BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645548|ref|NP_207724.1| hypothetical protein
[Helicobacter pylori 26695]
(100 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207724.1| (NC_000915) hypothetical protein [Helicoba... 211 1e-54
ref|NP_223584.1| (NC_000921) putative [Helicobacter pylori ... 186 3e-47
>ref|NP_207724.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64636 hypothetical protein HP0932 - Helicobacter pylori (strain 26695)
gb|AAD07980.1| (AE000602) H. pylori predicted coding region HP0932 [Helicobacter
pylori 26695]
Length = 100
Score = 211 bits (537), Expect = 1e-54
Identities = 100/100 (100%), Positives = 100/100 (100%)
Query: 1 MLFSWGAVLLLSNPTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTC 60
MLFSWGAVLLLSNPTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTC
Sbjct: 1 MLFSWGAVLLLSNPTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTC 60
Query: 61 GYQMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQPCYRQ 100
GYQMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQPCYRQ
Sbjct: 61 GYQMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQPCYRQ 100
>ref|NP_223584.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71879 hypothetical protein jhp0866 - Helicobacter pylori (strain J99)
gb|AAD06438.1| (AE001516) putative [Helicobacter pylori J99]
Length = 219
Score = 186 bits (473), Expect = 3e-47
Identities = 89/98 (90%), Positives = 89/98 (90%)
Query: 3 FSWGAVLLLSNPTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGY 62
F G PTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGY
Sbjct: 122 FLGGQFYCSQTPTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGY 181
Query: 63 QMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQPCYRQ 100
QMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQPCYRQ
Sbjct: 182 QMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQPCYRQ 219
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.327 0.143 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,122,368
Number of Sequences: 1026957
Number of extensions: 2184060
Number of successful extensions: 5622
Number of sequences better than 1.0e-02: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5620
Number of HSP's gapped (non-prelim): 2
length of query: 100
length of database: 324,149,939
effective HSP length: 76
effective length of query: 24
effective length of database: 246,101,207
effective search space: 5906428968
effective search space used: 5906428968
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 90 (39.3 bits)