BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645515|ref|NP_207690.1| hypothetical protein
[Helicobacter pylori 26695]
         (208 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207690.1|  (NC_000915) hypothetical protein [Helicoba...   421  e-117

>ref|NP_207690.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64632 hypothetical protein HP0897 - Helicobacter pylori (strain 26695)
 gb|AAD07950.1| (AE000599) H. pylori predicted coding region HP0897 [Helicobacter
           pylori 26695]
          Length = 208

 Score =  421 bits (1082), Expect = e-117
 Identities = 208/208 (100%), Positives = 208/208 (100%)

Query: 1   MPGPKPGALPLGDTPKTKESIIQKLFKKVKLKRYNFIMENGFDPIIYKRYLKKKETFLLF 60
           MPGPKPGALPLGDTPKTKESIIQKLFKKVKLKRYNFIMENGFDPIIYKRYLKKKETFLLF
Sbjct: 1   MPGPKPGALPLGDTPKTKESIIQKLFKKVKLKRYNFIMENGFDPIIYKRYLKKKETFLLF 60

Query: 61  KKIAQASAFKNLKLQLKRREIINRYVSQALGDLKKGFRYAKVEHQILKIYFTHPSYLKAF 120
           KKIAQASAFKNLKLQLKRREIINRYVSQALGDLKKGFRYAKVEHQILKIYFTHPSYLKAF
Sbjct: 61  KKIAQASAFKNLKLQLKRREIINRYVSQALGDLKKGFRYAKVEHQILKIYFTHPSYLKAF 120

Query: 121 KIEEAYYTNHLKAHLKETQKTLKALDYPFDFKTIQASVKKRAYQKPVVKKEKPPKSVNVN 180
           KIEEAYYTNHLKAHLKETQKTLKALDYPFDFKTIQASVKKRAYQKPVVKKEKPPKSVNVN
Sbjct: 121 KIEEAYYTNHLKAHLKETQKTLKALDYPFDFKTIQASVKKRAYQKPVVKKEKPPKSVNVN 180

Query: 181 CEGLSDFTKKQFLKLKRACNDNTLRTPP 208
           CEGLSDFTKKQFLKLKRACNDNTLRTPP
Sbjct: 181 CEGLSDFTKKQFLKLKRACNDNTLRTPP 208



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.319    0.137    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,389,608
Number of Sequences: 1026957
Number of extensions: 5336857
Number of successful extensions: 13889
Number of sequences better than 1.0e-02: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13888
Number of HSP's gapped (non-prelim): 1
length of query: 208
length of database: 324,149,939
effective HSP length: 116
effective length of query: 92
effective length of database: 205,022,927
effective search space: 18862109284
effective search space used: 18862109284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 94 (40.8 bits)