BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645525|ref|NP_207701.1| hypothetical protein
[Helicobacter pylori 26695]
         (201 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207701.1|  (NC_000915) hypothetical protein [Helicoba...   417  e-116
gb|AAF87839.1|AF283672_1  (AF283672) restriction endonucleas...   372  e-102
ref|NP_223563.1|  (NC_000921) putative [Helicobacter pylori ...   351  3e-96

>ref|NP_207701.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||E64633 hypothetical protein HP0909 - Helicobacter pylori (strain 26695)
 gb|AAD07959.1| (AE000600) H. pylori predicted coding region HP0909 [Helicobacter
           pylori 26695]
          Length = 201

 Score =  417 bits (1071), Expect = e-116
 Identities = 201/201 (100%), Positives = 201/201 (100%)

Query: 1   MIPTQLNEIAEFLKTNPYNLSQPLQDGRLNSSVNEEEILNIIKDYFPIQLPKAREWWDFS 60
           MIPTQLNEIAEFLKTNPYNLSQPLQDGRLNSSVNEEEILNIIKDYFPIQLPKAREWWDFS
Sbjct: 1   MIPTQLNEIAEFLKTNPYNLSQPLQDGRLNSSVNEEEILNIIKDYFPIQLPKAREWWDFS 60

Query: 61  FKKNDIFYPVNITTTKTADNLNGKLGIYYALCGLLPTFNNEIAWEKYFQKLHKDLGKNTN 120
           FKKNDIFYPVNITTTKTADNLNGKLGIYYALCGLLPTFNNEIAWEKYFQKLHKDLGKNTN
Sbjct: 61  FKKNDIFYPVNITTTKTADNLNGKLGIYYALCGLLPTFNNEIAWEKYFQKLHKDLGKNTN 120

Query: 121 RDYYFLIISKNDPKDVFINSLKGIQTLQPNNLPFQCKWDNNREIIQRDFDGSKNSILSAL 180
           RDYYFLIISKNDPKDVFINSLKGIQTLQPNNLPFQCKWDNNREIIQRDFDGSKNSILSAL
Sbjct: 121 RDYYFLIISKNDPKDVFINSLKGIQTLQPNNLPFQCKWDNNREIIQRDFDGSKNSILSAL 180

Query: 181 AKSVELRVYLAFKEVFGEFFE 201
           AKSVELRVYLAFKEVFGEFFE
Sbjct: 181 AKSVELRVYLAFKEVFGEFFE 201



>gb|AAF87839.1|AF283672_1 (AF283672) restriction endonuclease Hpy8I [Helicobacter pylori]
          Length = 207

 Score =  372 bits (956), Expect = e-102
 Identities = 185/207 (89%), Positives = 192/207 (92%), Gaps = 6/207 (2%)

Query: 1   MIPTQLNEIAEFLKTNPYNLSQPLQDGRLNSSVNEEEILNIIKDYFPIQLPKAREWWDFS 60
           MIPTQLNEIAEFLKTNPY+LSQPLQDGRLNSSVNEEEILN IKDYFPIQLPKAREWWDFS
Sbjct: 1   MIPTQLNEIAEFLKTNPYHLSQPLQDGRLNSSVNEEEILNTIKDYFPIQLPKAREWWDFS 60

Query: 61  FKKNDIFYPVNI--TTTKTADNLNGKLGIYYALCGLLPTFNNEIAWEKYFQKLHKDLGKN 118
           FKKNDIFYPVNI  TTTKTADNLN KLGIYYALCGL+P FNNEIAWEKYFQKLHKDLGKN
Sbjct: 61  FKKNDIFYPVNIKTTTTKTADNLNCKLGIYYALCGLVPEFNNEIAWEKYFQKLHKDLGKN 120

Query: 119 TNRDYYFLIISKNDPKDVFINSLKGIQTLQP--NNLPFQCKWDNNREIIQRDFDGSKNSI 176
           T+RDYYFLII+KNDPKDVFINSLKGIQTLQP  NNLPFQCKWDNNREI+QR+FD SKN I
Sbjct: 121 TDRDYYFLIINKNDPKDVFINSLKGIQTLQPNGNNLPFQCKWDNNREIVQRNFDESKNFI 180

Query: 177 LSALAKSVELR--VYLAFKEVFGEFFE 201
           LS LAKSV LR  +YL FKE FGEFFE
Sbjct: 181 LSTLAKSVTLRANIYLTFKEFFGEFFE 207



>ref|NP_223563.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||H71881 hypothetical protein jhp0845 - Helicobacter pylori (strain J99)
 gb|AAD06423.1| (AE001513) putative [Helicobacter pylori J99]
          Length = 193

 Score =  351 bits (900), Expect = 3e-96
 Identities = 168/189 (88%), Positives = 178/189 (93%), Gaps = 2/189 (1%)

Query: 1   MIPTQLNEIAEFLKTNPYNLSQPLQDGRLNSSVNEEEILNIIKDYFPIQLPKAREWWDFS 60
           M+PTQLNEIAEFLKTNPYNLSQPLQDGRLNSSVNEEEILN IKDYFPIQLP+ REWWDFS
Sbjct: 1   MVPTQLNEIAEFLKTNPYNLSQPLQDGRLNSSVNEEEILNTIKDYFPIQLPRVREWWDFS 60

Query: 61  FKKNDIFYPVNI--TTTKTADNLNGKLGIYYALCGLLPTFNNEIAWEKYFQKLHKDLGKN 118
           F++N IFYPVNI  TTTKTADNLNGKLGIYYALCGL+P FNNEIAWEKYFQKLHKDLG N
Sbjct: 61  FEENKIFYPVNIKTTTTKTADNLNGKLGIYYALCGLVPEFNNEIAWEKYFQKLHKDLGTN 120

Query: 119 TNRDYYFLIISKNDPKDVFINSLKGIQTLQPNNLPFQCKWDNNREIIQRDFDGSKNSILS 178
           TNRDYYFLII+KNDPKD+FINSLKGIQTLQPNNLPFQCKWDNNR+I+QR F  SKN ILS
Sbjct: 121 TNRDYYFLIINKNDPKDIFINSLKGIQTLQPNNLPFQCKWDNNRKIVQRSFIESKNFILS 180

Query: 179 ALAKSVELR 187
           ALAKSV+LR
Sbjct: 181 ALAKSVKLR 189



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.319    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,606,094
Number of Sequences: 1026957
Number of extensions: 5988328
Number of successful extensions: 13202
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13195
Number of HSP's gapped (non-prelim): 3
length of query: 201
length of database: 324,149,939
effective HSP length: 115
effective length of query: 86
effective length of database: 206,049,884
effective search space: 17720290024
effective search space used: 17720290024
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 94 (40.8 bits)