BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645512|ref|NP_207687.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(88 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207687.1| (NC_000915) conserved hypothetical protein... 181 2e-45
gb|AAM22653.1|AF469112_8 (AF469112) unknown [Helicobacter p... 115 8e-26
gb|AAM22665.1|AF469113_5 (AF469113) unknown [Helicobacter p... 113 4e-25
ref|NP_223549.1| (NC_000921) putative [Helicobacter pylori ... 97 3e-20
ref|NP_207685.1| (NC_000915) conserved hypothetical protein... 96 1e-19
ref|NP_223543.1| (NC_000921) putative [Helicobacter pylori ... 91 2e-18
ref|NP_232719.1| (NC_002506) conserved hypothetical protein... 83 7e-16
gb|AAM75239.1|AF454824_33 (AF454824) EF0033 [Enterococcus f... 80 5e-15
gb|AAF23803.1|AF213822_18 (AF213822) hypothetical protein [... 77 4e-14
ref|NP_357847.1| (NC_003098) Conserved hypothetical protein... 67 4e-11
ref|NP_531632.1| (NC_003304) conserved hypothetical protein... 66 9e-11
ref|NP_353954.1| (NC_003062) AGR_C_1701p [Agrobacterium tum... 66 9e-11
ref|NP_299359.1| (NC_002488) conserved hypothetical protein... 65 2e-10
ref|NP_344814.1| (NC_003028) conserved hypothetical protein... 65 2e-10
gb|AAD33113.1|AF094574_3 (AF094574) unknown [Haemophilus in... 59 1e-08
ref|NP_053145.1| (NC_002144) ORF10 [Yersinia pestis] >gi|61... 58 2e-08
ref|NP_438869.1| (NC_000907) conserved hypothetical protein... 57 6e-08
ref|NP_308279.1| (NC_002695) hypothetical protein [Escheric... 53 8e-07
ref|NP_285942.1| (NC_002655) Z0284 gene product [Escherichi... 53 8e-07
ref|NP_414760.1| (NC_000913) orf, hypothetical protein [Esc... 53 8e-07
ref|NP_462419.1| (NC_003197) putative cytoplasmic protein [... 52 1e-06
ref|NP_542207.1| (NC_003320) hypothetical protein [Lactobac... 49 9e-06
>ref|NP_207687.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||F64631 conserved hypothetical protein HP0894 - Helicobacter pylori
(strain 26695)
gb|AAD07942.1| (AE000599) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 88
Score = 181 bits (458), Expect = 2e-45
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 1 MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKKEPLDPQFQDHALKGKWKPFRECH 60
MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKKEPLDPQFQDHALKGKWKPFRECH
Sbjct: 1 MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKKEPLDPQFQDHALKGKWKPFRECH 60
Query: 61 IKPDVLLVYLVKDDELILLRLGSHSELF 88
IKPDVLLVYLVKDDELILLRLGSHSELF
Sbjct: 61 IKPDVLLVYLVKDDELILLRLGSHSELF 88
>gb|AAM22653.1|AF469112_8 (AF469112) unknown [Helicobacter pylori]
Length = 88
Score = 115 bits (289), Expect = 8e-26
Identities = 53/88 (60%), Positives = 69/88 (78%)
Query: 1 MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKKEPLDPQFQDHALKGKWKPFRECH 60
ML + F+KD+ K L NGFD +L+EV+L LR+++PL P ++DH LKG+W P RECH
Sbjct: 1 MLDIEYHNMFRKDYKKYLKNGFDSKLLDEVVLELRQQKPLAPNYKDHILKGEWYPCRECH 60
Query: 61 IKPDVLLVYLVKDDELILLRLGSHSELF 88
I+PDVLLVY+VK++ L LLRLGSHSELF
Sbjct: 61 IRPDVLLVYIVKNNTLWLLRLGSHSELF 88
>gb|AAM22665.1|AF469113_5 (AF469113) unknown [Helicobacter pylori]
Length = 88
Score = 113 bits (283), Expect = 4e-25
Identities = 51/88 (57%), Positives = 70/88 (78%)
Query: 1 MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKKEPLDPQFQDHALKGKWKPFRECH 60
ML + F+KD+ K L NGFD +L+EV+L LR+++ LDP+++DH LKG+W P RECH
Sbjct: 1 MLDIEYHNLFRKDYKKYLKNGFDSKLLDEVVLELRQQKSLDPKYKDHMLKGEWYPCRECH 60
Query: 61 IKPDVLLVYLVKDDELILLRLGSHSELF 88
IKP++LLVY+V+++ L LLRLGSHSELF
Sbjct: 61 IKPNILLVYIVRNNTLWLLRLGSHSELF 88
>ref|NP_223549.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71883 hypothetical protein jhp0831 - Helicobacter pylori (strain J99)
gb|AAD06411.1| (AE001512) putative [Helicobacter pylori J99]
Length = 90
Score = 97.4 bits (241), Expect = 3e-20
Identities = 48/90 (53%), Positives = 63/90 (69%), Gaps = 2/90 (2%)
Query: 1 MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKKEPLDPQFQDHALKGKWKPFRECH 60
ML + K F KD L+ NGFD +L +V+ L ++PL+P+++DH LKG K FRECH
Sbjct: 1 MLTIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPLEPKYKDHPLKGALKDFRECH 60
Query: 61 IKPDVLLVYLVKDDE--LILLRLGSHSELF 88
+KPD+LLVY +K E L L+RLGSHSELF
Sbjct: 61 LKPDLLLVYQIKKQENTLFLVRLGSHSELF 90
>ref|NP_207685.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||D64631 conserved hypothetical protein HP0892 - Helicobacter pylori
(strain 26695)
gb|AAD07941.1| (AE000599) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 90
Score = 95.5 bits (236), Expect = 1e-19
Identities = 48/90 (53%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
Query: 1 MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKKEPLDPQFQDHALKGKWKPFRECH 60
ML + K F KD L+ NGFD +L +V+ L ++PL P+++DH LKG K FRECH
Sbjct: 1 MLTIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPLAPKYKDHPLKGGLKDFRECH 60
Query: 61 IKPDVLLVYLVKDDE--LILLRLGSHSELF 88
+KPD+LLVY +K E L L+RLGSHSELF
Sbjct: 61 LKPDLLLVYQIKKQENTLFLVRLGSHSELF 90
>ref|NP_223543.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71882 hypothetical protein jhp0825 - Helicobacter pylori (strain J99)
gb|AAD06402.1| (AE001512) putative [Helicobacter pylori J99]
Length = 100
Score = 91.3 bits (225), Expect = 2e-18
Identities = 50/89 (56%), Positives = 62/89 (69%), Gaps = 1/89 (1%)
Query: 1 MLKLNLKKSFQKDFDKLLLNG-FDDSVLNEVILTLRKKEPLDPQFQDHALKGKWKPFREC 59
ML++ LKK F KD K +LN + V + V+ LR + PLD +F+DHAL G +K RE
Sbjct: 1 MLEIELKKKFTKDLKKHILNQKIELEVFDLVVENLRNQIPLDKRFKDHALSGTYKGCRER 60
Query: 60 HIKPDVLLVYLVKDDELILLRLGSHSELF 88
HIKPDVLLVY VK + L L+RLGSHSELF
Sbjct: 61 HIKPDVLLVYRVKGNVLTLVRLGSHSELF 89
>ref|NP_232719.1| (NC_002506) conserved hypothetical protein [Vibrio cholerae]
pir||E82475 conserved hypothetical protein VCA0323 [imported] - Vibrio
cholerae (group O1 strain N16961)
gb|AAF96231.1| (AE004370) conserved hypothetical protein [Vibrio cholerae]
Length = 98
Score = 82.8 bits (203), Expect = 7e-16
Identities = 41/89 (46%), Positives = 57/89 (63%), Gaps = 1/89 (1%)
Query: 1 MLKLNLKKSFQKDFDKLLLNGFDDSV-LNEVILTLRKKEPLDPQFQDHALKGKWKPFREC 59
M KL F+KDF K+ D + + VI L++ E L+P+ DH L G W FR+C
Sbjct: 10 MYKLEYSTQFKKDFKKITKMPISDIIEVGNVISKLQRGEKLEPKNVDHPLTGNWVGFRDC 69
Query: 60 HIKPDVLLVYLVKDDELILLRLGSHSELF 88
HIKPD++L+Y V +D+L L R+GSHS+LF
Sbjct: 70 HIKPDLVLIYRVFNDQLQLARIGSHSDLF 98
>gb|AAM75239.1|AF454824_33 (AF454824) EF0033 [Enterococcus faecalis]
Length = 91
Score = 80.1 bits (196), Expect = 5e-15
Identities = 41/90 (45%), Positives = 60/90 (66%), Gaps = 2/90 (2%)
Query: 1 MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKKEPLDPQFQDHALKGKWKPFRECH 60
ML++ F+KDF K G + L EV++ L++++ L P+++DHAL G + RECH
Sbjct: 1 MLEIFYTNQFKKDFKKAKKQGKNLEKLKEVLVLLQEQQTLPPKYKDHALTGNYIGTRECH 60
Query: 61 IKPDVLLVYLVKDDELI--LLRLGSHSELF 88
I+PD LL+Y + D+LI L R+GSHSELF
Sbjct: 61 IEPDWLLIYKIDGDKLILTLARIGSHSELF 90
>gb|AAF23803.1|AF213822_18 (AF213822) hypothetical protein [Zymomonas mobilis]
Length = 89
Score = 77.0 bits (188), Expect = 4e-14
Identities = 39/89 (43%), Positives = 58/89 (64%), Gaps = 2/89 (2%)
Query: 1 MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKKEPLDPQFQDHALKGKWKPFRECH 60
M K+ L++ F+KD K L F E++ L + L P+++DHAL G W FR+CH
Sbjct: 1 MRKVLLERQFKKDAKKNFLE-FVTPAWAEILNCLCQDVELPPKYKDHALSGNWLGFRDCH 59
Query: 61 IKPDVLLVYLVKDDELI-LLRLGSHSELF 88
+KPD++L+Y+ D+ + L+RLGSHSELF
Sbjct: 60 VKPDLVLIYMKNGDDYVQLVRLGSHSELF 88
>ref|NP_357847.1| (NC_003098) Conserved hypothetical protein [Streptococcus
pneumoniae R6]
gb|AAK99057.1| (AE008407) Conserved hypothetical protein [Streptococcus
pneumoniae R6]
Length = 92
Score = 67.0 bits (162), Expect = 4e-11
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 4/92 (4%)
Query: 1 MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKKEPLDPQFQDHALKGK--WKPFRE 58
MLK+ K F+KDF + G +L EV+ L +++ +++DH+L ++ RE
Sbjct: 1 MLKIRYHKQFKKDFKLAMKRGLKAELLEEVLNFLVQEKEHPARYRDHSLTASKHFQGVRE 60
Query: 59 CHIKPDVLLVYLVKDDELI--LLRLGSHSELF 88
CH +PD LLVY V ELI LLR GSHS+LF
Sbjct: 61 CHTQPDWLLVYKVDKSELILNLLRTGSHSDLF 92
>ref|NP_531632.1| (NC_003304) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAL41948.1| (AE009058) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 99
Score = 65.9 bits (159), Expect = 9e-11
Identities = 39/85 (45%), Positives = 51/85 (59%), Gaps = 4/85 (4%)
Query: 8 KSFQKDFDKLLLNGFDDSV-LNEVILTL-RKKEPLDPQFQDHALKGKWKPFRECHIKPDV 65
K F KD+ +L +G D V L E++L L PL QF+DH L G W+ RECH+ D
Sbjct: 14 KQFIKDWQRLNNSGRYDMVRLKEIMLLLIANGAPLPTQFRDHELTGDWRDHRECHVGGDF 73
Query: 66 LLVYLV--KDDELILLRLGSHSELF 88
LL+Y V K + LI R G+H+ELF
Sbjct: 74 LLIYTVDEKQNLLIFTRAGTHAELF 98
>ref|NP_353954.1| (NC_003062) AGR_C_1701p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK86739.1| (AE008024) AGR_C_1701p [Agrobacterium tumefaciens str. C58
(Cereon)]
Length = 111
Score = 65.9 bits (159), Expect = 9e-11
Identities = 39/85 (45%), Positives = 51/85 (59%), Gaps = 4/85 (4%)
Query: 8 KSFQKDFDKLLLNGFDDSV-LNEVILTL-RKKEPLDPQFQDHALKGKWKPFRECHIKPDV 65
K F KD+ +L +G D V L E++L L PL QF+DH L G W+ RECH+ D
Sbjct: 26 KQFIKDWQRLNNSGRYDMVRLKEIMLLLIANGAPLPTQFRDHELTGDWRDHRECHVGGDF 85
Query: 66 LLVYLV--KDDELILLRLGSHSELF 88
LL+Y V K + LI R G+H+ELF
Sbjct: 86 LLIYTVDEKQNLLIFTRAGTHAELF 110
>ref|NP_299359.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||G82603 conserved hypothetical protein XF2080 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF84879.1|AE004023_15 (AE004023) conserved hypothetical protein [Xylella fastidiosa
9a5c]
Length = 93
Score = 65.1 bits (157), Expect = 2e-10
Identities = 32/59 (54%), Positives = 42/59 (70%), Gaps = 1/59 (1%)
Query: 30 VILTLRKKEPLDPQFQDHALKGKWKPFRECHIKPDVLLVYLVKDDE-LILLRLGSHSEL 87
VI L K PL+P+ +DHAL G WK R+CHIK D++L+Y D + L L+RLGSH+EL
Sbjct: 33 VIDALAKDMPLEPRHRDHALLGNWKDLRDCHIKLDLVLIYTRVDSKTLTLVRLGSHAEL 91
>ref|NP_344814.1| (NC_003028) conserved hypothetical protein [Streptococcus
pneumoniae TIGR4]
gb|AAK74454.1| (AE007341) conserved hypothetical protein [Streptococcus
pneumoniae TIGR4]
Length = 92
Score = 64.7 bits (156), Expect = 2e-10
Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Query: 1 MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKKEPLDPQFQDHALKGK--WKPFRE 58
MLK+ K F+KDF + G +L EV+ L +++ + +DH+L ++ RE
Sbjct: 1 MLKIRYHKQFKKDFKLAMKRGLKAELLEEVLNFLVQEKEHPARNRDHSLTASKHFQGVRE 60
Query: 59 CHIKPDVLLVYLVKDDELI--LLRLGSHSELF 88
CH +PD LLVY V ELI LLR GSHS+LF
Sbjct: 61 CHTQPDWLLVYKVDKSELILNLLRTGSHSDLF 92
>gb|AAD33113.1|AF094574_3 (AF094574) unknown [Haemophilus influenzae]
Length = 102
Score = 58.5 bits (140), Expect = 1e-08
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 2 LKLNLKKSFQKDFDKLLL---NGFDDSVLNEVILTLRKKEPLDPQFQDHALKGKWKPFRE 58
LK++ K F +D L N S I L + PL +QDHAL G+WK +R+
Sbjct: 7 LKVSYSKQFVRDLTDLAKRSPNVLIGSKYITAIYCLLNRLPLPENYQDHALVGEWKGYRD 66
Query: 59 CHIKPDVLLV--YLVKD--DELILLRLGSHSE 86
CHI+ D++L+ Y+++D DEL RL +HS+
Sbjct: 67 CHIQGDLVLIYQYVIQDEFDELKFSRLNTHSQ 98
>ref|NP_053145.1| (NC_002144) ORF10 [Yersinia pestis]
gb|AAF05106.1|AF152923_10 (AF152923) ORF10 [Yersinia pestis]
Length = 92
Score = 58.2 bits (139), Expect = 2e-08
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 10 FQKDFDKLLLNGFDDSVLNEVILTLRKKE-PLDPQFQDHALKGKWKPFRECHIKPDVLLV 68
FQKD K D S L ++ L + PL ++DH L+G +K +R+ HI+PD LL+
Sbjct: 13 FQKDVKKAQKRHKDMSKLKTLMTLLINDDLPLSSVYKDHPLQGNFKGYRDAHIEPDWLLI 72
Query: 69 YLVKDDELILLRLGSHSELF 88
Y + D+ L R G+H++LF
Sbjct: 73 YKITDELLRFERTGTHADLF 92
>ref|NP_438869.1| (NC_000907) conserved hypothetical protein [Haemophilus
influenzae Rd]
sp|P44041|YAFQ_HAEIN Hypothetical protein HI0711
pir||E64012 hypothetical protein HI0711 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC22368.1| (U32754) conserved hypothetical protein [Haemophilus influenzae
Rd]
Length = 102
Score = 56.6 bits (135), Expect = 6e-08
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 2 LKLNLKKSFQKDFDKLLL---NGFDDSVLNEVILTLRKKEPLDPQFQDHALKGKWKPFRE 58
LK++ K F +D L N S I L + PL +QDHAL G+WK +R+
Sbjct: 7 LKVSYSKQFVRDLTDLAKRSPNVLIGSKYITAIHCLLNRLPLPENYQDHALVGEWKGYRD 66
Query: 59 CHIKPDVLLV--YLVKD--DELILLRLGSHSE 86
CHI+ D++L+ Y+++D DEL RL HS+
Sbjct: 67 CHIQGDLVLIYQYVIQDEFDELKFSRLNIHSQ 98
>ref|NP_308279.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
dbj|BAB33675.1| (AP002551) hypothetical protein [Escherichia coli O157:H7]
Length = 86
Score = 52.8 bits (125), Expect = 8e-07
Identities = 22/57 (38%), Positives = 35/57 (60%)
Query: 32 LTLRKKEPLDPQFQDHALKGKWKPFRECHIKPDVLLVYLVKDDELILLRLGSHSELF 88
L + PL ++DH L+G WK +R+ H++PD +L+Y + D L R G+H+ LF
Sbjct: 29 LLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLRFERTGTHAALF 85
>ref|NP_285942.1| (NC_002655) Z0284 gene product [Escherichia coli O157:H7 EDL933]
gb|AAG54550.1|AE005201_3 (AE005201) Z0284 gene product [Escherichia coli O157:H7 EDL933]
Length = 67
Score = 52.8 bits (125), Expect = 8e-07
Identities = 22/57 (38%), Positives = 35/57 (60%)
Query: 32 LTLRKKEPLDPQFQDHALKGKWKPFRECHIKPDVLLVYLVKDDELILLRLGSHSELF 88
L + PL ++DH L+G WK +R+ H++PD +L+Y + D L R G+H+ LF
Sbjct: 10 LLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLRFERTGTHAALF 66
>ref|NP_414760.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|Q47149|YAFQ_ECOLI Hypothetical protein yafQ
pir||B64747 yafQ protein - Escherichia coli
dbj|BAA07587.1| (D38582) YafQ [Escherichia coli]
gb|AAC73329.1| (AE000131) orf, hypothetical protein [Escherichia coli K12]
dbj|BAA77895.1| (D83536) Hypothetical protein HI0711 [Escherichia coli]
Length = 92
Score = 52.8 bits (125), Expect = 8e-07
Identities = 22/57 (38%), Positives = 35/57 (60%)
Query: 32 LTLRKKEPLDPQFQDHALKGKWKPFRECHIKPDVLLVYLVKDDELILLRLGSHSELF 88
L + PL ++DH L+G WK +R+ H++PD +L+Y + D L R G+H+ LF
Sbjct: 35 LLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLRFERTGTHAALF 91
>ref|NP_462419.1| (NC_003197) putative cytoplasmic protein [Salmonella typhimurium
LT2]
gb|AAL22378.1| (AE008862) putative cytoplasmic protein [Salmonella typhimurium
LT2]
Length = 91
Score = 52.0 bits (123), Expect = 1e-06
Identities = 27/80 (33%), Positives = 45/80 (55%), Gaps = 1/80 (1%)
Query: 10 FQKDFDKLLLNGFDDSVLNEVI-LTLRKKEPLDPQFQDHALKGKWKPFRECHIKPDVLLV 68
FQKD + D L ++ L + PL ++DH L+G + +R+ HI+PD +L+
Sbjct: 12 FQKDVKRAQKRHKDVGKLKTLMTLLIHHPFPLPAIYKDHPLQGSYSGYRDAHIEPDWILI 71
Query: 69 YLVKDDELILLRLGSHSELF 88
Y + D+ L R G+H++LF
Sbjct: 72 YKITDECLRFERTGTHADLF 91
>ref|NP_542207.1| (NC_003320) hypothetical protein [Lactobacillus casei]
gb|AAL54848.1| (AF200347) hypothetical protein [Lactobacillus casei]
Length = 118
Score = 49.3 bits (116), Expect = 9e-06
Identities = 34/104 (32%), Positives = 52/104 (49%), Gaps = 16/104 (15%)
Query: 1 MLKLNLKKSFQKDFDKLLLNGFDDSVLNEV---ILTLRKKEPLDPQFQDHALKGKWKPFR 57
M KL K + D L D S+++EV I L +++ L +F+DH L + +
Sbjct: 1 MKKLRFKPRATFNADLKRLASLDKSIIDEVRAAIDLLLEQQQLPSEFEDHELNRRMSGYN 60
Query: 58 ECHIKP-----------DVLLVYLVKDDELIL--LRLGSHSELF 88
E H++ DVL+VY + DEL+L +R+GSH LF
Sbjct: 61 EFHLRDTPKNKTPSETNDVLVVYTIDKDELVLIGIRVGSHDRLF 104
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.324 0.145 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,347,600
Number of Sequences: 1026957
Number of extensions: 2064762
Number of successful extensions: 4486
Number of sequences better than 1.0e-02: 22
Number of HSP's better than 0.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4453
Number of HSP's gapped (non-prelim): 22
length of query: 88
length of database: 324,149,939
effective HSP length: 64
effective length of query: 24
effective length of database: 258,424,691
effective search space: 6202192584
effective search space used: 6202192584
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 90 (39.3 bits)