = 1e-19
Identities = 48/90 (53%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
Query: 1 MLTIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPLAPKYKDHPLKGGLKDFRECH 60
ML + K F KD L+ NGFD +L +V+ L ++PL P+++DH LKG K FRECH
Sbjct: 1 MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKKEPLDPQFQDHALKGKWKPFRECH 60
Query: 61 LKPDLLLVYQIKKQENTLFLVRLGSHSELF 90
+KPD+LLVY +K E L L+RLGSHSELF
Sbjct: 61 IKPDVLLVYLVKDDE--LILLRLGSHSELF 88
>ref|NP_223543.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71882 hypothetical protein jhp0825 - Helicobacter pylori (strain J99)
gb|AAD06402.1| (AE001512) putative [Helicobacter pylori J99]
Length = 100
Score = 84.0 bits (206), Expect = 3e-16
Identities = 49/91 (53%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 1 MLTIETSKKFDKDLKILVKNG-FDLKLLYKVVGNLATEQPLAPKYKDHPLKGGLKDFREC 59
ML IE KKF KDLK + N +L++ VV NL + PL ++KDH L G K RE
Sbjct: 1 MLEIELKKKFTKDLKKHILNQKIELEVFDLVVENLRNQIPLDKRFKDHALSGTYKGCRER 60
Query: 60 HLKPDLLLVYQIKKQENTLFLVRLGSHSELF 90
H+KPD+LLVY++K N L LVRLGSHSELF
Sbjct: 61 HIKPDVLLVYRVK--GNVLTLVRLGSHSELF 89
>gb|AAM75239.1|AF454824_33 (AF454824) EF0033 [Enterococcus faecalis]
Length = 91
Score = 80.1 bits (196), Expect = 5e-15
Identities = 43/90 (47%), Positives = 56/90 (61%)
Query: 1 MLTIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPLAPKYKDHPLKGGLKDFRECH 60
ML I + +F KD K K G +L+ L +V+ L +Q L PKYKDH L G RECH
Sbjct: 1 MLEIFYTNQFKKDFKKAKKQGKNLEKLKEVLVLLQEQQTLPPKYKDHALTGNYIGTRECH 60
Query: 61 LKPDLLLVYQIKKQENTLFLVRLGSHSELF 90
++PD LL+Y+I + L L R+GSHSELF
Sbjct: 61 IEPDWLLIYKIDGDKLILTLARIGSHSELF 90
>ref|NP_357847.1| (NC_003098) Conserved hypothetical protein [Streptococcus
pneumoniae R6]
gb|AAK99057.1| (AE008407) Conserved hypothetical protein [Streptococcus
pneumoniae R6]
Length = 92
Score = 75.1 bits (183), Expect = 2e-13
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 1 MLTIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPLAPKYKDHPLKGG--LKDFRE 58
ML I K+F KD K+ +K G +LL +V+ L E+ +Y+DH L + RE
Sbjct: 1 MLKIRYHKQFKKDFKLAMKRGLKAELLEEVLNFLVQEKEHPARYRDHSLTASKHFQGVRE 60
Query: 59 CHLKPDLLLVYQIKKQENTLFLVRLGSHSELF 90
CH +PD LLVY++ K E L L+R GSHS+LF
Sbjct: 61 CHTQPDWLLVYKVDKSELILNLLRTGSHSDLF 92
>ref|NP_344814.1| (NC_003028) conserved hypothetical protein [Streptococcus
pneumoniae TIGR4]
gb|AAK74454.1| (AE007341) conserved hypothetical protein [Streptococcus
pneumoniae TIGR4]
Length = 92
Score = 71.6 bits (174), Expect = 2e-12
Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 1 MLTIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPLAPKYKDHPLKGG--LKDFRE 58
ML I K+F KD K+ +K G +LL +V+ L E+ + +DH L + RE
Sbjct: 1 MLKIRYHKQFKKDFKLAMKRGLKAELLEEVLNFLVQEKEHPARNRDHSLTASKHFQGVRE 60
Query: 59 CHLKPDLLLVYQIKKQENTLFLVRLGSHSELF 90
CH +PD LLVY++ K E L L+R GSHS+LF
Sbjct: 61 CHTQPDWLLVYKVDKSELILNLLRTGSHSDLF 92
>ref|NP_232719.1| (NC_002506) conserved hypothetical protein [Vibrio cholerae]
pir||E82475 conserved hypothetical protein VCA0323 [imported] - Vibrio
cholerae (group O1 strain N16961)
gb|AAF96231.1| (AE004370) conserved hypothetical protein [Vibrio cholerae]
Length = 98
Score = 70.1 bits (170), Expect = 5e-12
Identities = 38/91 (41%), Positives = 54/91 (58%), Gaps = 3/91 (3%)
Query: 1 MLTIETSKKFDKDLKILVKNGF-DLKLLYKVVGNLATEQPLAPKYKDHPLKGGLKDFREC 59
M +E S +F KD K + K D+ + V+ L + L PK DHPL G FR+C
Sbjct: 10 MYKLEYSTQFKKDFKKITKMPISDIIEVGNVISKLQRGEKLEPKNVDHPLTGNWVGFRDC 69
Query: 60 HLKPDLLLVYQIKKQENTLFLVRLGSHSELF 90
H+KPDL+L+Y++ + L L R+GSHS+LF
Sbjct: 70 HIKPDLVLIYRVFNDQ--LQLARIGSHSDLF 98
>ref|NP_299359.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||G82603 conserved hypothetical protein XF2080 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF84879.1|AE004023_15 (AE004023) conserved hypothetical protein [Xylella fastidiosa
9a5c]
Length = 93
Score = 68.9 bits (167), Expect = 1e-11
Identities = 40/92 (43%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Query: 1 MLTIETSKKFDKDLKILVKNGFDLKL---LYKVVGNLATEQPLAPKYKDHPLKGGLKDFR 57
M I+ +F +DLK K L L V+ LA + PL P+++DH L G KD R
Sbjct: 1 MREIKQLGQFKRDLKREAKGQHRATLEDDLLPVIDALAKDMPLEPRHRDHALLGNWKDLR 60
Query: 58 ECHLKPDLLLVYQIKKQENTLFLVRLGSHSEL 89
+CH+K DL+L+Y + TL LVRLGSH+EL
Sbjct: 61 DCHIKLDLVLIY-TRVDSKTLTLVRLGSHAEL 91
>gb|AAF23803.1|AF213822_18 (AF213822) hypothetical protein [Zymomonas mobilis]
Length = 89
Score = 67.8 bits (164), Expect = 2e-11
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 6/92 (6%)
Query: 1 MLTIETSKKFDKDLKILVKN--GFDLKLLYKVVGNLATEQPLAPKYKDHPLKGGLKDFRE 58
M + ++F KD K KN F +++ L + L PKYKDH L G FR+
Sbjct: 1 MRKVLLERQFKKDAK---KNFLEFVTPAWAEILNCLCQDVELPPKYKDHALSGNWLGFRD 57
Query: 59 CHLKPDLLLVYQIKKQENTLFLVRLGSHSELF 90
CH+KPDL+L+Y +K ++ + LVRLGSHSELF
Sbjct: 58 CHVKPDLVLIY-MKNGDDYVQLVRLGSHSELF 88
>ref|NP_053145.1| (NC_002144) ORF10 [Yersinia pestis]
gb|AAF05106.1|AF152923_10 (AF152923) ORF10 [Yersinia pestis]
Length = 92
Score = 63.9 bits (154), Expect = 4e-10
Identities = 35/88 (39%), Positives = 53/88 (59%), Gaps = 3/88 (3%)
Query: 4 IETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQ-PLAPKYKDHPLKGGLKDFRECHLK 62
IE S +F KD+K K D+ L ++ L + PL+ YKDHPL+G K +R+ H++
Sbjct: 7 IEYSGQFQKDVKKAQKRHKDMSKLKTLMTLLINDDLPLSSVYKDHPLQGNFKGYRDAHIE 66
Query: 63 PDLLLVYQIKKQENTLFLVRLGSHSELF 90
PD LL+Y+I + L R G+H++LF
Sbjct: 67 PDWLLIYKI--TDELLRFERTGTHADLF 92
>ref|NP_531632.1| (NC_003304) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAL41948.1| (AE009058) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 99
Score = 62.8 bits (151), Expect = 8e-10
Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 7 SKKFDKDLKILVKNG-FDLKLLYKVVGNL-ATEQPLAPKYKDHPLKGGLKDFRECHLKPD 64
+K+F KD + L +G +D+ L +++ L A PL +++DH L G +D RECH+ D
Sbjct: 13 TKQFIKDWQRLNNSGRYDMVRLKEIMLLLIANGAPLPTQFRDHELTGDWRDHRECHVGGD 72
Query: 65 LLLVYQIKKQENTLFLVRLGSHSELF 90
LL+Y + +++N L R G+H+ELF
Sbjct: 73 FLLIYTVDEKQNLLIFTRAGTHAELF 98
>ref|NP_353954.1| (NC_003062) AGR_C_1701p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK86739.1| (AE008024) AGR_C_1701p [Agrobacterium tumefaciens str. C58
(Cereon)]
Length = 111
Score = 62.8 bits (151), Expect = 8e-10
Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 7 SKKFDKDLKILVKNG-FDLKLLYKVVGNL-ATEQPLAPKYKDHPLKGGLKDFRECHLKPD 64
+K+F KD + L +G +D+ L +++ L A PL +++DH L G +D RECH+ D
Sbjct: 25 TKQFIKDWQRLNNSGRYDMVRLKEIMLLLIANGAPLPTQFRDHELTGDWRDHRECHVGGD 84
Query: 65 LLLVYQIKKQENTLFLVRLGSHSELF 90
LL+Y + +++N L R G+H+ELF
Sbjct: 85 FLLIYTVDEKQNLLIFTRAGTHAELF 110
>ref|NP_414760.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|Q47149|YAFQ_ECOLI Hypothetical protein yafQ
pir||B64747 yafQ protein - Escherichia coli
dbj|BAA07587.1| (D38582) YafQ [Escherichia coli]
gb|AAC73329.1| (AE000131) orf, hypothetical protein [Escherichia coli K12]
dbj|BAA77895.1| (D83536) Hypothetical protein HI0711 [Escherichia coli]
Length = 92
Score = 60.8 bits (146), Expect = 3e-09
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 4 IETSKKFDKDLKILVKNGFDL-KLLYKVVGNLATEQPLAPKYKDHPLKGGLKDFRECHLK 62
IE S ++ KD+K+ K D+ KL Y + + PL YKDHPL+G K +R+ H++
Sbjct: 6 IEYSGQYSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVE 65
Query: 63 PDLLLVYQIKKQENTLFLVRLGSHSELF 90
PD +L+Y K + L R G+H+ LF
Sbjct: 66 PDWILIY--KLTDKLLRFERTGTHAALF 91
>ref|NP_308279.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
dbj|BAB33675.1| (AP002551) hypothetical protein [Escherichia coli O157:H7]
Length = 86
Score = 59.3 bits (142), Expect = 9e-09
Identities = 33/85 (38%), Positives = 49/85 (56%), Gaps = 3/85 (3%)
Query: 7 SKKFDKDLKILVKNGFDL-KLLYKVVGNLATEQPLAPKYKDHPLKGGLKDFRECHLKPDL 65
S +F KD+K+ K D+ KL Y + + PL YKDHPL+G K +R+ H++PD
Sbjct: 3 SGQFSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDW 62
Query: 66 LLVYQIKKQENTLFLVRLGSHSELF 90
+L+Y K + L R G+H+ LF
Sbjct: 63 ILIY--KLTDKLLRFERTGTHAALF 85
>ref|NP_462419.1| (NC_003197) putative cytoplasmic protein [Salmonella typhimurium
LT2]
gb|AAL22378.1| (AE008862) putative cytoplasmic protein [Salmonella typhimurium
LT2]
Length = 91
Score = 56.6 bits (135), Expect = 6e-08
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 4 IETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQ-PLAPKYKDHPLKGGLKDFRECHLK 62
IE S +F KD+K K D+ L ++ L PL YKDHPL+G +R+ H++
Sbjct: 6 IEYSGQFQKDVKRAQKRHKDVGKLKTLMTLLIHHPFPLPAIYKDHPLQGSYSGYRDAHIE 65
Query: 63 PDLLLVYQIKKQENTLFLVRLGSHSELF 90
PD +L+Y+I + L R G+H++LF
Sbjct: 66 PDWILIYKI--TDECLRFERTGTHADLF 91
>gb|AAD33113.1|AF094574_3 (AF094574) unknown [Haemophilus influenzae]
Length = 102
Score = 52.8 bits (125), Expect = 8e-07
Identities = 32/92 (34%), Positives = 51/92 (54%), Gaps = 5/92 (5%)
Query: 2 LTIETSKKFDKDLKILVKNGFDLKLLYKVVGN---LATEQPLAPKYKDHPLKGGLKDFRE 58
L + SK+F +DL L K ++ + K + L PL Y+DH L G K +R+
Sbjct: 7 LKVSYSKQFVRDLTDLAKRSPNVLIGSKYITAIYCLLNRLPLPENYQDHALVGEWKGYRD 66
Query: 59 CHLKPDLLLVYQ--IKKQENTLFLVRLGSHSE 88
CH++ DL+L+YQ I+ + + L RL +HS+
Sbjct: 67 CHIQGDLVLIYQYVIQDEFDELKFSRLNTHSQ 98
>ref|NP_438869.1| (NC_000907) conserved hypothetical protein [Haemophilus
influenzae Rd]
sp|P44041|YAFQ_HAEIN Hypothetical protein HI0711
pir||E64012 hypothetical protein HI0711 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC22368.1| (U32754) conserved hypothetical protein [Haemophilus influenzae
Rd]
Length = 102
Score = 51.6 bits (122), Expect = 2e-06
Identities = 32/92 (34%), Positives = 50/92 (53%), Gaps = 5/92 (5%)
Query: 2 LTIETSKKFDKDLKILVKNGFDLKLLYKVVGN---LATEQPLAPKYKDHPLKGGLKDFRE 58
L + SK+F +DL L K ++ + K + L PL Y+DH L G K +R+
Sbjct: 7 LKVSYSKQFVRDLTDLAKRSPNVLIGSKYITAIHCLLNRLPLPENYQDHALVGEWKGYRD 66
Query: 59 CHLKPDLLLVYQ--IKKQENTLFLVRLGSHSE 88
CH++ DL+L+YQ I+ + + L RL HS+
Sbjct: 67 CHIQGDLVLIYQYVIQDEFDELKFSRLNIHSQ 98
>ref|NP_285942.1| (NC_002655) Z0284 gene product [Escherichia coli O157:H7 EDL933]
gb|AAG54550.1|AE005201_3 (AE005201) Z0284 gene product [Escherichia coli O157:H7 EDL933]
Length = 67
Score = 51.2 bits (121), Expect = 2e-06
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 25 KLLYKVVGNLATEQPLAPKYKDHPLKGGLKDFRECHLKPDLLLVYQIKKQENTLFLVRLG 84
KL Y + + PL YKDHPL+G K +R+ H++PD +L+Y K + L R G
Sbjct: 3 KLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWILIY--KLTDKLLRFERTG 60
Query: 85 SHSELF 90
+H+ LF
Sbjct: 61 THAALF 66
>ref|NP_542207.1| (NC_003320) hypothetical protein [Lactobacillus casei]
gb|AAL54848.1| (AF200347) hypothetical protein [Lactobacillus casei]
Length = 118
Score = 42.7 bits (99), Expect = 8e-04
Identities = 30/95 (31%), Positives = 46/95 (47%), Gaps = 16/95 (16%)
Query: 10 FDKDLKILVKNGFDLKLLYKV---VGNLATEQPLAPKYKDHPLKGGLKDFRECHLKP--- 63
F+ DLK L D ++ +V + L +Q L +++DH L + + E HL+
Sbjct: 12 FNADLKRLAS--LDKSIIDEVRAAIDLLLEQQQLPSEFEDHELNRRMSGYNEFHLRDTPK 69
Query: 64 --------DLLLVYQIKKQENTLFLVRLGSHSELF 90
D+L+VY I K E L +R+GSH LF
Sbjct: 70 NKTPSETNDVLVVYTIDKDELVLIGIRVGSHDRLF 104
>ref|NP_488511.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB76170.1| (AP003596) ORF_ID:asr4471~hypothetical protein [Nostoc sp. PCC
7120]
Length = 94
Score = 42.0 bits (97), Expect = 0.001
Identities = 26/94 (27%), Positives = 40/94 (41%), Gaps = 4/94 (4%)
Query: 1 MLTIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPLAPKYKDHPLKGGLKDFRECH 60
M+ + S F + K ++K LK V L + P K H L G L C
Sbjct: 1 MMEVVWSSGFKRSFKKIIKKKPQLKDQIVKVLRLLADDPFTTSLKSHKLTGDLAGLWSCS 60
Query: 61 LKPDLLLVYQIKKQENTL----FLVRLGSHSELF 90
+ D +++ + EN L LV +GSH E++
Sbjct: 61 VTYDCRIIFTFSEDENLLEMVILLVDIGSHDEVY 94
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.321 0.143 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,907,389
Number of Sequences: 1026957
Number of extensions: 2129593
Number of successful extensions: 3572
Number of sequences better than 1.0e-02: 23
Number of HSP's better than 0.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3540
Number of HSP's gapped (non-prelim): 23
length of query: 90
length of database: 324,149,939
effective HSP length: 66
effective length of query: 24
effective length of database: 256,370,777
effective search space: 6152898648
effective search space used: 6152898648
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 90 (39.3 bits)