BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645520|ref|NP_207695.1| hypothetical protein
[Helicobacter pylori 26695]
(99 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207695.1| (NC_000915) hypothetical protein [Helicoba... 195 7e-50
ref|NP_223557.1| (NC_000921) putative [Helicobacter pylori ... 179 7e-45
ref|NP_281922.1| (NC_002163) hypothetical protein Cj0761 [C... 86 6e-17
ref|NP_213642.1| (NC_000918) putative protein [Aquifex aeol... 57 3e-08
ref|NP_632387.1| (NC_003901) hypothetical protein [Methanos... 45 2e-04
gb|AAG09973.1|AF248038_2 (AF248038) acetate kinase [Strepto... 44 3e-04
ref|NP_604202.1| (NC_003454) Hypothetical cytosolic protein... 44 5e-04
ref|NP_618056.1| (NC_003552) predicted protein [Methanosarc... 43 8e-04
ref|NP_628848.1| (NC_003888) hypothetical protein SCD31.14 ... 42 0.002
ref|NP_601256.1| (NC_003450) COG1917:Uncharacterized ACR, d... 40 0.004
>ref|NP_207695.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64632 hypothetical protein HP0902 - Helicobacter pylori (strain 26695)
gb|AAD07951.1| (AE000599) H. pylori predicted coding region HP0902 [Helicobacter
pylori 26695]
Length = 99
Score = 195 bits (496), Expect = 7e-50
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 1 MEVVHFLEGVCFEKLHIEVLNENSSHKEIRICMPKGAVMDKHKAPGAISVQVLEGKIVFE 60
MEVVHFLEGVCFEKLHIEVLNENSSHKEIRICMPKGAVMDKHKAPGAISVQVLEGKIVFE
Sbjct: 1 MEVVHFLEGVCFEKLHIEVLNENSSHKEIRICMPKGAVMDKHKAPGAISVQVLEGKIVFE 60
Query: 61 VGDEKIEMPKGALISLEAQVLHRLDALENSVIRLSLSKK 99
VGDEKIEMPKGALISLEAQVLHRLDALENSVIRLSLSKK
Sbjct: 61 VGDEKIEMPKGALISLEAQVLHRLDALENSVIRLSLSKK 99
>ref|NP_223557.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71881 hypothetical protein jhp0839 - Helicobacter pylori (strain J99)
gb|AAD06417.1| (AE001513) putative [Helicobacter pylori J99]
Length = 99
Score = 179 bits (453), Expect = 7e-45
Identities = 91/99 (91%), Positives = 95/99 (95%)
Query: 1 MEVVHFLEGVCFEKLHIEVLNENSSHKEIRICMPKGAVMDKHKAPGAISVQVLEGKIVFE 60
M +VHFLEGV FEKLHIE L+ENSS+KEIRICMPKGA+MDKHKAPGAISVQVLEGKIVFE
Sbjct: 1 MRMVHFLEGVHFEKLHIEALSENSSNKEIRICMPKGAIMDKHKAPGAISVQVLEGKIVFE 60
Query: 61 VGDEKIEMPKGALISLEAQVLHRLDALENSVIRLSLSKK 99
VGDEKIEMPKGALISLEAQV HRLDALENSVIRLSLSKK
Sbjct: 61 VGDEKIEMPKGALISLEAQVSHRLDALENSVIRLSLSKK 99
>ref|NP_281922.1| (NC_002163) hypothetical protein Cj0761 [Campylobacter jejuni]
pir||A81347 hypothetical protein Cj0761 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73026.1| (AL139076) hypothetical protein Cj0761 [Campylobacter jejuni]
Length = 113
Score = 86.3 bits (212), Expect = 6e-17
Identities = 48/86 (55%), Positives = 60/86 (68%)
Query: 13 EKLHIEVLNENSSHKEIRICMPKGAVMDKHKAPGAISVQVLEGKIVFEVGDEKIEMPKGA 72
+++ I VL +N KEI+I + K +VM +HKAP AI VQVL GKI FEV EK E+
Sbjct: 14 KEVKINVLIDNEKGKEIQILLAKDSVMKEHKAPFAIHVQVLSGKIWFEVEKEKFELNALD 73
Query: 73 LISLEAQVLHRLDALENSVIRLSLSK 98
+ISLEA V H L LENS+IRLSL+K
Sbjct: 74 MISLEANVAHSLGGLENSIIRLSLNK 99
>ref|NP_213642.1| (NC_000918) putative protein [Aquifex aeolicus]
pir||D70381 hypothetical protein aq_943 - Aquifex aeolicus
gb|AAC07054.1| (AE000715) putative protein [Aquifex aeolicus]
Length = 107
Score = 57.4 bits (137), Expect = 3e-08
Identities = 33/99 (33%), Positives = 54/99 (54%)
Query: 1 MEVVHFLEGVCFEKLHIEVLNENSSHKEIRICMPKGAVMDKHKAPGAISVQVLEGKIVFE 60
M + LE EK E++ E+ + K IR + KG + H +P ++ + VL+GK+ F
Sbjct: 1 MAKIKHLEEKFGEKPVSELVYEDENAKVIRFYLKKGQEIKPHTSPSSVYITVLKGKVTFT 60
Query: 61 VGDEKIEMPKGALISLEAQVLHRLDALENSVIRLSLSKK 99
G+EKI+ +G+ I E LH A E+SV+ ++ K
Sbjct: 61 AGEEKIKGEQGSTIYYEPNELHGFVAEEDSVLEAVITPK 99
>ref|NP_632387.1| (NC_003901) hypothetical protein [Methanosarcina mazei Goe1]
gb|AAM30059.1| (AE013262) hypothetical protein [Methanosarcina mazei Goe1]
Length = 112
Score = 45.1 bits (105), Expect = 2e-04
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 17 IEVLNENSSHKEIRICMPKGAVMDKHKAPGAISVQVLEGKIVFEVGDEKIEMPKGALISL 76
+ +L + + + + I + G + KH P + +LEGK V E+GDE+ E+ + LI
Sbjct: 20 VRMLYDRENAQAVHIELKPGEALKKHITPVDVFFYILEGKGVVEIGDEQEEVSRDMLIES 79
Query: 77 EAQVLHRLDALENSVIRLSLSK 98
A++ HRL + + R+ + K
Sbjct: 80 PAKIPHRLLNPGDGIFRVLVVK 101
>gb|AAG09973.1|AF248038_2 (AF248038) acetate kinase [Streptococcus agalactiae]
Length = 101
Score = 44.3 bits (103), Expect = 3e-04
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 33 MPKGAVMDKHKAPGAISVQVLEGKIVFEVGDEKIEMPKGALISLEAQVLHRLDALENS 90
M K + + P + VLEGK+ +GD+K + K +LISL Q +H L A+ENS
Sbjct: 36 MAKEETISNERCPHPKLINVLEGKLEIILGDQKHILEKDSLISLSPQEIHHLRAIENS 93
>ref|NP_604202.1| (NC_003454) Hypothetical cytosolic protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gb|AAL95501.1| (AE010636) Hypothetical cytosolic protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 111
Score = 43.5 bits (101), Expect = 5e-04
Identities = 24/64 (37%), Positives = 36/64 (55%)
Query: 35 KGAVMDKHKAPGAISVQVLEGKIVFEVGDEKIEMPKGALISLEAQVLHRLDALENSVIRL 94
KG +D HKAPG V VL+G+ + V + + KG L A + H ++A+EN + L
Sbjct: 48 KGETLDPHKAPGDALVTVLDGEGKYIVDGKTFIVKKGESTVLPANIPHAVEAVENFKMML 107
Query: 95 SLSK 98
+L K
Sbjct: 108 ALVK 111
>ref|NP_618056.1| (NC_003552) predicted protein [Methanosarcina acetivorans str.
C2A] [Methanosarcina acetivorans C2A]
gb|AAM06536.1| (AE011020) predicted protein [Methanosarcina acetivorans str.
C2A] [Methanosarcina acetivorans C2A]
Length = 112
Score = 42.7 bits (99), Expect = 8e-04
Identities = 23/68 (33%), Positives = 37/68 (53%)
Query: 17 IEVLNENSSHKEIRICMPKGAVMDKHKAPGAISVQVLEGKIVFEVGDEKIEMPKGALISL 76
+ +L + + + I + G V+ KH P + VLEG + E+GDE+ E+ + LI
Sbjct: 20 VRMLYDTEHAQAVHIELKPGEVLKKHITPVDVFFYVLEGIGIVEIGDEQEEVSRDMLIES 79
Query: 77 EAQVLHRL 84
A+V HRL
Sbjct: 80 PAKVPHRL 87
>ref|NP_628848.1| (NC_003888) hypothetical protein SCD31.14 [Streptomyces coelicolor
A3(2)]
emb|CAB82057.1| (AL161803) hypothetical protein SCD31.14 [Streptomyces coelicolor
A3(2)]
Length = 110
Score = 41.6 bits (96), Expect = 0.002
Identities = 23/72 (31%), Positives = 40/72 (54%), Gaps = 1/72 (1%)
Query: 27 KEIRICMPKGAVMDKHKAPGAISVQVLEGKIVFEVGDEKIEMPKGALISLEAQVLHRLDA 86
++ + + G + +H+ PG +VQVL G++ GD + G LI L H L+A
Sbjct: 38 RQTLLALTAGTTLAEHENPGEATVQVLRGRVRLTSGDTSWDGRAGDLI-LIPPARHSLEA 96
Query: 87 LENSVIRLSLSK 98
LE+S + L+++K
Sbjct: 97 LEDSAVLLTVAK 108
>ref|NP_601256.1| (NC_003450) COG1917:Uncharacterized ACR, double-stranded
beta-helix domain [Corynebacterium glutamicum]
dbj|BAB99446.1| (AP005280) Uncharacterized ACR, double-stranded beta-helix domain
[Corynebacterium glutamicum ATCC 13032]
Length = 116
Score = 40.4 bits (93), Expect = 0.004
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 36 GAVMDKHKAPGAISVQVLEGKIVFEVGDEKIEMPKGALISLEAQVLHRLD 85
G + H+A I+V G++ F G+E E+ G + LEA V HR+D
Sbjct: 41 GQSLPDHRAAHPITVTAFSGQLTFSYGEETFELSPGVTVHLEAGVTHRVD 90
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.137 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,610,454
Number of Sequences: 1026957
Number of extensions: 1810401
Number of successful extensions: 4397
Number of sequences better than 1.0e-02: 10
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4387
Number of HSP's gapped (non-prelim): 10
length of query: 99
length of database: 324,149,939
effective HSP length: 75
effective length of query: 24
effective length of database: 247,128,164
effective search space: 5931075936
effective search space used: 5931075936
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 90 (39.3 bits)