BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645547|ref|NP_207723.1| hypothetical protein
[Helicobacter pylori 26695]
         (146 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207723.1|  (NC_000915) hypothetical protein [Helicoba...   298  7e-81
ref|NP_223584.1|  (NC_000921) putative [Helicobacter pylori ...   270  1e-72

>ref|NP_207723.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||C64636 hypothetical protein HP0931 - Helicobacter pylori (strain 26695)
 gb|AAD07979.1| (AE000602) H. pylori predicted coding region HP0931 [Helicobacter
           pylori 26695]
          Length = 146

 Score =  298 bits (763), Expect = 7e-81
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 1   MSKKHRLAFLGLIVGVLFFFSACEHRLHMGYYSEVTGDYLFNYNSTIVVAYDRSDAMTSY 60
           MSKKHRLAFLGLIVGVLFFFSACEHRLHMGYYSEVTGDYLFNYNSTIVVAYDRSDAMTSY
Sbjct: 1   MSKKHRLAFLGLIVGVLFFFSACEHRLHMGYYSEVTGDYLFNYNSTIVVAYDRSDAMTSY 60

Query: 61  YINVIVYELQKLGFYNVFTQAEFPLDKAKNVIYARIVRNISAVPFYQYNYQLIDQVNKPC 120
           YINVIVYELQKLGFYNVFTQAEFPLDKAKNVIYARIVRNISAVPFYQYNYQLIDQVNKPC
Sbjct: 61  YINVIVYELQKLGFYNVFTQAEFPLDKAKNVIYARIVRNISAVPFYQYNYQLIDQVNKPC 120

Query: 121 YFLGGQFYCSQTLRIITLSMALASKF 146
           YFLGGQFYCSQTLRIITLSMALASKF
Sbjct: 121 YFLGGQFYCSQTLRIITLSMALASKF 146



>ref|NP_223584.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71879 hypothetical protein jhp0866 - Helicobacter pylori (strain J99)
 gb|AAD06438.1| (AE001516) putative [Helicobacter pylori J99]
          Length = 219

 Score =  270 bits (691), Expect = 1e-72
 Identities = 129/132 (97%), Positives = 131/132 (98%)

Query: 1   MSKKHRLAFLGLIVGVLFFFSACEHRLHMGYYSEVTGDYLFNYNSTIVVAYDRSDAMTSY 60
           M+KKHRLAFLGLIVGVLFFFSAC+HRLHMGYYSEVTGDYLFNYNSTIVVAYDRSDAMTSY
Sbjct: 1   MNKKHRLAFLGLIVGVLFFFSACQHRLHMGYYSEVTGDYLFNYNSTIVVAYDRSDAMTSY 60

Query: 61  YINVIVYELQKLGFYNVFTQAEFPLDKAKNVIYARIVRNISAVPFYQYNYQLIDQVNKPC 120
           YINVIVYELQKLGFYNVFTQAEFPLDKAKNVIY RIVRNISAVPFYQYNYQLIDQVNKPC
Sbjct: 61  YINVIVYELQKLGFYNVFTQAEFPLDKAKNVIYVRIVRNISAVPFYQYNYQLIDQVNKPC 120

Query: 121 YFLGGQFYCSQT 132
           YFLGGQFYCSQT
Sbjct: 121 YFLGGQFYCSQT 132



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.329    0.142    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,352,801
Number of Sequences: 1026957
Number of extensions: 3311262
Number of successful extensions: 8202
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8200
Number of HSP's gapped (non-prelim): 2
length of query: 146
length of database: 324,149,939
effective HSP length: 122
effective length of query: 24
effective length of database: 198,861,185
effective search space: 4772668440
effective search space used: 4772668440
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 89 (38.9 bits)