BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645542|ref|NP_207718.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(381 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207718.1| (NC_000915) conserved hypothetical protein... 763 0.0
ref|NP_223578.1| (NC_000921) putative [Helicobacter pylori ... 724 0.0
ref|NP_282597.1| (NC_002163) ypothetical protein Cj1457c [C... 305 4e-82
ref|NP_295714.1| (NC_001263) conserved hypothetical protein... 159 7e-38
ref|NP_406822.1| (NC_003143) conserved hypothetical protein... 123 4e-27
ref|NP_246549.1| (NC_002663) unknown [Pasteurella multocida... 121 2e-26
ref|NP_438860.1| (NC_000907) conserved hypothetical protein... 119 6e-26
ref|NP_289294.1| (NC_002655) putative hydrogenase subunit [... 115 6e-25
ref|NP_230181.1| (NC_002505) conserved hypothetical protein... 115 6e-25
ref|NP_457317.1| (NC_003198) conserved hypothetical protein... 114 2e-24
ref|NP_417225.1| (NC_000913) putative hydrogenase subunit [... 114 2e-24
ref|NP_461849.1| (NC_003197) paral putative hydrogenase sub... 112 7e-24
ref|NP_637074.1| (NC_003902) hydrogenase subunit [Xanthomon... 107 3e-22
ref|NP_642054.1| (NC_003919) hydrogenase subunit [Xanthomon... 100 2e-20
ref|NP_252316.1| (NC_002516) conserved hypothetical protein... 100 3e-20
ref|NP_248367.1| (NC_000909) conserved hypothetical protein... 94 2e-18
ref|NP_070505.1| (NC_000917) conserved hypothetical protein... 90 4e-17
ref|NP_214182.1| (NC_000918) hypothetical protein [Aquifex ... 86 7e-16
ref|NP_276642.1| (NC_000916) conserved protein [Methanother... 86 9e-16
ref|NP_618162.1| (NC_003552) conserved hypothetical protein... 78 1e-13
ref|NP_112582.1| (NM_031292) hypothetical protein DKFZp434G... 73 5e-12
ref|NP_648231.1| (NM_139974) CG6745 gene product [Drosophil... 73 5e-12
ref|XP_128203.1| (XM_128203) RIKEN cDNA 3000003F02 [Mus mus... 72 1e-11
ref|NP_579284.1| (NC_003413) hypothetical protein [Pyrococc... 71 2e-11
ref|NP_632138.1| (NC_003901) conserved protein [Methanosarc... 71 2e-11
dbj|BAB67790.1| (AB067484) KIAA1897 protein [Homo sapiens] 70 4e-11
ref|NP_143398.1| (NC_000961) hypothetical protein [Pyrococc... 70 5e-11
dbj|BAB89856.1| (AP003295) hypothetical protein~similar to ... 67 3e-10
ref|NP_126313.1| (NC_000868) hypothetical protein [Pyrococc... 67 3e-10
ref|NP_014886.1| (NC_001147) Hypothetical ORF; Yor243cp [Sa... 67 3e-10
emb|CAA22009.1| (AL033502) hypothetical protein [Candida al... 64 2e-09
ref|NP_247567.1| (NC_000909) conserved hypothetical protein... 63 5e-09
ref|NP_595812.1| (NC_003423) hypothetical protein [Schizosa... 63 6e-09
ref|NP_613961.1| (NC_003551) Uncharacterized conserved prot... 60 5e-08
ref|NP_393692.1| (NC_002578) conserved hypothetical protein... 58 2e-07
ref|NP_505653.1| (NM_073252) Uncharacterized protein family... 57 5e-07
ref|NP_187133.1| (NM_111354) unknown protein [Arabidopsis t... 55 1e-06
gb|EAA11729.1| (AAAB01008960) ebiP4385 [Anopheles gambiae s... 55 2e-06
ref|NP_111899.1| (NC_002689) Uncharacterized conserved prot... 54 4e-06
gb|AAG18841.1| (AE004988) Vng0243c [Halobacterium sp. NRC-1] 50 4e-05
ref|NP_444184.1| (NC_002607) Uncharacterized conserved prot... 50 4e-05
ref|NP_560515.1| (NC_003364) conserved hypothetical protein... 48 2e-04
ref|XP_110124.1| (XM_110124) RIKEN cDNA 3000003F02 [Mus mus... 44 0.003
ref|NP_376057.1| (NC_003106) 363aa long conserved hypotheti... 43 0.007
ref|NP_341730.1| (NC_002754) Conserved hypothetical protein... 43 0.007
>ref|NP_207718.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
sp|P55985|Y926_HELPY Hypothetical protein HP0926
pir||F64635 conserved hypothetical protein HP0926 - Helicobacter pylori
(strain 26695)
gb|AAD07971.1| (AE000602) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 381
Score = 763 bits (1971), Expect = 0.0
Identities = 381/381 (100%), Positives = 381/381 (100%)
Query: 1 MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEML 60
MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEML
Sbjct: 1 MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEML 60
Query: 61 QIFSQILGVRIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYH 120
QIFSQILGVRIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYH
Sbjct: 61 QIFSQILGVRIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYH 120
Query: 121 HNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIAQFGMPNYFGSQRFGKFNDNHQEG 180
HNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIAQFGMPNYFGSQRFGKFNDNHQEG
Sbjct: 121 HNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIAQFGMPNYFGSQRFGKFNDNHQEG 180
Query: 181 LKILQNQTKFAHQKLNAFLISSYQSYLFNALLSKRLEISKIISAFSVKENLEFFKQKNLS 240
LKILQNQTKFAHQKLNAFLISSYQSYLFNALLSKRLEISKIISAFSVKENLEFFKQKNLS
Sbjct: 181 LKILQNQTKFAHQKLNAFLISSYQSYLFNALLSKRLEISKIISAFSVKENLEFFKQKNLS 240
Query: 241 VDSDTLKTLKNQAHPFKILEGDVMCHYPYGKFFDALELEKEGERFLKKEVAPTGLLDGKK 300
VDSDTLKTLKNQAHPFKILEGDVMCHYPYGKFFDALELEKEGERFLKKEVAPTGLLDGKK
Sbjct: 241 VDSDTLKTLKNQAHPFKILEGDVMCHYPYGKFFDALELEKEGERFLKKEVAPTGLLDGKK 300
Query: 301 ALYAKNLSLEIEKEFQHNLLSSHAKTLGSRRFFWVFVENVTSQYVKEKAQFELGFYLPKG 360
ALYAKNLSLEIEKEFQHNLLSSHAKTLGSRRFFWVFVENVTSQYVKEKAQFELGFYLPKG
Sbjct: 301 ALYAKNLSLEIEKEFQHNLLSSHAKTLGSRRFFWVFVENVTSQYVKEKAQFELGFYLPKG 360
Query: 361 SYASALLKEIKHEKGENNDEF 381
SYASALLKEIKHEKGENNDEF
Sbjct: 361 SYASALLKEIKHEKGENNDEF 381
>ref|NP_223578.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZKS5|Y926_HELPJ Hypothetical protein JHP0860
pir||C71878 hypothetical protein jhp0860 - Helicobacter pylori (strain J99)
gb|AAD06443.1| (AE001516) putative [Helicobacter pylori J99]
Length = 381
Score = 724 bits (1868), Expect = 0.0
Identities = 359/381 (94%), Positives = 369/381 (96%)
Query: 1 MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEML 60
MNLNFMPLLHAYNH SIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEML
Sbjct: 1 MNLNFMPLLHAYNHVSIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEML 60
Query: 61 QIFSQILGVRIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYH 120
QIFSQILGV+IAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQE+NLKILSLNYH
Sbjct: 61 QIFSQILGVKIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQERNLKILSLNYH 120
Query: 121 HNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIAQFGMPNYFGSQRFGKFNDNHQEG 180
HNKIKLGHLKGNRFFMRFKKMTPLNAQKT+QVLEQIAQFGMPNYFGSQRFGKFNDNH+EG
Sbjct: 121 HNKIKLGHLKGNRFFMRFKKMTPLNAQKTEQVLEQIAQFGMPNYFGSQRFGKFNDNHKEG 180
Query: 181 LKILQNQTKFAHQKLNAFLISSYQSYLFNALLSKRLEISKIISAFSVKENLEFFKQKNLS 240
LKILQN+TKFAHQKLNAFLISSYQSYLFN+LLSKRLEISKIISAFSVKE+LEFFKQKNLS
Sbjct: 181 LKILQNETKFAHQKLNAFLISSYQSYLFNSLLSKRLEISKIISAFSVKESLEFFKQKNLS 240
Query: 241 VDSDTLKTLKNQAHPFKILEGDVMCHYPYGKFFDALELEKEGERFLKKEVAPTGLLDGKK 300
V S+ LK LKNQAHPFKILEGDVM HYPYGKFFDALELEKE ERFL KE PTGLLDGKK
Sbjct: 241 VHSNALKALKNQAHPFKILEGDVMRHYPYGKFFDALELEKESERFLNKEAVPTGLLDGKK 300
Query: 301 ALYAKNLSLEIEKEFQHNLLSSHAKTLGSRRFFWVFVENVTSQYVKEKAQFELGFYLPKG 360
ALYAKNLSLEIEK FQHNLLS HAKTLGSRRFFWVFVEN+TSQY+KEKAQFEL FYLPKG
Sbjct: 301 ALYAKNLSLEIEKGFQHNLLSGHAKTLGSRRFFWVFVENITSQYIKEKAQFELEFYLPKG 360
Query: 361 SYASALLKEIKHEKGENNDEF 381
SYASALLKEIKHEKGENNDEF
Sbjct: 361 SYASALLKEIKHEKGENNDEF 381
>ref|NP_282597.1| (NC_002163) ypothetical protein Cj1457c [Campylobacter jejuni]
pir||H81291 hypothetical protein Cj1457c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73880.1| (AL139078) ypothetical protein Cj1457c [Campylobacter jejuni]
Length = 372
Score = 305 bits (782), Expect = 4e-82
Identities = 166/373 (44%), Positives = 238/373 (63%), Gaps = 12/373 (3%)
Query: 2 NLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQ 61
N F PL ++ H+ I+ +F+ ++ DF V E PLYEFS GEH ++ + K L+T E L+
Sbjct: 7 NTIFKPL-YSLKHSPINAYFSKNSDDFVVRERPLYEFSGKGEHLILHINKKDLTTNEALK 65
Query: 62 IFSQILGVRIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYHH 121
I S+ GV+I + GYAGLKDK T Q++S+PKK+ L SNF LKIL + H
Sbjct: 66 ILSEASGVKIRDFGYAGLKDKQGSTFQYLSMPKKFESFL----SNFSHPKLKILEIFTHE 121
Query: 122 NKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIAQFGMPNYFGSQRFGKFNDNHQEGL 181
NK+++GHLKGN FF+R KK+ P +A K +Q L + + G NYFG QRFGKF DN++EGL
Sbjct: 122 NKLRIGHLKGNSFFIRLKKVLPSDALKLEQALMNLDKQGFANYFGYQRFGKFGDNYKEGL 181
Query: 182 KILQNQTKFAHQKLNAFLISSYQSYLFNALLSKRLEISKIISAFSVKENLEFFKQKNLSV 241
+IL+ + K + K+ FLIS++QS LFN LSKR+E+S + FS KE ++ +K +
Sbjct: 182 EILRGK-KMKNVKMKEFLISAFQSELFNRYLSKRVELSHFANDFSEKELIQIYK-----I 235
Query: 242 DSDTLKTLKNQAHPFKILEGDVMCHYPYGKFFDALELEKEGERFLKKEVAPTGLLDGKKA 301
+ K LK Q FK+L+G+V+ HYP+GK F +L E RF ++++ GLL G KA
Sbjct: 236 SKEEAKELKKQEQFFKLLKGEVLGHYPFGKCFLCEDLSAELGRFKARDISAMGLLIGAKA 295
Query: 302 L-YAKNLSLEIEKEFQHNLLSSHAKTLGSRRFFWVFVENVTSQYVKEKAQFELGFYLPKG 360
+ L+L +E E + L AK GSRRF W ++E + +Y +EKA F + F+L KG
Sbjct: 296 YETGEGLALNLENEIFKDTLEFKAKMQGSRRFMWGYLEELKWRYDEEKAHFCIEFFLQKG 355
Query: 361 SYASALLKEIKHE 373
SYA+ +L+EI H+
Sbjct: 356 SYATVVLEEILHK 368
>ref|NP_295714.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||D75328 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF11542.1|AE002037_3 (AE002037) conserved hypothetical protein [Deinococcus radiodurans]
Length = 353
Score = 159 bits (401), Expect = 7e-38
Identities = 117/347 (33%), Positives = 176/347 (50%), Gaps = 44/347 (12%)
Query: 27 DFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALT 86
DF V EVP Y +GE+ + V K+ +T +++ LGVR ++G AGLKD++A+T
Sbjct: 24 DFQVQEVPAYLPGGSGEYLYLHVEKTRHTTAHVVRELCAQLGVRDRDVGVAGLKDRHAVT 83
Query: 87 TQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNA 146
TQ++SLP K P + +F ++IL + H NK+ +GHL GNRF +R + + A
Sbjct: 84 TQWLSLPAKVEPRM----GDFSLPGVRILETSRHTNKLGMGHLHGNRFVVRVRGAAGM-A 138
Query: 147 QKTKQVLEQIAQFGMPNYFGSQRFGKFNDNHQEGLKILQNQTKFAHQKLNAFLISSYQSY 206
++ + L +AQ G+PNYFG QRFG N +EGL++L+ +++ ++ FL SS QS
Sbjct: 139 EQAGETLATLAQGGVPNYFGPQRFGLGGLNAEEGLRVLRGESELRDPRVRRFLTSSVQSA 198
Query: 207 LFNALLSKRLEISKIISAFSVKENLEFFKQKNLSVDSDTLKTLKNQAHPFKILEGDVMCH 266
+FNAL+S RLE E F ++L GD+
Sbjct: 199 IFNALVSLRLE-------------REVFD---------------------RLLTGDMAKK 224
Query: 267 YPYGKFFDALELEKEGERFLKKEVAPTGLLDGKKA--LYAKNLSLEIEKEFQHNLLSS-H 323
+ G F + E R + EV+ TG L G+K L A +LE E L
Sbjct: 225 HDTGGVFLVEDAGAETPRAQRGEVSATGTLFGRKVKPLTADAGALEAEALALFGLSPQVF 284
Query: 324 AKTLGSRRFFWVFVENVTSQYVKEKAQFELGFYLPKGSYASALLKEI 370
A G RR VF ++ E + L F LPKGS+A+++L+E+
Sbjct: 285 ASRKGDRRLIRVF--PAEAEVRPEDDGYVLAFTLPKGSFATSVLREV 329
>ref|NP_406822.1| (NC_003143) conserved hypothetical protein [Yersinia pestis]
emb|CAC92589.1| (AJ414156) conserved hypothetical protein [Yersinia pestis]
Length = 349
Score = 123 bits (308), Expect = 4e-27
Identities = 104/360 (28%), Positives = 173/360 (47%), Gaps = 50/360 (13%)
Query: 23 SSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDK 82
++ DF V E +E GEH ++++RK+G +T + ++ + + YAGLKD+
Sbjct: 21 ANPEDFVVVEDLGFEPDGEGEHLLVRIRKNGCNTQFVADYLARFAKLHPRLVSYAGLKDR 80
Query: 83 NALTTQF--ISLPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKK 140
+A+T Q+ + LP K AP L + F+ + ++L H K+++G LKGN F + +
Sbjct: 81 HAVTEQWFCLHLPGKEAPDL----ATFELEGCEVLEAVRHKRKLRIGSLKGNAFTLVLRH 136
Query: 141 MTPLNAQKTKQVLEQIAQFGMPNYFGSQRFGKFNDNHQEGLKILQNQTKFAHQKLNAFLI 200
+T + Q +Q L+QIA G+PNYFGSQRFG+ +N + N+ + + +F +
Sbjct: 137 IT--DRQDVEQRLQQIAAQGVPNYFGSQRFGRGGNNLVQARLWANNEIRVKERSKRSFYL 194
Query: 201 SSYQSYLFNALLSKRLEISKIISAFSVKENLEFFKQKNLSVDSDTLKTLKNQAHPFKILE 260
S+ +S +FN + S RL + L T +LE
Sbjct: 195 SASRSAMFNLISSYRL--------------------------AQQLSTT--------VLE 220
Query: 261 GDVMCHYPYGKFF--DALELEKEGERFLKKEVAPTGLLDGKKALYAKNLSLEIEKEF--- 315
GD + G +F A EL +R E+ T L G L +L E+
Sbjct: 221 GDALQLSGRGSWFVAQADELAALQQRVTAGELNITAPLPGDSELGTHGEALAFEQACLAE 280
Query: 316 QHNLLS--SHAKTLGSRRFFWVFVENVTSQYVKEKAQFELGFYLPKGSYASALLKEIKHE 373
Q LLS + GSRR + +N+ S + + EL F+LP GS+A+++++EI ++
Sbjct: 281 QTELLSLIKRERVEGSRRAVLLKPQNMISNWWDD-VTLELSFWLPAGSFATSVVREIMNQ 339
>ref|NP_246549.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK03694.1| (AE006198) unknown [Pasteurella multocida]
Length = 335
Score = 121 bits (303), Expect = 2e-26
Identities = 101/372 (27%), Positives = 174/372 (46%), Gaps = 50/372 (13%)
Query: 6 MPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQ 65
M L + + + DF V E YE S GE ++VRK+ +TL + + +Q
Sbjct: 1 MELAYLHTRPEQYARLKAECADFIVKENLGYEMSGDGEFVAVKVRKTDCNTLFVGEKLAQ 60
Query: 66 ILGVRIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIK 125
+G+ +GYAGLKD+ A+T Q+ L P + +FQ + + IL + HH KI+
Sbjct: 61 FVGISERNMGYAGLKDRKAVTEQWFCLHMPGQP--TPDFRSFQLEGVDILEVTRHHRKIR 118
Query: 126 LGHLKGNRFFMRFKKMTPLNAQKTKQV---LEQIAQFGMPNYFGSQRFGKFNDNHQEGLK 182
G L+GN F + + A++T ++ L I Q G PNYF QRFG+ N + L+
Sbjct: 119 TGSLEGNHFEILLR-----GAKETDELNVRLNNIKQCGFPNYFTEQRFGRDGHNLTQALR 173
Query: 183 ILQNQTKFAHQKLNAFLISSYQSYLFNALLSKRLEISKIISAFSVKENLEFFKQKNLSVD 242
Q + +K +F +S+ +S +FN ++S+R+ L+ +Q
Sbjct: 174 WAQGEINVKDRKKRSFYLSAARSEVFNLVVSERIA-------------LQLAQQ------ 214
Query: 243 SDTLKTLKNQAHPFKILEGDVMCHYPYGKFFDALELEKEG---ERFLKKEVAPTGLLDGK 299
+L GD++ +F A E E R ++++ T L G+
Sbjct: 215 ---------------VLRGDMLQLQGSHSWFQADEKEDLNALQARLEQQDILLTAPLIGE 259
Query: 300 KALYAKNLSLEIEKEFQHNL-LSSHAKTLGSRRFFWVFVENVTSQYVKEKAQFELGFYLP 358
+ A ++ ++ ++ Q L L + + +RR + + + +V E +L FYLP
Sbjct: 260 QNPPATDIENQLVEQHQALLTLMAKERMKAARRPMLMQAQALQWAFVAE--GLKLAFYLP 317
Query: 359 KGSYASALLKEI 370
GSYA+AL++E+
Sbjct: 318 AGSYATALVREV 329
>ref|NP_438860.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P44039|YGBO_HAEIN Protein HI0701
pir||C64012 conserved hypothetical protein HI0701 - Haemophilus influenzae
(strain Rd KW20)
gb|AAC22360.1| (U32753) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 339
Score = 119 bits (298), Expect = 6e-26
Identities = 100/355 (28%), Positives = 162/355 (45%), Gaps = 58/355 (16%)
Query: 27 DFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALT 86
DF V E YE S GE + VRK+ +TL + + ++ GV +GYAGLKD+ A+T
Sbjct: 26 DFIVKEHLGYEMSGDGEFVALYVRKTDCNTLFVGEKLAKFAGVSERNMGYAGLKDRRAVT 85
Query: 87 TQF--ISLPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPL 144
Q+ + +P P + S F+ ++IL++ H+ KI+ G L+GN F + +
Sbjct: 86 EQWFCLQMPGMETP----DFSQFELDGVEILTVTRHNRKIRTGSLEGNYFDILLRGAEES 141
Query: 145 NAQKTKQVLEQIAQFGMPNYFGSQRFGKFNDNHQEGLKILQNQTKFAHQKLNAFLISSYQ 204
+ K + L+ +A FG PNYF QRFG+ N + L+ Q + K +K +F +S+ +
Sbjct: 142 DELKAR--LDFVANFGFPNYFTEQRFGRDGHNLTQALRWAQGEIKVKDRKKRSFYLSAAR 199
Query: 205 SYLFNALLSKRLEISKIISAFSVKENLEFFKQKNLSVDSDTLKTLKNQAHPFKILEGDVM 264
S +FN +++ R+E S I NQ P I++ +
Sbjct: 200 SEIFNLVVAARIEKSTI-----------------------------NQVLPNDIVQ--LA 228
Query: 265 CHYPYGKFFDALELEKEGERFLKKEVAPTGLLDGKKALYAKNLSLEIEKEFQ-HNLLSSH 323
+ + K + +L R +++ T L G+ L A + EI + + L
Sbjct: 229 GSHSWFKADEKEDLTALQVRLENQDILLTAPLIGEDILAASEIENEIVNQHSAFDPLMKQ 288
Query: 324 AKTLGSRR--------FFWVFVENVTSQYVKEKAQFELGFYLPKGSYASALLKEI 370
+ +RR F W F E L FYLP GSYA+AL++E+
Sbjct: 289 ERMKAARRPLLMKAKGFSWAF----------EPEGLRLKFYLPAGSYATALVREL 333
>ref|NP_289294.1| (NC_002655) putative hydrogenase subunit [Escherichia coli O157:H7
EDL933]
ref|NP_311626.1| (NC_002695) putative hydrogenase subunit [Escherichia coli O157:H7]
gb|AAG57852.1|AE005502_6 (AE005502) putative hydrogenase subunit [Escherichia coli O157:H7
EDL933]
dbj|BAB37022.1| (AP002562) putative hydrogenase subunit [Escherichia coli O157:H7]
Length = 349
Score = 115 bits (289), Expect = 6e-25
Identities = 97/365 (26%), Positives = 175/365 (47%), Gaps = 54/365 (14%)
Query: 23 SSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDK 82
++ DF V E +E GEH ++++ K+G +T + ++ L + E+ +AG KDK
Sbjct: 22 ANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDK 81
Query: 83 NALTTQFIS--LPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKK 140
+A+T Q++ +P K P L S FQ + ++L H K++LG LKGN F + ++
Sbjct: 82 HAVTEQWLCARVPGKEMPDL----SAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLRE 137
Query: 141 MTPLNAQKTKQVLEQIAQFGMPNYFGSQRFGKFNDNHQEGLKILQNQTKFAHQKLNAFLI 200
++ N +Q L I G+PNYFG+QRFG N Q L+ Q T + +F +
Sbjct: 138 VS--NRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWL 195
Query: 201 SSYQSYLFNALLSKRLEISKIISAFSVKENLEFFKQKNLSVDSDTLKTLKNQAHPFKILE 260
S+ +S LFN ++++RL+ +A ++++
Sbjct: 196 SAARSALFNQIVAERLK----------------------------------KADVNQVVD 221
Query: 261 GDVMCHYPYGKFFDAL--ELEKEGERFLKKEVAPTGLLDG-------KKALYAKNLSLEI 311
GD + G +F A EL + R KE+ T L G ++AL + ++
Sbjct: 222 GDALQLAGRGSWFVATTEELVELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAA 281
Query: 312 EKEFQHNLLSSHAKTLGSRRFFWVFVENVTSQYVKEKAQFELGFYLPKGSYASALLKEIK 371
E E Q L+ K +RR ++ + ++ + + E+ F+LP GS+A+++++E+
Sbjct: 282 ETELQALLV--REKVEAARRAMLLYPQQLSWNW-WDDVTVEIRFWLPAGSFATSVVRELI 338
Query: 372 HEKGE 376
+ G+
Sbjct: 339 NTTGD 343
>ref|NP_230181.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||E82311 conserved hypothetical protein VC0530 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF93698.1| (AE004139) conserved hypothetical protein [Vibrio cholerae]
Length = 361
Score = 115 bits (289), Expect = 6e-25
Identities = 91/351 (25%), Positives = 171/351 (47%), Gaps = 44/351 (12%)
Query: 28 FCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALTT 87
F V+EV Y + GEH ++++RK+G +T + ++ GV + +AGLKD++A+T
Sbjct: 28 FQVNEVLGYSLTGHGEHLMVRIRKTGENTSFVANELAKACGVPSRAVSWAGLKDRHAVTE 87
Query: 88 QFISLPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQ 147
Q++S+ + + Q +++IL + H K++ G L+GN F + +++ + A
Sbjct: 88 QWLSVHLPNGETPDFSAFLAQYPSIEILEVTRHDKKLRPGDLQGNEFVVTLSEVSDVAAV 147
Query: 148 KTKQVLEQIAQFGMPNYFGSQRFGKFNDNHQEGLKILQNQTKFAHQKLNAFLISSYQSYL 207
++ LE +A+ G+PNYFGSQRFG+ +N E + ++ + +Q + +S+ +S++
Sbjct: 148 LSR--LETVAELGVPNYFGSQRFGRHGNNLSEARRWGRDNVRSRNQNQRSLYLSAARSWI 205
Query: 208 FNALLSKRLEISKIISAFSVKENLEFFKQKNLSVDSDTLKTLKNQAHPFKILEGDVMCHY 267
FN ++SKR+E + A ++ ++ +Q+ +VD D
Sbjct: 206 FNQIVSKRIE--QGCFARFIEGDIALAEQQMFNVDGD----------------------- 240
Query: 268 PYGKFFDALELEKEGERFLKKEVAPTGLLDGKKALYAKNLSL-----EIEKEFQHNLLSS 322
L +R EVA + L G AL +L E++ E L
Sbjct: 241 ----------LALWDQRLQAGEVAISAALAGDNALPTSGQALPLEQAELDAEPDLMALIR 290
Query: 323 HAKTLGSRRFFWVFVENVTSQYVKEKAQFELGFYLPKGSYASALLKEIKHE 373
+ RR + +N++ Q ++ Q L F L GS+A++L++E+ E
Sbjct: 291 GNRMRHDRRAIALKAQNLSWQV--QEDQITLRFSLDAGSFATSLVRELIEE 339
>ref|NP_457317.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD06034.1| (AL627276) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 349
Score = 114 bits (284), Expect = 2e-24
Identities = 97/363 (26%), Positives = 174/363 (47%), Gaps = 50/363 (13%)
Query: 23 SSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDK 82
++ DF V E + GEH ++++ K+G +T + + ++ L + E+ +AG KDK
Sbjct: 22 ANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADVLAKFLKIHAREVSFAGQKDK 81
Query: 83 NALTTQFIS--LPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKK 140
+A+T Q++ +P K P + S FQ + K+L H K++LG LKGN F + ++
Sbjct: 82 HAVTEQWLCARVPGKEMP----DFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLRE 137
Query: 141 MTPLNAQKTKQVLEQIAQFGMPNYFGSQRFGKFNDNHQEGLKILQNQTKFAHQKLNAFLI 200
++ +T+ L+ I G+PNYFG+QRFG N Q L+ Q+ + +F +
Sbjct: 138 ISDRRDVETR--LQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWL 195
Query: 201 SSYQSYLFNALLSKRLEISKIISAFSVKENLEFFKQKNLSVDSDTLKTLKNQAHPFKILE 260
S+ +S LFN ++ +RL+ K NQ +++
Sbjct: 196 SAARSALFNQIVHQRLK-----------------------------KPDFNQ-----VVD 221
Query: 261 GDVMCHYPYGKFFDAL--ELEKEGERFLKKEVAPTGLLDGKKALYAKNLSLEIEKE--FQ 316
GD + G +F A EL + R +KE+ T L G + +L E++ Q
Sbjct: 222 GDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQ 281
Query: 317 HNLLSS---HAKTLGSRRFFWVFVENVTSQYVKEKAQFELGFYLPKGSYASALLKEIKHE 373
+L S K SRR ++ + ++ + + EL F+LP GS+A+++++E+ +
Sbjct: 282 ETVLQSLLLREKVEASRRAMLLYPQQLSWNW-WDDVTVELRFWLPAGSFATSVVRELINT 340
Query: 374 KGE 376
G+
Sbjct: 341 MGD 343
>ref|NP_417225.1| (NC_000913) putative hydrogenase subunit [Escherichia coli K12]
sp|Q57261|YGBO_ECOLI Protein ygbO
pir||I69731 hypothetical protein b2745 - Escherichia coli
gb|AAA69255.1| (U29579) was ORF_f292 and ORF_f255 before splice; ORF_f349
[Escherichia coli]
gb|AAA79838.1| (L07942) ORF1 [Escherichia coli]
gb|AAC75787.1| (AE000358) putative hydrogenase subunit [Escherichia coli K12]
Length = 349
Score = 114 bits (284), Expect = 2e-24
Identities = 96/365 (26%), Positives = 174/365 (47%), Gaps = 54/365 (14%)
Query: 23 SSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDK 82
++ DF V E +E GEH ++++ K+G +T + ++ L + E+ +AG KDK
Sbjct: 22 ANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDK 81
Query: 83 NALTTQFIS--LPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKK 140
+A+T Q++ +P K P L S FQ + ++L H K++LG LKGN F + ++
Sbjct: 82 HAVTEQWLCARVPGKEMPDL----SAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLRE 137
Query: 141 MTPLNAQKTKQVLEQIAQFGMPNYFGSQRFGKFNDNHQEGLKILQNQTKFAHQKLNAFLI 200
++ N +Q L I G+PNYFG+QRFG N Q + Q T + +F +
Sbjct: 138 VS--NRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWL 195
Query: 201 SSYQSYLFNALLSKRLEISKIISAFSVKENLEFFKQKNLSVDSDTLKTLKNQAHPFKILE 260
S+ +S LFN ++++RL+ +A ++++
Sbjct: 196 SAARSALFNQIVAERLK----------------------------------KADVNQVVD 221
Query: 261 GDVMCHYPYGKFFDAL--ELEKEGERFLKKEVAPTGLLDG-------KKALYAKNLSLEI 311
GD + G +F A EL + R KE+ T L G ++AL + ++
Sbjct: 222 GDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAA 281
Query: 312 EKEFQHNLLSSHAKTLGSRRFFWVFVENVTSQYVKEKAQFELGFYLPKGSYASALLKEIK 371
E E Q L+ K +RR ++ + ++ + + E+ F+LP GS+A+++++E+
Sbjct: 282 ETELQALLV--REKVEAARRAMLLYPQQLSWNW-WDDVTVEIRFWLPAGSFATSVVRELI 338
Query: 372 HEKGE 376
+ G+
Sbjct: 339 NTTGD 343
>ref|NP_461849.1| (NC_003197) paral putative hydrogenase subunit [Salmonella
typhimurium LT2]
gb|AAL21808.1| (AE008833) paral putative hydrogenase subunit [Salmonella
typhimurium LT2]
Length = 349
Score = 112 bits (280), Expect = 7e-24
Identities = 97/363 (26%), Positives = 173/363 (46%), Gaps = 50/363 (13%)
Query: 23 SSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDK 82
++ DF V E + GEH ++++ K+G +T + ++ L + E+ +AG KDK
Sbjct: 22 ANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDK 81
Query: 83 NALTTQFIS--LPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKK 140
+A+T Q++ +P K P + S FQ + K+L H K++LG LKGN F + ++
Sbjct: 82 HAVTEQWLCARVPGKEMP----DFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLRE 137
Query: 141 MTPLNAQKTKQVLEQIAQFGMPNYFGSQRFGKFNDNHQEGLKILQNQTKFAHQKLNAFLI 200
++ +T+ L+ I G+PNYFG+QRFG N Q L+ Q+ + +F +
Sbjct: 138 ISDRRDVETR--LQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWL 195
Query: 201 SSYQSYLFNALLSKRLEISKIISAFSVKENLEFFKQKNLSVDSDTLKTLKNQAHPFKILE 260
S+ +S LFN ++ +RL+ K NQ +++
Sbjct: 196 SAARSALFNQIVHQRLK-----------------------------KPDFNQ-----VVD 221
Query: 261 GDVMCHYPYGKFFDAL--ELEKEGERFLKKEVAPTGLLDGKKALYAKNLSLEIEKE--FQ 316
GD + G +F A EL + R +KE+ T L G + +L E++ Q
Sbjct: 222 GDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQ 281
Query: 317 HNLLSS---HAKTLGSRRFFWVFVENVTSQYVKEKAQFELGFYLPKGSYASALLKEIKHE 373
+L S K SRR ++ + ++ + + EL F+LP GS+A+++++E+ +
Sbjct: 282 ETVLQSLLLREKVEASRRAMLLYPQQLSWNW-WDDVTVELRFWLPAGSFATSVVRELINT 340
Query: 374 KGE 376
G+
Sbjct: 341 MGD 343
>ref|NP_637074.1| (NC_003902) hydrogenase subunit [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gb|AAM40998.1| (AE012272) hydrogenase subunit [Xanthomonas campestris pv.
campestris str. ATCC 33913]
Length = 367
Score = 107 bits (266), Expect = 3e-22
Identities = 71/223 (31%), Positives = 116/223 (51%), Gaps = 18/223 (8%)
Query: 8 LLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQIL 67
L A+ A + S A DF V E+P ++ S GEH ++ VRK G +T + + +Q
Sbjct: 7 LPRAHGAAVLTAAMRSVAEDFQVDELPAFDASGEGEHLLLTVRKRGQNTAYVAKRLAQWA 66
Query: 68 GVRIAELGYAGLKDKNALTTQFIS--LPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIK 125
G+ +GYAGLKD++A+TTQ S LPK+ AP + S + +++++ +H+ K++
Sbjct: 67 GIAEMGIGYAGLKDRHAVTTQRFSVHLPKRIAP----DLSALDDDDMQVVEHTWHNRKLQ 122
Query: 126 LGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIAQFGMPNYFGSQRFGK-----------FN 174
G L GNRF + +++ A + L IA G+PN+FG QRFG+ F
Sbjct: 123 RGALHGNRFVLTLREVVGDQAVIDAR-LHAIAARGIPNWFGEQRFGRDGGNVAAALAMFG 181
Query: 175 DNHQEGLKILQNQTKFAHQKLNAFLISSYQSYLFNALLSKRLE 217
Q + + + L+S+ +S LFN +L+ R+E
Sbjct: 182 HTRQPDGTLAPAPKRRLRNDQRSLLLSAARSALFNQVLTARVE 224
>ref|NP_642054.1| (NC_003919) hydrogenase subunit [Xanthomonas axonopodis pv. citri
str. 306]
gb|AAM36590.1| (AE011804) hydrogenase subunit [Xanthomonas axonopodis pv. citri
str. 306]
Length = 369
Score = 100 bits (250), Expect = 2e-20
Identities = 67/225 (29%), Positives = 117/225 (51%), Gaps = 22/225 (9%)
Query: 8 LLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQIL 67
L A+ A + S+ DF V E+P +E S GEH ++ VRK G +T + + +
Sbjct: 7 LPRAHGAAVLSAAMRSTPDDFQVDELPAFEPSGEGEHLLLTVRKRGQNTAYIAKKLAHWA 66
Query: 68 GVRIAELGYAGLKDKNALTTQFIS--LPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIK 125
G+ + YAGLKD++A+TTQ S LP++ AP + + + ++++ ++H+ K++
Sbjct: 67 GIAEMGVSYAGLKDRHAVTTQRFSVHLPRRIAP----DIAALDDTQMQVVESSWHNRKLQ 122
Query: 126 LGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIAQFGMPNYFGSQRFGKFNDNHQEGLKIL- 184
G L GNRF + +++ +Q L+ IA G+PN+FG QRFG+ N L +
Sbjct: 123 RGALHGNRFVLTLRQVQG-ERDAIEQRLQAIAARGIPNWFGEQRFGRDGGNVAAALAMFG 181
Query: 185 -------------QNQTKFAHQKLNAFLISSYQSYLFNALLSKRL 216
++ + H + + L+S+ +S LFN +L R+
Sbjct: 182 HVQADDGTLLPAPTSRRRLRHDQ-RSMLLSAARSALFNRVLGARV 225
>ref|NP_252316.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||H83193 conserved hypothetical protein PA3626 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG07014.1|AE004782_12 (AE004782) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 355
Score = 100 bits (249), Expect = 3e-20
Identities = 101/355 (28%), Positives = 151/355 (42%), Gaps = 51/355 (14%)
Query: 25 ARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNA 84
A DF V EV S GEH + V K GL+T E + + GV+ + YAGLKD+ A
Sbjct: 28 AEDFQVDEVLEIPLSGEGEHLWLWVEKRGLNTEEAARRLGRAAGVQQKNVSYAGLKDRQA 87
Query: 85 LTTQFIS--LPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMT 142
LT Q+ S LP K P + + +L+IL H K++ G N F +R +T
Sbjct: 88 LTRQWFSLHLPGKADP----DLGAAEGADLRILRCTRHSRKLQRGAHAANGFTLR---LT 140
Query: 143 PLNAQKT--KQVLEQIAQFGMPNYFGSQRFGKFNDNHQEGLKILQNQTKFAHQKLNAFLI 200
L A++ LE+IA G+PNYFG QRFG N + + A++ L + +
Sbjct: 141 GLRAERAPLDARLERIAADGVPNYFGLQRFGHGGGNLVDARSCAEQDLLPANRNLRSRFL 200
Query: 201 SSYQSYLFNALLSKRLEISKIISAFSVKENLEFFKQKNLSVDSDTLKTLKNQAHPFKILE 260
S+ +SYLFN LL++R+ + +
Sbjct: 201 SAGRSYLFNRLLAERVA----------------------------------EGSWNRAAV 226
Query: 261 GDVMCHYPYGKFFDALELEKEGERFLKKEVAPTGLL--DGKKALYAKNLSLEIEKEFQHN 318
GD++ FF A E E R ++ PTG L +G A L E+ +
Sbjct: 227 GDLLAFTDSRSFFLAGEEECRDARLAALDLHPTGPLWGEGDPPSGAGVLDRELALAGREP 286
Query: 319 LLSSHAKTLG---SRRFFWVFVENVTSQYVKEKAQFELGFYLPKGSYASALLKEI 370
L G RR + ++ + Y E +L F LP G +A+ +++EI
Sbjct: 287 ALCRWLAKAGMAHERRILRLPIQGLAWHY-PEPDVLQLEFVLPAGCFATVVVREI 340
>ref|NP_248367.1| (NC_000909) conserved hypothetical protein [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
sp|Q58759|YD64_METJA Hypothetical protein MJ1364
pir||C64470 hypothetical protein MJ1364 - Methanococcus jannaschii
gb|AAB99372.1| (U67576) conserved hypothetical protein [Methanococcus jannaschii]
[Methanocaldococcus jannaschii]
Length = 487
Score = 94.4 bits (233), Expect = 2e-18
Identities = 101/388 (26%), Positives = 171/388 (44%), Gaps = 59/388 (15%)
Query: 27 DFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALT 86
DF V E+ + + ++ K + +L+ ++ + + ++GY GLKD++ALT
Sbjct: 100 DFIVEEIIDFNKIAGDRCYLYKLTKRNIESLKAFSYIAKKFKIPLKDIGYCGLKDRHALT 159
Query: 87 TQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNA 146
TQ+IS+PKKY L + E NLK L L + LG L+GNRF + + + +
Sbjct: 160 TQYISIPKKYGKL------SLDEPNLK-LELIGESKFLLLGDLEGNRFTITVRGLKKEDI 212
Query: 147 QKTKQVLEQIAQFGMPNYFGSQRFGKFND-----------NHQEGLKILQNQTKFAHQK- 194
K K+ L+ + +FG PNYF SQRFG D N++E +KIL + K + +K
Sbjct: 213 PKIKENLKYL-EFGAPNYFDSQRFGSVFDKKFIAKEVIKGNYEEAVKILLTKYKKSEKKL 271
Query: 195 ---LNAFLISSY------QSYLFNALLSKRLEISKIISAFSVKENLEFFKQKNLSVDSDT 245
L F+ ++ Y+ + RL ++ + +K++ ++ +K LS D
Sbjct: 272 IKDLKRFIDKNWGDWDKIWEYIKENNIKSRLYVNMV---KELKKSNDY--KKALSYVDDR 326
Query: 246 LKTL--------------KNQAHPFKILEGDVMCHYPYGKFFDALELEKEGERFLKKEVA 291
LK + K + E V Y G ++++E LK +
Sbjct: 327 LKKIFVAAYQSYLWNECVKELLRKYVPEEDRVYYEYECGTLMFYKKMDEEVFNILKDKKF 386
Query: 292 PTGLLDGKKALYAKNLSLEIEKE-----FQHNLLSSHAKTLGSRRFFWVFVENV------ 340
PT D + + K + EI K + N + K + S R +N+
Sbjct: 387 PTIAPDIEYSGEEKEIIEEILKREGLTMEELNNIGELGKFIYSERKILSIPKNLKIGEFE 446
Query: 341 TSQYVKEKAQFELGFYLPKGSYASALLK 368
+ K K + L + L KGSYA+ ++K
Sbjct: 447 EDELNKGKYKITLSYELEKGSYATIIIK 474
>ref|NP_070505.1| (NC_000917) conserved hypothetical protein [Archaeoglobus fulgidus]
pir||D69459 conserved hypothetical protein AF1677 - Archaeoglobus fulgidus
gb|AAB89568.1| (AE000987) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 411
Score = 90.1 bits (222), Expect = 4e-17
Identities = 104/389 (26%), Positives = 160/389 (40%), Gaps = 57/389 (14%)
Query: 27 DFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALT 86
DF V E+ + S+ G+ +I+V K TL ++ S LG+ + +AG KDK ALT
Sbjct: 27 DFYVEEIAEFNLSDEGDFLIIRVEKKNWDTLNFARVLSNALGISQKRISFAGTKDKRALT 86
Query: 87 TQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNA 146
Q+ S+ + ++ K+ KI + Y I+LG L GN F R + +
Sbjct: 87 VQYFSI----YGVKKEEIERVNLKDAKIEVIGYARRAIQLGDLLGN--FFRIRVYGCRDG 140
Query: 147 QKTKQVLEQIAQFGMPNYFGSQRFGKFN-DNHQEGLKILQNQTKFA-------------- 191
+ ++ ++ + G PN+FG QRFG H+ G ILQN + A
Sbjct: 141 EIFQETRNELMEKGTPNFFGLQRFGSIRFITHEVGKLILQNNYEEAFWVYVAKPFEGENE 200
Query: 192 -------------HQKLNAFLISSYQSYLFNALLSKRLEISKIISAFSVKENLE--FFKQ 236
KL + Y Y N L R S+ + S+ +NL+ F
Sbjct: 201 EVRKIREILWETRDAKLGLRELPKYLRYERNLLQKLREGKSEEEALLSLPKNLKMMFVHA 260
Query: 237 KNLSVDSDTLKTLKNQAHPFKIL-EGDVMCHYPY---GKFFDALELE--KEGERFLKKE- 289
+ + L Q K L EGD C+ + F D E+E + RFL KE
Sbjct: 261 YQSYIFNRLLSERIRQFGSLKTLEEGDFACYLTFKTRPTFSDCSEVEVNEARVRFLVKER 320
Query: 290 VAPTGL----LDGKKALYAKNLSLEIEKEFQHNLLSSHAK-----TLGSRRFFWVFVENV 340
VA L D K +++ ++L+ E +L S K + GS R +E+
Sbjct: 321 VASLALPLVGYDTKLKGWSR-IALDFLSEDNLDLSSFKTKHKEFSSSGSYRPADTLIEHT 379
Query: 341 TSQYVKEKAQFELGFYLPKGSYASALLKE 369
+ FYLP+G YA+ L+E
Sbjct: 380 GLSFTDS----TFSFYLPRGCYATVFLRE 404
>ref|NP_214182.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
pir||F70448 conserved hypothetical protein aq_1723 - Aquifex aeolicus
gb|AAC07586.1| (AE000753) hypothetical protein [Aquifex aeolicus]
Length = 385
Score = 85.9 bits (211), Expect = 7e-16
Identities = 43/155 (27%), Positives = 83/155 (52%), Gaps = 1/155 (0%)
Query: 17 IDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGY 76
+D +F V E+ + G++A ++K ++TL+ ++ S G+ + +G+
Sbjct: 1 MDIRIKEKPEEFYVKEIKKLDLKEKGQYAYFLLKKKDMTTLDAVRHISHRFGIPLKNIGF 60
Query: 77 AGLKDKNALTTQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFM 136
AGLKDK A+T Q+IS+ + K ++ +NL++ L + ++LG ++GN F +
Sbjct: 61 AGLKDKKAVTEQYISVKDLNEEKIRK-MDGYRTENLELKFLGFSDKGLELGEIEGNYFEV 119
Query: 137 RFKKMTPLNAQKTKQVLEQIAQFGMPNYFGSQRFG 171
+ +T + + ++ E + +G NYFG QRFG
Sbjct: 120 VVRGVTKYHRRVFPRMKELVENYGCENYFGEQRFG 154
>ref|NP_276642.1| (NC_000916) conserved protein [Methanothermobacter
thermautotrophicus] [Methanothermobacter
thermautotrophicus str. Delta H]
pir||H69070 conserved hypothetical protein MTH1529 - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB86003.1| (AE000913) conserved protein [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 415
Score = 85.5 bits (210), Expect = 9e-16
Identities = 58/170 (34%), Positives = 92/170 (54%), Gaps = 8/170 (4%)
Query: 26 RDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNAL 85
RDF V E+PL E S +G + I + K G +TL++L ++ L + +G+AG+KDK A+
Sbjct: 23 RDFEVEEIPLTEPSGSGPNTWIWIEKEGRTTLDVLLDIARELHLDRRRMGFAGMKDKRAV 82
Query: 86 TTQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKM---T 142
T Q+I + AP E + +N+K L + + K+++G L GNRF + +
Sbjct: 83 TRQWICV-SNTAP-SEVKAIEERIRNVKFLRVTANEKKLRMGQLLGNRFRILIRDTEIDE 140
Query: 143 PLNAQKTKQVLEQIAQFGMPNYFGSQRFGKFNDN-HQEGLKILQNQTKFA 191
PL + K L+++ G+PNY+G QRFG N H G ++ K A
Sbjct: 141 PL--ETAKATLQELEDKGVPNYYGWQRFGSPRANTHLVGRALVHGDVKGA 188
>ref|NP_618162.1| (NC_003552) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM06642.1| (AE011031) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 441
Score = 78.2 bits (191), Expect = 1e-13
Identities = 105/423 (24%), Positives = 172/423 (39%), Gaps = 70/423 (16%)
Query: 9 LHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILG 68
L++ N + DF V E+ E G + V+++ K T + ++IL
Sbjct: 17 LYSTNTEGLGGRLRQEVEDFIVKEITNREEGKDGRYLVLELTKRDWDTHHFTRTLAKILQ 76
Query: 69 VRIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGH 128
+ + AG KDK ALTTQ IS+ A +EK K++++ L ++LG
Sbjct: 77 ISQKRISVAGTKDKRALTTQKISIFDIDALEIEK----IHLKDVELKVLGRSRKSVELGD 132
Query: 129 LKGNRFFMRFKKMTPLNAQKTKQVLEQ-----IAQFGMPNYFGSQRFGKFND-NHQEGLK 182
L GN F + + ++ + ++T+ +LE+ + Q G+PN+FG QRFG H G
Sbjct: 133 LWGNEFIITIRDISS-SPEETRTILEKTNSKVLTQGGVPNFFGVQRFGSVRSVTHLVGKA 191
Query: 183 ILQ-------------------NQTKFAHQKLNAF-----------LISSYQSYLFNALL 212
I++ +TK A Q + L ++ + N L+
Sbjct: 192 IVEGNFEKAAMLYIAEPFPEEPEETKAARQFVKETRDFKEGLKTYPLRLGHERAMMNHLI 251
Query: 213 SKRLEISKIISAFSV--KENLEFFKQKNLSVDSDTL--KTLKNQAHPFKILEGDVMCHYP 268
S + S AFSV K F S + + + +++ + +EGD++C
Sbjct: 252 SNPEDYS---GAFSVLPKNLYRMFVHAYQSYIYNMILCRRIESGISLNRAVEGDIVCFRN 308
Query: 269 YGKFFDALELEK-------EGERFLKKEVA-PTGLLDGKKALYAKNLSLEIEKEFQHNLL 320
D+ + EK R +K A T L G +A + EIE + L
Sbjct: 309 EAGLPDSSKTEKVTSETVNAMNRLIKHGRAFITAPLPGFNTEFASGVPGEIESKILKELR 368
Query: 321 SS----------HAKTLGSRRFFWVFVENVTSQYVKE----KAQFELGFYLPKGSYASAL 366
S + G+RR + VE E K++ L F LPKGSYA+ +
Sbjct: 369 VSLEGFNVEEFPEMSSKGTRREVLLQVEPKFEVGEDELNPGKSKTVLEFMLPKGSYATTV 428
Query: 367 LKE 369
L+E
Sbjct: 429 LRE 431
>ref|NP_112582.1| (NM_031292) hypothetical protein DKFZp434G1415 [Homo sapiens]
emb|CAB66693.1| (AL136759) hypothetical protein [Homo sapiens]
Length = 701
Score = 73.2 bits (178), Expect = 5e-12
Identities = 46/152 (30%), Positives = 76/152 (49%), Gaps = 8/152 (5%)
Query: 44 HAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALTTQFISLPKKYAPLLEKN 103
+ +RK L E + + LGV ++ YAGLKDK A+T Q + + K L+
Sbjct: 302 YTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNI 361
Query: 104 TSNFQEKNLKILSLNYHHNKIKLGHLKGNRF---FMRFKKMTPLNA---QKTKQVLEQIA 157
++K + + ++ + ++LG LKGN F KK +A ++ + +E +
Sbjct: 362 EKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDSANLRERIMEAIENVK 421
Query: 158 QFGMPNYFGSQRFGKFNDNH--QEGLKILQNQ 187
+ G NY+G QRFGK H Q GL +L+N+
Sbjct: 422 KKGFVNYYGPQRFGKGRKVHTDQIGLALLKNE 453
>ref|NP_648231.1| (NM_139974) CG6745 gene product [Drosophila melanogaster]
gb|AAF50409.1| (AE003555) CG6745 gene product [Drosophila melanogaster]
gb|AAL39337.1| (AY069192) GH24787p [Drosophila melanogaster]
Length = 734
Score = 73.2 bits (178), Expect = 5e-12
Identities = 42/156 (26%), Positives = 83/156 (52%), Gaps = 4/156 (2%)
Query: 38 FSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALTTQFISLPKKYA 97
+S ++ V K+ L T ++ + L +R +++ Y+G+KDK A TTQ S+ ++
Sbjct: 231 WSFPADYVTFLVHKTNLVTSDVASTLAARLNLRPSQVNYSGIKDKRAKTTQKFSVKRRTP 290
Query: 98 PLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIA 157
+ + ++N+ I + + N +KLG L+GNRF + + + ++ +Q L+ +
Sbjct: 291 ESILVAARS--QRNVHIGNFGFESNTLKLGDLQGNRFRIALRHIAKEKREEIEQALQSLK 348
Query: 158 QFGMPNYFGSQRFGKFND--NHQEGLKILQNQTKFA 191
+ G NY+G QRFG ++ G+ +L++ K A
Sbjct: 349 ERGFINYYGLQRFGNSASVPTYEVGVALLKHDYKLA 384
>ref|XP_128203.1| (XM_128203) RIKEN cDNA 3000003F02 [Mus musculus]
Length = 702
Score = 72.0 bits (175), Expect = 1e-11
Identities = 48/152 (31%), Positives = 79/152 (51%), Gaps = 8/152 (5%)
Query: 44 HAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALTTQFISLPKKYAPLLEKN 103
+ ++K L T E + + + LGV ++ YAGLKDK A+T Q + + K L+
Sbjct: 302 YTAFTLQKENLETFEAIGLLAVKLGVIPSDFSYAGLKDKRAITYQSMVVKKVTPERLKSI 361
Query: 104 TSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKM-TPLN--AQKTKQVLEQIAQF- 159
++K + + ++ + ++LG LKGN F + + + LN A T+++LE I
Sbjct: 362 KEEIEKKRMNVFNIRSVGDCLRLGQLKGNHFEIIIRHLRNQLNDSANLTERILEAIENVK 421
Query: 160 --GMPNYFGSQRFGKFN--DNHQEGLKILQNQ 187
G NY+G QRFGK Q GL +L+N+
Sbjct: 422 NKGFVNYYGPQRFGKGQKIQTDQIGLALLKNE 453
>ref|NP_579284.1| (NC_003413) hypothetical protein [Pyrococcus furiosus DSM 3638]
gb|AAL81679.1| (AE010256) hypothetical protein [Pyrococcus furiosus DSM 3638]
Length = 407
Score = 71.2 bits (173), Expect = 2e-11
Identities = 50/162 (30%), Positives = 84/162 (50%), Gaps = 16/162 (9%)
Query: 27 DFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALT 86
DF V EV G+ + ++K T+ ++ ++ +GV +E+G+AG KD++A+T
Sbjct: 27 DFIVKEVIPKSIFKAGKCKIYILKKKNWETMAAIKEIAKRVGVHYSEIGFAGTKDRHAVT 86
Query: 87 TQFISLPKKYAPLLEKNTSNFQEKNLKILSLNY--HHNKIKLGHLKGNRFFMRFKKMTPL 144
Q+IS+ + N +E ++ + L + + +KLG L GN F +R ++ P
Sbjct: 87 YQYISICRDV---------NLEEVKIRDIELKFVGYGRPLKLGFLLGNFFKIRVRESNP- 136
Query: 145 NAQKTKQVLEQIAQ-FGMPNYFGSQRFG-KFNDNHQEGLKIL 184
V+E+ + G PNYFG QRFG K + NH G +L
Sbjct: 137 --SLLPSVIEEAKEKGGFPNYFGIQRFGEKRSVNHVVGKLLL 176
>ref|NP_632138.1| (NC_003901) conserved protein [Methanosarcina mazei Goe1]
gb|AAM29810.1| (AE013232) conserved protein [Methanosarcina mazei Goe1]
Length = 438
Score = 71.2 bits (173), Expect = 2e-11
Identities = 50/168 (29%), Positives = 84/168 (49%), Gaps = 10/168 (5%)
Query: 9 LHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILG 68
L++ + + DF V E+ E G++ ++++ K T + + S+IL
Sbjct: 14 LYSTDTTGLGGQLRQEIEDFIVKEITNREEGEEGKYLIVELTKRDWDTHHLTRTLSRILQ 73
Query: 69 VRIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGH 128
V + AG KDK ALTTQ IS+ A +EK K++++ L ++LG
Sbjct: 74 VSQKRISVAGTKDKRALTTQKISIFDTDASEIEK----IHLKDIELKVLGRSRKSVELGD 129
Query: 129 LKGNRFFMRFKKMTPLNAQKTKQVL-----EQIAQFGMPNYFGSQRFG 171
L GN F + + + + ++T+ +L E +AQ G+PN+FG QRFG
Sbjct: 130 LWGNDFRITVRNIEN-SPEETEALLKKTTDEILAQGGVPNFFGIQRFG 176
>dbj|BAB67790.1| (AB067484) KIAA1897 protein [Homo sapiens]
Length = 645
Score = 70.1 bits (170), Expect = 4e-11
Identities = 47/146 (32%), Positives = 73/146 (49%), Gaps = 4/146 (2%)
Query: 42 GEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALTTQFISLPKKYAPLLE 101
G + + K T++ + + S+ L V+ Y G KDK A+T Q I++ K A L
Sbjct: 239 GSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKITAQRLA 298
Query: 102 KNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIAQFGM 161
N N K+ + +Y N +KLG L+GN F + + +T + Q +Q + + + G
Sbjct: 299 H--LNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRNITGTDDQ-VQQAMNSLKEIGF 355
Query: 162 PNYFGSQRFGKFN-DNHQEGLKILQN 186
NY+G QRFG +Q G ILQN
Sbjct: 356 INYYGMQRFGTTAVPTYQVGRAILQN 381
>ref|NP_143398.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
pir||H71030 hypothetical protein PH1538 - Pyrococcus horikoshii
dbj|BAA30648.1| (AP000006) 409aa long hypothetical protein [Pyrococcus horikoshii]
Length = 409
Score = 69.7 bits (169), Expect = 5e-11
Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 12/160 (7%)
Query: 27 DFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALT 86
DF V EV G + ++K T+ ++ ++ +G+ +E+G+AG KD++A+T
Sbjct: 28 DFIVKEVIPKSIFRGGRCRIYLLKKKNWETMAAIKEIAKRIGIHYSEIGFAGTKDRHAVT 87
Query: 87 TQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNA 146
Q+IS+ + E + N K++ + + Y +KLG L GN F +R + TP
Sbjct: 88 YQYISICR------EVDLENVAIKDVTLRFVGY-GRPLKLGLLLGNFFKIRVRDTTP--- 137
Query: 147 QKTKQVLEQIAQ-FGMPNYFGSQRFG-KFNDNHQEGLKIL 184
+ +L++ + G PNYFG QRFG K + NH G +L
Sbjct: 138 ELLPNILKEAKEKGGFPNYFGIQRFGEKRSVNHIVGKLLL 177
>dbj|BAB89856.1| (AP003295) hypothetical protein~similar to Arabidopsis thaliana
chromosome 3, At3g04820 [Oryza sativa (japonica
cultivar-group)]
Length = 606
Score = 67.4 bits (163), Expect = 3e-10
Identities = 52/181 (28%), Positives = 84/181 (45%), Gaps = 14/181 (7%)
Query: 69 VRIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGH 128
+R G+AG KDK A+TTQ +++ K A L S +K+ +Y + LG
Sbjct: 185 IRPRSFGFAGTKDKRAVTTQQVTVFKVQASRLVALNSKLI--GIKVGDFSYVKEGLALGQ 242
Query: 129 LKGNRFFMRFKKMTPLNAQKTKQVLEQIAQFGMPNYFG--SQRFGKFNDNHQEGLKILQN 186
L GNRF + + + + K L+ + G NY+G QR K+ N+ + L +
Sbjct: 243 LMGNRFTITLRSVVTESEDVIKAALDGLITNGFINYYGLQLQRLKKYPGNYLQALMAIP- 301
Query: 187 QTKFAHQKLNAFLISSYQSYLFNALLSKRLE---ISKIISAFSVKENLEFFKQKNLSVDS 243
+ L + SYQSYL+N S R++ IS+++ V + F+Q L S
Sbjct: 302 ------RTLRLMYVHSYQSYLWNHAASMRVQKYGISRVVEGDLVYKKEAPFEQGALKATS 355
Query: 244 D 244
+
Sbjct: 356 E 356
>ref|NP_126313.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
pir||A75183 hypothetical protein PAB0430 - Pyrococcus abyssi (strain Orsay)
emb|CAB49544.1| (AJ248284) hypothetical protein [Pyrococcus abyssi]
Length = 406
Score = 67.4 bits (163), Expect = 3e-10
Identities = 49/164 (29%), Positives = 89/164 (53%), Gaps = 12/164 (7%)
Query: 27 DFCVHEV-PLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNAL 85
DF V E+ P F G + ++K T+ ++ ++ +G+ +E+G+AG KD++A+
Sbjct: 24 DFIVREIIPKSIFK--GNCQIYLMKKRNWETIAAIKEIAKRIGIHYSEIGFAGTKDRHAV 81
Query: 86 TTQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLN 145
T Q+IS+ + +EK ++ LK + + +KLG L GN F +R + +
Sbjct: 82 TYQYISVCRDVRKEVEK--LKIRDVELKFVG---YGRPLKLGFLLGNFFLIRVRDVK--R 134
Query: 146 AQKTKQVLEQI-AQFGMPNYFGSQRFG-KFNDNHQEGLKILQNQ 187
+ +++E++ + G PNYFG QRFG K + NH G +L+ +
Sbjct: 135 PELIPKIIEELKIKGGFPNYFGIQRFGEKRSVNHIVGKLLLEGK 178
>ref|NP_014886.1| (NC_001147) Hypothetical ORF; Yor243cp [Saccharomyces cerevisiae]
sp|Q08647|YO7T_YEAST Hypothetical 77.0 kDa protein in HES1-SEC63 intergenic region
pir||S67136 hypothetical protein YOR243c - yeast (Saccharomyces cerevisiae)
emb|CAA99464.1| (Z75151) ORF YOR243c [Saccharomyces cerevisiae]
Length = 676
Score = 67.0 bits (162), Expect = 3e-10
Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 8/149 (5%)
Query: 49 VRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQ 108
+ K T+E + + +++L V + YAG KD+ A+T Q +S+ K L N N
Sbjct: 224 LHKENKDTMEAVNVITKLLRVPSRVIRYAGTKDRRAVTCQRVSISK--IGLDRLNALNRT 281
Query: 109 EKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVL-----EQIAQFGMPN 163
K + I + N+ + LG LKGN F + + +T N++ + + + + +++ G N
Sbjct: 282 LKGMIIGNYNFSDASLNLGDLKGNEFVVVIRDVTTGNSEVSLEEIVSNGCKSLSENGFIN 341
Query: 164 YFGSQRFGKFN-DNHQEGLKILQNQTKFA 191
YFG QRFG F+ H G ++L + K A
Sbjct: 342 YFGMQRFGTFSISTHTIGRELLLSNWKKA 370
>emb|CAA22009.1| (AL033502) hypothetical protein [Candida albicans]
Length = 747
Score = 64.3 bits (155), Expect = 2e-09
Identities = 48/186 (25%), Positives = 85/186 (44%), Gaps = 23/186 (12%)
Query: 49 VRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQ 108
V K T+E+ ++L + + YAG KD+ T Q S+ + +L N N
Sbjct: 272 VYKQNRDTMEVANNIGKLLRINHKFINYAGTKDRRGATCQRFSI--NHGKVLRVNALNKS 329
Query: 109 EKN-LKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQ---------------- 151
++N + S +Y + +KLG LKGN F + + + P + Q+ +Q
Sbjct: 330 KRNGFTLGSFSYEDHPLKLGDLKGNEFTIVIRDIKPHHQQQQQQEQQPQDQSQSIESIVT 389
Query: 152 -VLEQIAQFGMPNYFGSQRFGKFNDNHQEGLKILQNQTKFAHQKLNAFLISSYQSYLFNA 210
E + + G NYFG QRFG F+ + E K + N+ Q+ L+S +S +
Sbjct: 390 SCFESLQKNGFINYFGMQRFGSFSISTHEFGKFILNEN---WQEFVELLLSDQESVAPGS 446
Query: 211 LLSKRL 216
+ ++++
Sbjct: 447 IEARKI 452
>ref|NP_247567.1| (NC_000909) conserved hypothetical protein [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
sp|Q58008|Y588_METJA Hypothetical protein MJ0588
pir||D64373 hypothetical protein homolog MJ0588 - Methanococcus jannaschii
gb|AAB98579.1| (U67507) conserved hypothetical protein [Methanococcus jannaschii]
[Methanocaldococcus jannaschii]
Length = 430
Score = 63.2 bits (152), Expect = 5e-09
Identities = 86/354 (24%), Positives = 154/354 (43%), Gaps = 36/354 (10%)
Query: 42 GEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALTTQFISLPKKYAPLLE 101
G + + K +TL+ ++ + +G + G+AG KDK A+TTQ + + LE
Sbjct: 91 GNYIHFTLEKRNWTTLDAIREIANRVGKQRKHFGFAGNKDKYAVTTQRVGC---FNVKLE 147
Query: 102 KNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIAQFG- 160
+ + K + + + KI+LG L GNRF +R ++ L ++ ++ L ++ +
Sbjct: 148 -DLMKVKIKGIILRDFQKTNRKIRLGDLWGNRFTIRVRE-PELKGKELEEALNKLCKLKY 205
Query: 161 MPNYFGSQRFGKFND-NHQEGLKILQNQTKFAHQKL--NAFLISSYQSYLFNALLSK--- 214
NY+G QRFG H G I++ + A +S L L+ +
Sbjct: 206 FLNYYGVQRFGTTRPITHIVGRFIIERDWEGAFHAYCGTPLPYDDKKSKLARELVDEENF 265
Query: 215 RLEISKIISAF-----SVKENLEFFK-QKNLSVDSDTLKTLKNQAHPFKILEGDVMCHYP 268
+ K AF +K +E QK + L+ + A+ + + +
Sbjct: 266 KEAYKKFPKAFFYERRMIKAYIETGSYQKAFMILPPYLRCMFINAYQSYLFNEIINRRFE 325
Query: 269 YGKFFDALELEKEGERFLKKEVAPTGLLDGKKALYAKNLSLEIEKEF--QHNL------L 320
YG F+ + EG+ + + P+G L G K +A + EIE+E + NL +
Sbjct: 326 YG--FEPM----EGDILI--DNVPSGALFGYKTRFASGIQGEIEREIYERENLSPEDFKI 377
Query: 321 SSHAKTLGSRRFFWVFVENVTSQYVKEKAQFELGFYLPKGSYASALLKEIKHEK 374
+G RR + N+ +Y E + L F L KG+YA+++L+E +K
Sbjct: 378 GEFGSFIGDRRAMIGKIYNM--KYWIEDDSYVLQFCLKKGNYATSVLREFIEKK 429
>ref|NP_595812.1| (NC_003423) hypothetical protein [Schizosaccharomyces pombe]
sp|O74343|YH2X_SCHPO Hypothetical protein C1A4.09 in chromosome II
pir||T39858 hypothetical protein SPBC1A4.09 - fission yeast
(Schizosaccharomyces pombe)
emb|CAA20114.1| (AL031174) hypothetical protein [Schizosaccharomyces pombe]
Length = 680
Score = 62.8 bits (151), Expect = 6e-09
Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 7/155 (4%)
Query: 42 GEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALTTQFISLPKKYAP-LL 100
GE+ + K +++ L +++L V L AG KD+ +T Q +++ A L
Sbjct: 238 GEYCHFHLYKENRDSMDCLGKIARLLKVPTRTLSIAGTKDRRGVTCQRVAIHHVRASRLA 297
Query: 101 EKNTSNFQEKNLKILSLNYHH--NKIKLGHLKGNRFFMRFKKM-TPLNAQKTKQVLEQIA 157
+ N+ + + L NY + + ++LG LKGN F + + + TP +K + L +
Sbjct: 298 QLNSGSLKNSTYGFLLGNYSYKNSNLRLGDLKGNEFHIVVRNVITP--KEKVVEALNSLK 355
Query: 158 QFGMPNYFGSQRFGKFN-DNHQEGLKILQNQTKFA 191
+ G NYFG QRFG + H G+++LQ+ K A
Sbjct: 356 EHGFINYFGLQRFGTSSVGTHTIGVRLLQSDWKGA 390
>ref|NP_613961.1| (NC_003551) Uncharacterized conserved protein [Methanopyrus
kandleri AV19]
gb|AAM01891.1| (AE010360) Uncharacterized conserved protein [Methanopyrus kandleri
AV19]
Length = 400
Score = 59.7 bits (143), Expect = 5e-08
Identities = 36/135 (26%), Positives = 68/135 (49%), Gaps = 6/135 (4%)
Query: 37 EFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALTTQFISLPKKY 96
+F G H + + K T++ ++ +Q L G AG+KDK A+T+Q +++
Sbjct: 45 QFGGRGPHTLFYLEKYDWDTMKAVRRIAQALRKHHRHFGIAGMKDKRAVTSQRVTVRGVP 104
Query: 97 APLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQI 156
+L + + ++LKI+ + K++ G L GNRF + + + + + ++
Sbjct: 105 PGVL----ARLRIRDLKIVPMGRARRKLRPGDLWGNRFVITVRGAKVRRLPEALRTVREL 160
Query: 157 AQFGMPNYFGSQRFG 171
G+PNY+G QRFG
Sbjct: 161 G--GVPNYYGLQRFG 173
>ref|NP_393692.1| (NC_002578) conserved hypothetical protein [Thermoplasma
acidophilum]
emb|CAC11360.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 411
Score = 57.8 bits (138), Expect = 2e-07
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 9/173 (5%)
Query: 13 NHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIA 72
N A + DF V EV S+ G++ +I+ T +++ + L +
Sbjct: 11 NRARPVIRIKENPEDFTVEEVADIPKSDNGKYTIIKAEIIDWDTNRIVEEIASALRISRK 70
Query: 73 ELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGN 132
+ YAG KDK A Q+ + AP+ + S K +I+ + ++LG L N
Sbjct: 71 RISYAGTKDKRARKIQYFCI---NAPV---DVSVLAFKGFRIIDRFRSDHYLRLGDLTAN 124
Query: 133 RFFMRFKKMTPLNAQKTKQVLEQIAQFGMPNYFGSQRFGKFNDN-HQEGLKIL 184
F +RF+ + ++ + + + G PNYFG QRFG N H G I+
Sbjct: 125 HFRIRFQGASDDYIEQRYEKMMECG--GFPNYFGQQRFGSRRRNTHDVGRLIV 175
>ref|NP_505653.1| (NM_073252) Uncharacterized protein family UPF0024 [Caenorhabditis
elegans]
sp|Q17426|YQ4B_CAEEL Hypothetical 64.6 kDa protein B0024.11 in chromosome V
pir||T18646 hypothetical protein B0024.11 - Caenorhabditis elegans
emb|CAA94883.1| (Z71178) Weak similarity with Haemophilus Influenzae protein HI0701
(Swiss Prot accession number P44039), contains
similarity to Pfam domain: PF01142 (Uncharacterized
protein family UPF0024), Score=810.7, E-value=1.8e-240,
N=1~cDNA EST yk256g10.3 comes>
Length = 577
Score = 56.6 bits (135), Expect = 5e-07
Identities = 39/137 (28%), Positives = 69/137 (49%), Gaps = 5/137 (3%)
Query: 51 KSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALTTQFISLPKKYA-PLLEKNTSNFQE 109
K T Q+ ++ L V + G+KDK A+T+Q +S+ K + +L+ N+ +
Sbjct: 158 KENKETSFACQLIAKFLNVGPNNIRTHGIKDKRAVTSQRVSVTKVHERTILDLNS---KL 214
Query: 110 KNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIAQFGMPNYFGSQR 169
+ +++ Y + +++G GNRF + + + + Q Q LE G NYFG+QR
Sbjct: 215 RGIRVFGCEYKDDPVQMGAHWGNRFSIVLRSLPDDSEQLLHQRLETFQNTGFINYFGTQR 274
Query: 170 FGKFNDNHQE-GLKILQ 185
FG + E GL I++
Sbjct: 275 FGSRSSTTAEIGLAIVK 291
>ref|NP_187133.1| (NM_111354) unknown protein [Arabidopsis thaliana]
gb|AAG51420.1|AC009465_20 (AC009465) unknown protein; 78996-83414 [Arabidopsis thaliana]
Length = 699
Score = 55.1 bits (131), Expect = 1e-06
Identities = 36/129 (27%), Positives = 63/129 (47%), Gaps = 2/129 (1%)
Query: 40 NTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALTTQFISLPKKYAPL 99
+ G+ + K T E L + ++LGV+ G++G KDK +++TQ +++ K+ A
Sbjct: 224 HVGKFLRFHLYKENKDTQEALGLIGKMLGVQPKSFGFSGTKDKRSVSTQRVTVFKQQASK 283
Query: 100 LEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIAQF 159
L N + +K+ + LG L GNRF + + + + + KQ E + +
Sbjct: 284 LA--ALNKRLFGIKVGDFCNVKEGLLLGQLMGNRFTITLRGVVADSEETIKQSAESLGKD 341
Query: 160 GMPNYFGSQ 168
G NYFG Q
Sbjct: 342 GFINYFGLQ 350
>gb|EAA11729.1| (AAAB01008960) ebiP4385 [Anopheles gambiae str. PEST]
Length = 558
Score = 54.7 bits (130), Expect = 2e-06
Identities = 39/143 (27%), Positives = 69/143 (47%), Gaps = 5/143 (3%)
Query: 51 KSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQEK 110
K L T++ Q L + L YAG KD+ A TTQ++ + + + +
Sbjct: 164 KENLDTIQATMQLGQKLFCAPSVLTYAGTKDRRAKTTQWMCIKTREPAKIVAAARHI--P 221
Query: 111 NLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIAQFGMPNYFGSQRF 170
N+ + + + + +KLG L+GNRF + +++T + LE + G NY+G QRF
Sbjct: 222 NVSVGNFTFKPDTLKLGQLQGNRFRIALRQVT-ASDDTINACLEAFREKGFINYYGLQRF 280
Query: 171 GKFN--DNHQEGLKILQNQTKFA 191
G ++ G+++L+ K A
Sbjct: 281 GNSAAVPTYKIGIEMLKGNWKGA 303
>ref|NP_111899.1| (NC_002689) Uncharacterized conserved protein [Thermoplasma
volcanium]
dbj|BAB60548.1| (AP000996) hypothetical protein [Thermoplasma volcanium]
Length = 409
Score = 53.5 bits (127), Expect = 4e-06
Identities = 50/209 (23%), Positives = 88/209 (41%), Gaps = 18/209 (8%)
Query: 27 DFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALT 86
DF V E+ E G++ +I+ R T + ++ L + + +AG KDK A+
Sbjct: 19 DFSVEEIADIEPDPNGKYTIIKARVRDWDTNRIAAEIARRLHMSRKRVTFAGTKDKRAVK 78
Query: 87 TQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNA 146
Q+ + + S K+ +++ + + LG L N F +RF + P
Sbjct: 79 LQYFCINSADVDV----ASLSGIKDFEVIESFKSSHYLTLGDLIANHFKIRFYGIDP--E 132
Query: 147 QKTKQVLEQIAQFGMPNYFGSQRFGKFNDN-HQEGLKILQNQTKFAHQKLNAFLISSYQS 205
++ + I++ G PN+FG QRFG N H+ G I++ + + A +K
Sbjct: 133 MFRERYVHIISKGGFPNFFGDQRFGSRRRNTHEIGKLIIKGEYEEAVKK----------- 181
Query: 206 YLFNALLSKRLEISKIISAFSVKENLEFF 234
Y+++ K I K LE F
Sbjct: 182 YIYDEKYDKESYRKHFIDTLDYKTALERF 210
>gb|AAG18841.1| (AE004988) Vng0243c [Halobacterium sp. NRC-1]
Length = 575
Score = 50.1 bits (118), Expect = 4e-05
Identities = 48/180 (26%), Positives = 85/180 (46%), Gaps = 20/180 (11%)
Query: 24 SARDFCVHEVPLYEF----SNTGEHAVIQVRKS--GLSTLEMLQIFSQILGVRIAELGYA 77
S DF V E+ ++ + TG++ + VR + T + + + +G+ + +A
Sbjct: 171 SPADFRVRELEAFDTQPADAPTGDYPWLVVRATLHEWDTNDFARELANTVGMSRERVRWA 230
Query: 78 GLKDKNALTTQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMR 137
G KD++A+TTQ ++ A + + +N I + ++ G L GN F +
Sbjct: 231 GTKDRHAVTTQLFAVRDLDAAQVP------EIRNADIEVVGRAGRGLEFGDLAGNAFEIV 284
Query: 138 FKKMTPLNAQKTKQVLEQIAQFG-----MPNYFGSQRFG-KFNDNHQEGLKILQNQTKFA 191
+ P ++ V +++A FG PNYFG QRFG K H+ GL IL++ + A
Sbjct: 285 VRD--PDAPERAAAVADELAAFGGGTVGTPNYFGQQRFGSKRPVTHEVGLAILRDDWEAA 342
>ref|NP_444184.1| (NC_002607) Uncharacterized conserved protein [Halobacterium sp.
NRC-1]
Length = 434
Score = 50.1 bits (118), Expect = 4e-05
Identities = 48/180 (26%), Positives = 85/180 (46%), Gaps = 20/180 (11%)
Query: 24 SARDFCVHEVPLYEF----SNTGEHAVIQVRKS--GLSTLEMLQIFSQILGVRIAELGYA 77
S DF V E+ ++ + TG++ + VR + T + + + +G+ + +A
Sbjct: 30 SPADFRVRELEAFDTQPADAPTGDYPWLVVRATLHEWDTNDFARELANTVGMSRERVRWA 89
Query: 78 GLKDKNALTTQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMR 137
G KD++A+TTQ ++ A + + +N I + ++ G L GN F +
Sbjct: 90 GTKDRHAVTTQLFAVRDLDAAQVP------EIRNADIEVVGRAGRGLEFGDLAGNAFEIV 143
Query: 138 FKKMTPLNAQKTKQVLEQIAQFG-----MPNYFGSQRFG-KFNDNHQEGLKILQNQTKFA 191
+ P ++ V +++A FG PNYFG QRFG K H+ GL IL++ + A
Sbjct: 144 VRD--PDAPERAAAVADELAAFGGGTVGTPNYFGQQRFGSKRPVTHEVGLAILRDDWEAA 201
>ref|NP_560515.1| (NC_003364) conserved hypothetical protein [Pyrobaculum aerophilum]
gb|AAL64697.1| (AE009913) conserved hypothetical protein [Pyrobaculum aerophilum]
Length = 413
Score = 47.8 bits (112), Expect = 2e-04
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 42 GEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALTTQFISLPKKYAPLLE 101
G I V K + T++++ ++ LG+ ++ GLKD A+T+Q IS+ A L
Sbjct: 58 GNWTWIHVVKRNVDTIKLVLRLARALGLSHRDVSVGGLKDTKAVTSQIISVRGPVANLP- 116
Query: 102 KNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIAQFGM 161
Q ++ L + I + GNRF + + + ++ + LE + +
Sbjct: 117 ------QLPGVQFLGMWSMDKPITPSQIYGNRFTIILRDVERISC--AEGALEALKKTAA 168
Query: 162 PNYFGSQRFG 171
PNY+G QRFG
Sbjct: 169 PNYYGYQRFG 178
>ref|XP_110124.1| (XM_110124) RIKEN cDNA 3000003F02 [Mus musculus]
Length = 355
Score = 43.9 bits (102), Expect = 0.003
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 9/103 (8%)
Query: 94 KKYAP-LLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKM-TPLN--AQKT 149
KK P L+ ++K + + ++ + ++LG LKGN F + + + LN A T
Sbjct: 4 KKVTPERLKSIKEEIEKKRMNVFNIRSVGDCLRLGQLKGNHFEIIIRHLRNQLNDSANLT 63
Query: 150 KQVLEQIAQF---GMPNYFGSQRFGKFN--DNHQEGLKILQNQ 187
+++LE I G NY+G QRFGK Q GL +L+N+
Sbjct: 64 ERILEAIENVKNKGFVNYYGPQRFGKGQKIQTDQIGLALLKNE 106
>ref|NP_376057.1| (NC_003106) 363aa long conserved hypothetical protein [Sulfolobus
tokodaii]
dbj|BAB65166.1| (AP000981) 363aa long conserved hypothetical protein [Sulfolobus
tokodaii]
Length = 363
Score = 42.7 bits (99), Expect = 0.007
Identities = 35/130 (26%), Positives = 58/130 (43%), Gaps = 13/130 (10%)
Query: 42 GEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALTTQFISLPKKYAPLLE 101
G++AV +RK G+ ++ S+IL +I Y G+KD NA+T Q + Y ++
Sbjct: 46 GKYAVYLLRKRGIDHFTVISEISKILHSKIH---YIGIKDTNAITEQIV-----YTTNVK 97
Query: 102 KNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIAQFGM 161
++ + L Y ++K + GN F + + +K L I +
Sbjct: 98 NIIEKYENDKFLLTFLGYSNSKF---NHTGNIFEIEIETDDIKEFEKRVNKLRSIKY--L 152
Query: 162 PNYFGSQRFG 171
P Y G QRFG
Sbjct: 153 PAYIGYQRFG 162
>ref|NP_341730.1| (NC_002754) Conserved hypothetical protein [Sulfolobus
solfataricus]
gb|AAK40520.1| (AE006655) Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 377
Score = 42.7 bits (99), Expect = 0.007
Identities = 80/349 (22%), Positives = 140/349 (39%), Gaps = 53/349 (15%)
Query: 42 GEHAVIQVRKSGLSTLEMLQIFSQILGVRIAELGYAGLKDKNALTTQFISLPKKYAPLLE 101
G++AV + K G+ + S++ V +++ Y G+KD NA+T+Q + Y PL E
Sbjct: 53 GKYAVFLLTKWGIDHFSAI---SEVQKVLHSKVNYIGIKDANAITSQLV-----YIPLNE 104
Query: 102 KN--TSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIAQF 159
K +Q ++ + L + + KL H GN F + L+ V+E+I Q
Sbjct: 105 KQELIEKYQSRSFILKFLGF--SSKKLNH-TGNIFEI------SLSISDFDIVIERIEQI 155
Query: 160 G----MPNYFGSQRFGKFND-NHQEGLKILQNQTKFAHQKLNAFLISSYQSYLFNALLSK 214
+P + G QRFG H G +L+ + A +LI +Y F + +
Sbjct: 156 KKNPYLPAFIGYQRFGTRRPITHLIGKYLLRRDWEKAF-----YLILTYP---FLSESKE 207
Query: 215 RLEISKIISAFSVKENLEF----FKQ-----KNLSVDSDTLKTLKNQAHPFKI----LEG 261
++I K+I KE + FKQ KN + LK+ P + +
Sbjct: 208 TIDIRKLIMEGDFKEAVRSIPSKFKQEKLLLKNYMRFNSYYLALKSSFIPISLYLDAYQS 267
Query: 262 DVMCHYPYGKFFDALELEKEGERFLKKEVAPTGLLDGKKALYAKNLSLEIEKEFQHNLLS 321
+ Y K + L + ++ + D K +Y +++ + N
Sbjct: 268 YLFNLYLSRKLDEYKNLNDKVNLLIRIPIYFNNCDDVCKEIY-------LDEGIERNFFK 320
Query: 322 SHAKTLGSRRFFWVFVENVTSQYVKEKAQFELGFYLPKGSYASALLKEI 370
+ R N+ V E+ + + F L +G YA+ LL+EI
Sbjct: 321 LQEFKISLRDLVRKAFMNIRDLKVNEETK-TISFVLERGMYATILLREI 368
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.136 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 232,436,030
Number of Sequences: 1026957
Number of extensions: 9636381
Number of successful extensions: 22440
Number of sequences better than 1.0e-02: 45
Number of HSP's better than 0.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 22287
Number of HSP's gapped (non-prelim): 96
length of query: 381
length of database: 324,149,939
effective HSP length: 123
effective length of query: 258
effective length of database: 197,834,228
effective search space: 51041230824
effective search space used: 51041230824
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 98 (42.4 bits)