BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645534|ref|NP_207710.1| hypothetical protein
[Helicobacter pylori 26695]
         (143 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207710.1|  (NC_000915) hypothetical protein [Helicoba...   275  5e-74
ref|NP_223570.1|  (NC_000921) putative [Helicobacter pylori ...   261  9e-70
ref|NP_281473.1|  (NC_002163) hypothetical protein Cj0280 [C...   141  1e-33

>ref|NP_207710.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||F64634 hypothetical protein HP0918 - Helicobacter pylori (strain 26695)
 gb|AAD07967.1| (AE000601) H. pylori predicted coding region HP0918 [Helicobacter
           pylori 26695]
          Length = 143

 Score =  275 bits (704), Expect = 5e-74
 Identities = 143/143 (100%), Positives = 143/143 (100%)

Query: 1   MALVYLVQSDTTIGLLSKDSEKLNALKGRPKNQSVLIESADFSTLKSLVRAPNAFKNLIR 60
           MALVYLVQSDTTIGLLSKDSEKLNALKGRPKNQSVLIESADFSTLKSLVRAPNAFKNLIR
Sbjct: 1   MALVYLVQSDTTIGLLSKDSEKLNALKGRPKNQSVLIESADFSTLKSLVRAPNAFKNLIR 60

Query: 61  RSAKTTFIYPNSKAVRVIRGRHGDFLNRFKTLYSTSANLTQCAYDKEIASNLADVIVSDE 120
           RSAKTTFIYPNSKAVRVIRGRHGDFLNRFKTLYSTSANLTQCAYDKEIASNLADVIVSDE
Sbjct: 61  RSAKTTFIYPNSKAVRVIRGRHGDFLNRFKTLYSTSANLTQCAYDKEIASNLADVIVSDE 120

Query: 121 RGLFESSSSKIFRLYKDKKVRIR 143
           RGLFESSSSKIFRLYKDKKVRIR
Sbjct: 121 RGLFESSSSKIFRLYKDKKVRIR 143



>ref|NP_223570.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||G71880 hypothetical protein jhp0852 - Helicobacter pylori (strain J99)
 gb|AAD06430.1| (AE001514) putative [Helicobacter pylori J99]
          Length = 143

 Score =  261 bits (667), Expect = 9e-70
 Identities = 132/143 (92%), Positives = 138/143 (96%)

Query: 1   MALVYLVQSDTTIGLLSKDSEKLNALKGRPKNQSVLIESADFSTLKSLVRAPNAFKNLIR 60
           MALVYL QSDTTIGLLSKDSEKLNALKGRPKNQSVLIES DF+TLKSLVRAPNAFKNL+R
Sbjct: 1   MALVYLAQSDTTIGLLSKDSEKLNALKGRPKNQSVLIESTDFTTLKSLVRAPNAFKNLVR 60

Query: 61  RSAKTTFIYPNSKAVRVIRGRHGDFLNRFKTLYSTSANLTQCAYDKEIASNLADVIVSDE 120
           RSAKTTFIYPNSKAVRV++GRHGDFL RFKTLYSTSANLTQCAYDKEIASNLADVIVSDE
Sbjct: 61  RSAKTTFIYPNSKAVRVVKGRHGDFLKRFKTLYSTSANLTQCAYDKEIASNLADVIVSDE 120

Query: 121 RGLFESSSSKIFRLYKDKKVRIR 143
           RGLFES SSKIF+LYK KKVR+R
Sbjct: 121 RGLFESGSSKIFKLYKHKKVRVR 143



>ref|NP_281473.1| (NC_002163) hypothetical protein Cj0280 [Campylobacter jejuni]
 pir||F81446 hypothetical protein Cj0280 [imported] - Campylobacter jejuni
           (strain NCTC 11168)
 emb|CAB72747.1| (AL139074) hypothetical protein Cj0280 [Campylobacter jejuni]
          Length = 140

 Score =  141 bits (355), Expect = 1e-33
 Identities = 72/142 (50%), Positives = 105/142 (73%), Gaps = 3/142 (2%)

Query: 3   LVYLVQSDTTIGLLSKDSEKLNALKGRPKNQSVLIESADFSTLKSLVRAPNAFKNLIRRS 62
           ++YL Q+DTT+G LSK+ E++NALKGR KNQ  LI SA F  LKSL R P +FKNL+RRS
Sbjct: 1   MIYLAQTDTTVGFLSKNLEEINALKGRDKNQPCLITSAKFCELKSLARIPKSFKNLVRRS 60

Query: 63  AKTTFIYPNSKAVRVIRG-RHGDFLNRFKTLYSTSANLTQCAYDKEIASNLADVIVSDER 121
            KTTFIYPN++A+R+++  +H +FL++    YS+SAN     +D+E A ++AD+I+ ++ 
Sbjct: 61  KKTTFIYPNNQAIRIVKECKHANFLSKNGYFYSSSANKHGKEFDEEWARSVADIILDEK- 119

Query: 122 GLFESSSSKIFRLYKDKKVRIR 143
             FE+  SKI +L K+K ++IR
Sbjct: 120 -FFENIPSKILKLSKNKMIKIR 140



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.318    0.132    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,781,279
Number of Sequences: 1026957
Number of extensions: 2280316
Number of successful extensions: 6241
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6236
Number of HSP's gapped (non-prelim): 3
length of query: 143
length of database: 324,149,939
effective HSP length: 119
effective length of query: 24
effective length of database: 201,942,056
effective search space: 4846609344
effective search space used: 4846609344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 89 (38.9 bits)