BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644724|ref|NP_206894.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(155 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206894.1| (NC_000915) conserved hypothetical protein... 315 1e-85
gb|AAD29864.1| (AF093829) alpha-1,2-fucosyltransferase shor... 290 3e-78
gb|AAD29866.1| (AF093830) alpha-1,2-fucosyltransferase [Hel... 283 6e-76
gb|AAD29865.1| (AF093829) alpha-1,2-fucosyltransferase long... 281 2e-75
gb|AAD29869.1| (AF093833) alpha-1,2-fucosyltransferase [Hel... 276 7e-74
gb|AAD29868.1| (AF093832) alpha-1,2-fucosyltransferase [Hel... 273 6e-73
gb|AAD29863.1| (AF093828) alpha-1,2-fucosyltransferase [Hel... 269 8e-72
ref|NP_222807.1| (NC_000921) putative ALPHA(1,2)FUCOSYLTRAN... 265 1e-70
gb|AAD29867.1| (AF093831) alpha-1,2-fucosyltransferase [Hel... 265 2e-70
gb|AAC99764.1| (AF076779) alpha-1,2-fucosyltransferase [Hel... 264 2e-70
gb|AAG26470.1|AF285774_10 (AF285774) putative alpha-1,2-fuc... 51 5e-06
pir||T44328 hypothetical protein wblA [imported] - Vibrio c... 47 5e-05
gb|AAC60771.1| (U46859) WbcH [Yersinia enterocolitica (type... 42 0.002
gb|AAL67556.1|AF461121_7 (AF461121) putative fucosyltransfe... 40 0.008
>ref|NP_206894.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||F64531 conserved hypothetical protein HP0094 - Helicobacter pylori
(strain 26695)
gb|AAD07164.1| (AE000531) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 155
Score = 315 bits (806), Expect = 1e-85
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWSDRKMQLELFPIDLPYAS 60
MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWSDRKMQLELFPIDLPYAS
Sbjct: 1 MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWSDRKMQLELFPIDLPYAS 60
Query: 61 AKEIAIAKMQHLPKLVRDALKCMGFDRVSQEIVFEYEPKLLKPSRLTYFFGYFQDPRYFD 120
AKEIAIAKMQHLPKLVRDALKCMGFDRVSQEIVFEYEPKLLKPSRLTYFFGYFQDPRYFD
Sbjct: 61 AKEIAIAKMQHLPKLVRDALKCMGFDRVSQEIVFEYEPKLLKPSRLTYFFGYFQDPRYFD 120
Query: 121 AISPLIKQTFTLPPPPPKIIRIIIKKRKNISASFL 155
AISPLIKQTFTLPPPPPKIIRIIIKKRKNISASFL
Sbjct: 121 AISPLIKQTFTLPPPPPKIIRIIIKKRKNISASFL 155
>gb|AAD29864.1| (AF093829) alpha-1,2-fucosyltransferase short form [Helicobacter
pylori]
Length = 154
Score = 290 bits (743), Expect = 3e-78
Identities = 145/155 (93%), Positives = 151/155 (96%), Gaps = 1/155 (0%)
Query: 1 MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWSDRKMQLELFPIDLPYAS 60
MAFKVV+ICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWS+RKMQLELFPIDLPYAS
Sbjct: 1 MAFKVVRICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWSNRKMQLELFPIDLPYAS 60
Query: 61 AKEIAIAKMQHLPKLVRDALKCMGFDRVSQEIVFEYEPKLLKPSRLTYFFGYFQDPRYFD 120
AKEIAIAKMQHLPKLVRDALK +GFDRVSQEIVFEYEPKLLKPSRLTYF+GYFQDPRYFD
Sbjct: 61 AKEIAIAKMQHLPKLVRDALKYIGFDRVSQEIVFEYEPKLLKPSRLTYFYGYFQDPRYFD 120
Query: 121 AISPLIKQTFTLPPPPPKIIRIIIKKRKNISASFL 155
AISPLIKQTFTL PPPPKIIRIIIKKRKN +A+ L
Sbjct: 121 AISPLIKQTFTL-PPPPKIIRIIIKKRKNTTANLL 154
>gb|AAD29866.1| (AF093830) alpha-1,2-fucosyltransferase [Helicobacter pylori]
Length = 160
Score = 283 bits (723), Expect = 6e-76
Identities = 139/150 (92%), Positives = 142/150 (94%)
Query: 1 MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWSDRKMQLELFPIDLPYAS 60
MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWS+RKMQLELFPIDLPYAS
Sbjct: 1 MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWSNRKMQLELFPIDLPYAS 60
Query: 61 AKEIAIAKMQHLPKLVRDALKCMGFDRVSQEIVFEYEPKLLKPSRLTYFFGYFQDPRYFD 120
KEIAIAKMQHLPKLVR+ LKCMGFDRVSQEIVFEYEP+LLKPSRLTYFFGYFQDPRYFD
Sbjct: 61 EKEIAIAKMQHLPKLVREVLKCMGFDRVSQEIVFEYEPELLKPSRLTYFFGYFQDPRYFD 120
Query: 121 AISPLIKQTFTLPPPPPKIIRIIIKKRKNI 150
AISPLIKQTFTLPPPPPKII KKR I
Sbjct: 121 AISPLIKQTFTLPPPPPKIIENNKKKRGRI 150
>gb|AAD29865.1| (AF093829) alpha-1,2-fucosyltransferase long form [Helicobacter
pylori]
Length = 300
Score = 281 bits (719), Expect = 2e-75
Identities = 140/148 (94%), Positives = 145/148 (97%), Gaps = 1/148 (0%)
Query: 1 MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWSDRKMQLELFPIDLPYAS 60
MAFKVV+ICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWS+RKMQLELFPIDLPYAS
Sbjct: 1 MAFKVVRICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWSNRKMQLELFPIDLPYAS 60
Query: 61 AKEIAIAKMQHLPKLVRDALKCMGFDRVSQEIVFEYEPKLLKPSRLTYFFGYFQDPRYFD 120
AKEIAIAKMQHLPKLVRDALK +GFDRVSQEIVFEYEPKLLKPSRLTYF+GYFQDPRYFD
Sbjct: 61 AKEIAIAKMQHLPKLVRDALKYIGFDRVSQEIVFEYEPKLLKPSRLTYFYGYFQDPRYFD 120
Query: 121 AISPLIKQTFTLPPPPPKIIRIIIKKRK 148
AISPLIKQTFTL PPPPKIIRIIIKK +
Sbjct: 121 AISPLIKQTFTL-PPPPKIIRIIIKKEE 147
>gb|AAD29869.1| (AF093833) alpha-1,2-fucosyltransferase [Helicobacter pylori]
Length = 300
Score = 276 bits (705), Expect = 7e-74
Identities = 133/136 (97%), Positives = 136/136 (99%)
Query: 1 MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWSDRKMQLELFPIDLPYAS 60
MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWSDRKMQLELFPI+LPYAS
Sbjct: 1 MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWSDRKMQLELFPINLPYAS 60
Query: 61 AKEIAIAKMQHLPKLVRDALKCMGFDRVSQEIVFEYEPKLLKPSRLTYFFGYFQDPRYFD 120
AKEIAIAKMQHLPKLVRDALKCMGFDRVSQEIVFEYEP+LLKPSRLTYF+GYFQDPRYFD
Sbjct: 61 AKEIAIAKMQHLPKLVRDALKCMGFDRVSQEIVFEYEPELLKPSRLTYFYGYFQDPRYFD 120
Query: 121 AISPLIKQTFTLPPPP 136
AISPLIKQTFTLPPPP
Sbjct: 121 AISPLIKQTFTLPPPP 136
>gb|AAD29868.1| (AF093832) alpha-1,2-fucosyltransferase [Helicobacter pylori]
Length = 299
Score = 273 bits (697), Expect = 6e-73
Identities = 132/136 (97%), Positives = 135/136 (99%)
Query: 1 MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWSDRKMQLELFPIDLPYAS 60
MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDI+SFDWS+RKMQLELFPIDLPYAS
Sbjct: 1 MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDISSFDWSNRKMQLELFPIDLPYAS 60
Query: 61 AKEIAIAKMQHLPKLVRDALKCMGFDRVSQEIVFEYEPKLLKPSRLTYFFGYFQDPRYFD 120
AKEIAIAKMQHLPKLVRDALKCMGFDRVSQEIVFEYEPKLLKPSRLTYF+GYFQDPRYFD
Sbjct: 61 AKEIAIAKMQHLPKLVRDALKCMGFDRVSQEIVFEYEPKLLKPSRLTYFYGYFQDPRYFD 120
Query: 121 AISPLIKQTFTLPPPP 136
AIS LIKQTFTLPPPP
Sbjct: 121 AISSLIKQTFTLPPPP 136
>gb|AAD29863.1| (AF093828) alpha-1,2-fucosyltransferase [Helicobacter pylori]
Length = 299
Score = 269 bits (687), Expect = 8e-72
Identities = 130/136 (95%), Positives = 133/136 (97%)
Query: 1 MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWSDRKMQLELFPIDLPYAS 60
MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWS+RKMQLELFPIDLPYAS
Sbjct: 1 MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWSNRKMQLELFPIDLPYAS 60
Query: 61 AKEIAIAKMQHLPKLVRDALKCMGFDRVSQEIVFEYEPKLLKPSRLTYFFGYFQDPRYFD 120
KEIAIAKMQHLPKLVR+ LKCMGFDRVSQEIVFEYEPKLLK SRLTYF+GYFQDPRYFD
Sbjct: 61 EKEIAIAKMQHLPKLVRNVLKCMGFDRVSQEIVFEYEPKLLKTSRLTYFYGYFQDPRYFD 120
Query: 121 AISPLIKQTFTLPPPP 136
AISPLIKQTFTLPPPP
Sbjct: 121 AISPLIKQTFTLPPPP 136
>ref|NP_222807.1| (NC_000921) putative ALPHA(1,2)FUCOSYLTRANSFERASE [Helicobacter
pylori J99]
pir||H71976 probable alpha(1,2)fucosyltransferase - Helicobacter pylori
(strain J99)
gb|AAD05659.1| (AE001447) putative ALPHA(1,2)FUCOSYLTRANSFERASE [Helicobacter
pylori J99]
Length = 299
Score = 265 bits (677), Expect = 1e-70
Identities = 131/136 (96%), Positives = 133/136 (97%)
Query: 1 MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWSDRKMQLELFPIDLPYAS 60
MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFD S+RKMQLELFPIDLPYAS
Sbjct: 1 MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDGSNRKMQLELFPIDLPYAS 60
Query: 61 AKEIAIAKMQHLPKLVRDALKCMGFDRVSQEIVFEYEPKLLKPSRLTYFFGYFQDPRYFD 120
AKEIAIAKMQHLPKLVRDALK MGFDRVSQEIVFEYEPKLLKPSRLTYF+GYFQDPRYFD
Sbjct: 61 AKEIAIAKMQHLPKLVRDALKYMGFDRVSQEIVFEYEPKLLKPSRLTYFYGYFQDPRYFD 120
Query: 121 AISPLIKQTFTLPPPP 136
AIS LIKQTFTLPPPP
Sbjct: 121 AISSLIKQTFTLPPPP 136
>gb|AAD29867.1| (AF093831) alpha-1,2-fucosyltransferase [Helicobacter pylori]
Length = 299
Score = 265 bits (676), Expect = 2e-70
Identities = 129/138 (93%), Positives = 133/138 (95%)
Query: 1 MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWSDRKMQLELFPIDLPYAS 60
MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLD TSFDWS+RKMQLELFPIDLPYAS
Sbjct: 1 MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDTTSFDWSNRKMQLELFPIDLPYAS 60
Query: 61 AKEIAIAKMQHLPKLVRDALKCMGFDRVSQEIVFEYEPKLLKPSRLTYFFGYFQDPRYFD 120
KEIAIAKMQHLPKLVR+ALK +GFDRVSQEIVFEYEPKLLKPSRLTYFFGYFQDPRYFD
Sbjct: 61 EKEIAIAKMQHLPKLVREALKYIGFDRVSQEIVFEYEPKLLKPSRLTYFFGYFQDPRYFD 120
Query: 121 AISPLIKQTFTLPPPPPK 138
AISPLIK+T TLPPPP K
Sbjct: 121 AISPLIKKTLTLPPPPRK 138
>gb|AAC99764.1| (AF076779) alpha-1,2-fucosyltransferase [Helicobacter pylori]
dbj|BAB63461.1| (AB031036) alpha-1,2-fucosyltransferase [synthetic construct]
Length = 300
Score = 264 bits (675), Expect = 2e-70
Identities = 129/136 (94%), Positives = 132/136 (96%)
Query: 1 MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWSDRKMQLELFPIDLPYAS 60
MAFKVVQICGGLGNQMFQYAFAKSLQKH NTPVLLD TSFDWS+RKMQLELFPIDLPYA+
Sbjct: 1 MAFKVVQICGGLGNQMFQYAFAKSLQKHLNTPVLLDTTSFDWSNRKMQLELFPIDLPYAN 60
Query: 61 AKEIAIAKMQHLPKLVRDALKCMGFDRVSQEIVFEYEPKLLKPSRLTYFFGYFQDPRYFD 120
AKEIAIAKMQHLPKLVRDALK +GFDRVSQEIVFEYEPKLLKPSRLTYFFGYFQDPRYFD
Sbjct: 61 AKEIAIAKMQHLPKLVRDALKYIGFDRVSQEIVFEYEPKLLKPSRLTYFFGYFQDPRYFD 120
Query: 121 AISPLIKQTFTLPPPP 136
AIS LIKQTFTLPPPP
Sbjct: 121 AISSLIKQTFTLPPPP 136
>gb|AAG26470.1|AF285774_10 (AF285774) putative alpha-1,2-fucosyltransferase [Bacteroides
fragilis]
Length = 289
Score = 50.8 bits (120), Expect = 5e-06
Identities = 41/138 (29%), Positives = 67/138 (47%), Gaps = 12/138 (8%)
Query: 5 VVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWSD----RKMQLELFPIDLPYAS 60
V + GGLGNQMF YA K++ +N P ++T+ +D RK+ L F +DLP
Sbjct: 3 VSSLRGGLGNQMFIYAMVKAMALRNNVPFAFNLTTDFANDEVYKRKLLLSYFALDLPENK 62
Query: 61 AKEIAIAKMQHLPKLVRDALKC----MGFDRVSQEIVFEYEPKLLKPSRLTYFF--GYFQ 114
+ + +L R+ L C + + +E +E +L+ S++T F GY+Q
Sbjct: 63 KLTFDFSYGNYYRRLSRN-LGCHILHPSYRYICEERPPHFESRLIS-SKITNAFLEGYWQ 120
Query: 115 DPRYFDAISPLIKQTFTL 132
+YF IK+ F +
Sbjct: 121 SEKYFLDYKQEIKEDFVI 138
>pir||T44328 hypothetical protein wblA [imported] - Vibrio cholerae
dbj|BAA33632.1| (AB012957) probable beta-D-galactoside 2-alpha-L-fucosyl
transferase [Vibrio cholerae]
Length = 281
Score = 47.4 bits (111), Expect = 5e-05
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 13/132 (9%)
Query: 5 VVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWSDRKM----QLELFPIDLPYAS 60
V++I GGLGNQ+FQYA +++ P+ LD++++ + K+ +L+ F I+ A+
Sbjct: 3 VMKISGGLGNQLFQYAVGRAIAIQYGVPLKLDVSAY--KNYKLHNGYRLDQFNINADIAN 60
Query: 61 AKEIAIAK--MQHLPKLVRDA--LKCMGFDRVSQEIVFEYEPKLLKPSRLTYFFGYFQDP 116
EI K L +++R LK + Q +++ + P Y GY+Q+
Sbjct: 61 EDEIFHLKGSSNRLSRILRRLGWLKKNTYYAEKQRTIYDVSVFMQAP---RYLDGYWQNE 117
Query: 117 RYFDAISPLIKQ 128
+YF I ++ Q
Sbjct: 118 QYFSQIRAVLLQ 129
>gb|AAC60771.1| (U46859) WbcH [Yersinia enterocolitica (type 0:8)]
Length = 283
Score = 42.4 bits (98), Expect = 0.002
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 6 VQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWSDRKMQLELF----PIDLPYASA 61
V + GGLGNQ+FQ A+A L+ V L++ F + + F ++ S
Sbjct: 5 VLVQGGLGNQLFQVAWAYYLKDKLKFDVNLNVHLFYQQRQHSSVSFFSLLGELETIPISE 64
Query: 62 KEIAIAKMQHLPKLVRDALKCMGFDRVSQEIVFEY------EPKLLKPSRLTYFFGYFQD 115
+ I L K++R +L+ M + V ++++Y + LK Y +GYFQ
Sbjct: 65 ERILTFNDDLLSKIIRFSLRKMKINHVPNILIYDYDALSSLDDDCLKIPMPNYHYGYFQF 124
Query: 116 P 116
P
Sbjct: 125 P 125
>gb|AAL67556.1|AF461121_7 (AF461121) putative fucosyltransferase WbgN [Escherichia coli]
Length = 290
Score = 40.0 bits (92), Expect = 0.008
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 13/138 (9%)
Query: 1 MAFKVVQICGGLGNQMFQYA--FAKSLQKHSNTPVLLDITSFD--WSDRKMQLELFPIDL 56
M+ V ++ GGLGNQMFQYA +A+S+++ N+ + LD+ + +L+ ID
Sbjct: 1 MSIVVARLAGGLGNQMFQYAKGYAESVER--NSSLKLDLRGYKNYTLHGGFRLDKLNIDN 58
Query: 57 PYASAKEIAIAKMQHLPK-LVRDALKCMGFDRVSQEIVFEYEPKLLKPSR--LTYFFGYF 113
+ +K+ +M P +VR K S+ E K + S F G++
Sbjct: 59 TFVMSKK----EMCIFPNFIVRAINKFPKLSLCSKRFESEQYSKKINGSMKGSVEFIGFW 114
Query: 114 QDPRYFDAISPLIKQTFT 131
Q+ RYF +++ FT
Sbjct: 115 QNERYFLEHKEKLREIFT 132
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.326 0.142 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,113,358
Number of Sequences: 1026957
Number of extensions: 3947923
Number of successful extensions: 13812
Number of sequences better than 1.0e-02: 14
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 13797
Number of HSP's gapped (non-prelim): 14
length of query: 155
length of database: 324,149,939
effective HSP length: 111
effective length of query: 44
effective length of database: 210,157,712
effective search space: 9246939328
effective search space used: 9246939328
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 92 (40.0 bits)