BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645511|ref|NP_207686.1| hypothetical protein
[Helicobacter pylori 26695]
         (95 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207686.1|  (NC_000915) hypothetical protein [Helicoba...   191  2e-48
ref|NP_223550.1|  (NC_000921) putative [Helicobacter pylori ...   183  4e-46
ref|NP_223548.1|  (NC_000921) putative [Helicobacter pylori ...    49  9e-06
ref|NP_207114.1|  (NC_000915) hypothetical protein [Helicoba...    44  4e-04
ref|NP_207688.1|  (NC_000915) hypothetical protein [Helicoba...    44  5e-04

>ref|NP_207686.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||E64631 hypothetical protein HP0893 - Helicobacter pylori (strain 26695)
 gb|AAD07948.1| (AE000599) H. pylori predicted coding region HP0893 [Helicobacter
          pylori 26695]
          Length = 95

 Score =  191 bits (484), Expect = 2e-48
 Identities = 95/95 (100%), Positives = 95/95 (100%)

Query: 1  MPNTTNKDYTKYSQRQLFSFLNSIKTKQKRALEKLKEIQAQKQRIKKALQFKALNLTENG 60
          MPNTTNKDYTKYSQRQLFSFLNSIKTKQKRALEKLKEIQAQKQRIKKALQFKALNLTENG
Sbjct: 1  MPNTTNKDYTKYSQRQLFSFLNSIKTKQKRALEKLKEIQAQKQRIKKALQFKALNLTENG 60

Query: 61 YTIEEEREILARAKDTKNRLCFKSIEDFKKHCENL 95
          YTIEEEREILARAKDTKNRLCFKSIEDFKKHCENL
Sbjct: 61 YTIEEEREILARAKDTKNRLCFKSIEDFKKHCENL 95



>ref|NP_223550.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||C71883 hypothetical protein jhp0832 - Helicobacter pylori (strain J99)
 gb|AAD06412.1| (AE001512) putative [Helicobacter pylori J99]
          Length = 95

 Score =  183 bits (464), Expect = 4e-46
 Identities = 90/95 (94%), Positives = 93/95 (97%)

Query: 1  MPNTTNKDYTKYSQRQLFSFLNSIKTKQKRALEKLKEIQAQKQRIKKALQFKALNLTENG 60
          MPNTTNKDYTKYSQ+QLF+FLNSIK KQKRALEKLKEIQ QKQRIKKALQFKAL+LTENG
Sbjct: 1  MPNTTNKDYTKYSQKQLFNFLNSIKAKQKRALEKLKEIQTQKQRIKKALQFKALHLTENG 60

Query: 61 YTIEEEREILARAKDTKNRLCFKSIEDFKKHCENL 95
          YTIEEEREILARAKDTKNRLCFKSIEDFKKHCENL
Sbjct: 61 YTIEEEREILARAKDTKNRLCFKSIEDFKKHCENL 95



>ref|NP_223548.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71883 hypothetical protein jhp0830 - Helicobacter pylori (strain J99)
 gb|AAD06407.1| (AE001512) putative [Helicobacter pylori J99]
          Length = 83

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 10/68 (14%)

Query: 1  MPNTTNKDYTKYSQRQLFSFLNSIKTKQKRALE---------KLKEIQAQKQRIKKALQF 51
          MPNTTNKDYTKYSQ+QLF+ +N ++ K  +A +         ++  ++ Q Q I+ AL  
Sbjct: 1  MPNTTNKDYTKYSQKQLFNLINQLEQKISQAFDDKRGCCLGHEIPNLETQ-QAIRGALNG 59

Query: 52 KALNLTEN 59
          + L + E+
Sbjct: 60 ENLEVIED 67



>ref|NP_207114.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||D64559 hypothetical protein HP0316 - Helicobacter pylori (strain 26695)
 gb|AAD07385.1| (AE000549) H. pylori predicted coding region HP0316 [Helicobacter
          pylori 26695]
          Length = 130

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 26/82 (31%), Positives = 47/82 (56%), Gaps = 4/82 (4%)

Query: 1  MPNTT-NKDYTKYSQRQLFSFLNSIKTKQKRALEKLKEIQAQKQRIKKALQFKALNLTEN 59
          MPNTT  KDYTKYS++QLF+ ++ ++ K K+      +  + K+++ K L+ +  N  + 
Sbjct: 1  MPNTTAKKDYTKYSEKQLFNLIHQLERKIKK---MQNDRISFKEKMAKELEKRDQNFKDK 57

Query: 60 GYTIEEEREILARAKDTKNRLC 81
             + E  + +++A D K   C
Sbjct: 58 IDALNELLQKISQAFDDKRDCC 79



>ref|NP_207688.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||G64631 hypothetical protein HP0895 - Helicobacter pylori (strain 26695)
 gb|AAD07949.1| (AE000599) H. pylori predicted coding region HP0895 [Helicobacter
          pylori 26695]
          Length = 125

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 26/82 (31%), Positives = 47/82 (56%), Gaps = 4/82 (4%)

Query: 1  MPNTT-NKDYTKYSQRQLFSFLNSIKTKQKRALEKLKEIQAQKQRIKKALQFKALNLTEN 59
          MPNTT  KDYTKYS++QLF+ ++ ++ K K+      +  + K+++ K L+ +  N  + 
Sbjct: 1  MPNTTAKKDYTKYSKKQLFNLIHQLERKIKK---MQNDRISFKEKMAKELEKRDQNFKDK 57

Query: 60 GYTIEEEREILARAKDTKNRLC 81
             + E  + +++A D K   C
Sbjct: 58 IDALNELLQKISQAFDDKRDCC 79



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.315    0.129    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,348,052
Number of Sequences: 1026957
Number of extensions: 1624202
Number of successful extensions: 10528
Number of sequences better than 1.0e-02: 5
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10525
Number of HSP's gapped (non-prelim): 5
length of query: 95
length of database: 324,149,939
effective HSP length: 71
effective length of query: 24
effective length of database: 251,235,992
effective search space: 6029663808
effective search space used: 6029663808
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 90 (39.3 bits)