BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645513|ref|NP_207688.1| hypothetical protein
[Helicobacter pylori 26695]
(125 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207688.1| (NC_000915) hypothetical protein [Helicoba... 251 1e-66
ref|NP_207114.1| (NC_000915) hypothetical protein [Helicoba... 199 4e-51
ref|NP_223548.1| (NC_000921) putative [Helicobacter pylori ... 100 5e-21
ref|NP_223550.1| (NC_000921) putative [Helicobacter pylori ... 45 1e-04
ref|NP_207686.1| (NC_000915) hypothetical protein [Helicoba... 44 4e-04
>ref|NP_207688.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64631 hypothetical protein HP0895 - Helicobacter pylori (strain 26695)
gb|AAD07949.1| (AE000599) H. pylori predicted coding region HP0895 [Helicobacter
pylori 26695]
Length = 125
Score = 251 bits (641), Expect = 1e-66
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MPNTTAKKDYTKYSKKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDA 60
MPNTTAKKDYTKYSKKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDA
Sbjct: 1 MPNTTAKKDYTKYSKKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDA 60
Query: 61 LNELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDVGNKETDLIVEDFSSYSNERKRALG 120
LNELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDVGNKETDLIVEDFSSYSNERKRALG
Sbjct: 61 LNELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDVGNKETDLIVEDFSSYSNERKRALG 120
Query: 121 VEAQS 125
VEAQS
Sbjct: 121 VEAQS 125
>ref|NP_207114.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64559 hypothetical protein HP0316 - Helicobacter pylori (strain 26695)
gb|AAD07385.1| (AE000549) H. pylori predicted coding region HP0316 [Helicobacter
pylori 26695]
Length = 130
Score = 199 bits (507), Expect = 4e-51
Identities = 99/117 (84%), Positives = 104/117 (88%)
Query: 1 MPNTTAKKDYTKYSKKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDA 60
MPNTTAKKDYTKYS+KQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDA
Sbjct: 1 MPNTTAKKDYTKYSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDA 60
Query: 61 LNELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDVGNKETDLIVEDFSSYSNERKR 117
LNELLQKISQAFDDKRDCCLGHEIPNIETQQAMRD N ++ ++NE KR
Sbjct: 61 LNELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDALNGINLTQIDSLDDFTNELKR 117
>ref|NP_223548.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71883 hypothetical protein jhp0830 - Helicobacter pylori (strain J99)
gb|AAD06407.1| (AE001512) putative [Helicobacter pylori J99]
Length = 83
Score = 99.8 bits (247), Expect = 5e-21
Identities = 58/122 (47%), Positives = 69/122 (56%), Gaps = 40/122 (32%)
Query: 1 MPNTTAKKDYTKYSKKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDA 60
MPNTT KDYTKYS+KQLFNLI+QLE
Sbjct: 1 MPNTT-NKDYTKYSQKQLFNLINQLE---------------------------------- 25
Query: 61 LNELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDVGNKETDLIVEDFSSYSNERKRALG 120
QKISQAFDDKR CCLGHEIPN+ETQQA+R N E ++EDFS+++NE K+ +
Sbjct: 26 -----QKISQAFDDKRGCCLGHEIPNLETQQAIRGALNGENLEVIEDFSAWANEIKKEVN 80
Query: 121 VE 122
E
Sbjct: 81 AE 82
>ref|NP_223550.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71883 hypothetical protein jhp0832 - Helicobacter pylori (strain J99)
gb|AAD06412.1| (AE001512) putative [Helicobacter pylori J99]
Length = 95
Score = 45.1 bits (105), Expect = 1e-04
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 12/86 (13%)
Query: 1 MPNTTAKKDYTKYSKKQLFNLIHQLE-------RKIKKMQNDRISFKEKMAKELEKRDQN 53
MPNTT KDYTKYS+KQLFN ++ ++ K+K++Q K+++ K L+ + +
Sbjct: 1 MPNTT-NKDYTKYSQKQLFNFLNSIKAKQKRALEKLKEIQTQ----KQRIKKALQFKALH 55
Query: 54 FKDKIDALNELLQKISQAFDDKRDCC 79
+ + E + +++A D K C
Sbjct: 56 LTENGYTIEEEREILARAKDTKNRLC 81
>ref|NP_207686.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||E64631 hypothetical protein HP0893 - Helicobacter pylori (strain 26695)
gb|AAD07948.1| (AE000599) H. pylori predicted coding region HP0893 [Helicobacter
pylori 26695]
Length = 95
Score = 43.5 bits (101), Expect = 4e-04
Identities = 26/82 (31%), Positives = 47/82 (56%), Gaps = 4/82 (4%)
Query: 1 MPNTTAKKDYTKYSKKQLFNLIHQLERKIKK---MQNDRISFKEKMAKELEKRDQNFKDK 57
MPNTT KDYTKYS++QLF+ ++ ++ K K+ + + K+++ K L+ + N +
Sbjct: 1 MPNTT-NKDYTKYSQRQLFSFLNSIKTKQKRALEKLKEIQAQKQRIKKALQFKALNLTEN 59
Query: 58 IDALNELLQKISQAFDDKRDCC 79
+ E + +++A D K C
Sbjct: 60 GYTIEEEREILARAKDTKNRLC 81
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.313 0.130 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,468,114
Number of Sequences: 1026957
Number of extensions: 2618453
Number of successful extensions: 15326
Number of sequences better than 1.0e-02: 5
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15322
Number of HSP's gapped (non-prelim): 6
length of query: 125
length of database: 324,149,939
effective HSP length: 101
effective length of query: 24
effective length of database: 220,427,282
effective search space: 5290254768
effective search space used: 5290254768
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 90 (39.3 bits)