BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645549|ref|NP_207725.1| hypothetical protein
[Helicobacter pylori 26695]
(200 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207725.1| (NC_000915) hypothetical protein [Helicoba... 421 e-117
ref|NP_223585.1| (NC_000921) putative [Helicobacter pylori ... 408 e-113
ref|NP_281370.1| (NC_002163) hypothetical protein Cj0159c [... 137 7e-32
ref|NP_350207.1| (NC_003030) 6-pyruvoyl-tetrahydropterin sy... 48 7e-05
ref|NP_220568.1| (NC_000963) unknown [Rickettsia prowazekii... 47 1e-04
ref|NP_213186.1| (NC_000918) hypothetical protein [Aquifex ... 47 1e-04
ref|NP_615909.1| (NC_003552) 6-pyruvoyltetrahydropterin syn... 47 1e-04
ref|NP_359862.1| (NC_003103) unknown [Rickettsia conorii] >... 47 1e-04
ref|NP_655244.1| (NC_003995) PTPS, 6-pyruvoyl tetrahydropte... 44 8e-04
ref|NP_376431.1| (NC_003106) 139aa long conserved hypotheti... 42 0.003
ref|NP_437602.1| (NC_003078) putative 6-pyruvoyl tetrahydro... 41 0.007
>ref|NP_207725.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
sp|O25587|Y933_HELPY Hypothetical protein HP0933
pir||E64636 hypothetical protein HP0933 - Helicobacter pylori (strain 26695)
gb|AAD07981.1| (AE000602) H. pylori predicted coding region HP0933 [Helicobacter
pylori 26695]
Length = 200
Score = 421 bits (1081), Expect = e-117
Identities = 200/200 (100%), Positives = 200/200 (100%)
Query: 1 MVIRRLYQFCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQ 60
MVIRRLYQFCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQ
Sbjct: 1 MVIRRLYQFCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQ 60
Query: 61 VFIESFDHAHHFWDKESLEFQRFIENHCVRYVKCSFNLSAESYALMFLYYLTKILQKSVF 120
VFIESFDHAHHFWDKESLEFQRFIENHCVRYVKCSFNLSAESYALMFLYYLTKILQKSVF
Sbjct: 61 VFIESFDHAHHFWDKESLEFQRFIENHCVRYVKCSFNLSAESYALMFLYYLTKILQKSVF 120
Query: 121 SNDEGELKVSSVRVHETKNGYAESFLKDLENPHFKSLVHDHCVSFSQGIQNLWHDKDFFN 180
SNDEGELKVSSVRVHETKNGYAESFLKDLENPHFKSLVHDHCVSFSQGIQNLWHDKDFFN
Sbjct: 121 SNDEGELKVSSVRVHETKNGYAESFLKDLENPHFKSLVHDHCVSFSQGIQNLWHDKDFFN 180
Query: 181 KIISDEKQCFFHAKPLHQIP 200
KIISDEKQCFFHAKPLHQIP
Sbjct: 181 KIISDEKQCFFHAKPLHQIP 200
>ref|NP_223585.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZKR8|Y933_HELPJ Hypothetical protein JHP0867
pir||B71879 hypothetical protein jhp0867 - Helicobacter pylori (strain J99)
gb|AAD06439.1| (AE001516) putative [Helicobacter pylori J99]
Length = 200
Score = 408 bits (1048), Expect = e-113
Identities = 193/200 (96%), Positives = 198/200 (98%)
Query: 1 MVIRRLYQFCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQ 60
MVIRRLY+FCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQ
Sbjct: 1 MVIRRLYKFCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQ 60
Query: 61 VFIESFDHAHHFWDKESLEFQRFIENHCVRYVKCSFNLSAESYALMFLYYLTKILQKSVF 120
FI+SFDHAHHFWDKES EFQRFIENHCVRYVKCSFNLSAESYALMFLYYLTKILQKSVF
Sbjct: 61 TFIDSFDHAHHFWDKESPEFQRFIENHCVRYVKCSFNLSAESYALMFLYYLTKILQKSVF 120
Query: 121 SNDEGELKVSSVRVHETKNGYAESFLKDLENPHFKSLVHDHCVSFSQGIQNLWHDKDFFN 180
SN+EGELKVSSVRVHETKNGYAESFLKDLENPHFKSLVHDHCVSFSQGIQ+LWHDKDFF+
Sbjct: 121 SNNEGELKVSSVRVHETKNGYAESFLKDLENPHFKSLVHDHCVSFSQGIQSLWHDKDFFH 180
Query: 181 KIISDEKQCFFHAKPLHQIP 200
KIISDEKQCFFHAKPLHQIP
Sbjct: 181 KIISDEKQCFFHAKPLHQIP 200
>ref|NP_281370.1| (NC_002163) hypothetical protein Cj0159c [Campylobacter jejuni]
pir||G81433 hypothetical protein Cj0159c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72643.1| (AL139074) hypothetical protein Cj0159c [Campylobacter jejuni]
Length = 193
Score = 137 bits (345), Expect = 7e-32
Identities = 66/186 (35%), Positives = 116/186 (61%), Gaps = 1/186 (0%)
Query: 1 MVIRRLYQFCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQ 60
M+IR+L++F +H+VR CSS +C +IHGH+Y+VEV +E+ LDNA M DFGL++ ++
Sbjct: 1 MIIRKLFEFENAHIVRFCSSKRCKSSIHGHSYKVEVLLESKYLDNAGMVYDFGLLKTYIR 60
Query: 61 VFIESFDHAHHFWDKESLEFQRFIENHCVRYVKCSFNLSAESYALMFLYYLTKILQKSVF 120
I+SFDHA + + ++ ++ + R++ N+SAE++ +F + +L+++
Sbjct: 61 QIIDSFDHAITLFKYDDAKYLEEMKKYSSRWICLPVNVSAENFCRVFFILIDALLKQTKM 120
Query: 121 SNDEGELKVSSVRVHETKNGYAESFLKDLENPHFKSLVHDHCVSFSQGIQNLWHDKDFFN 180
N E + + S+ VHET+ GYA+ F +D + + + FS GI+ W+D DF+N
Sbjct: 121 VNGEQGVTLQSIIVHETRTGYAQGFREDAYS-ELMPKISLQDIEFSNGIKAEWNDIDFYN 179
Query: 181 KIISDE 186
K+ ++E
Sbjct: 180 KLKNEE 185
>ref|NP_350207.1| (NC_003030) 6-pyruvoyl-tetrahydropterin synthase [Clostridium
acetobutylicum]
gb|AAK81547.1|AE007858_8 (AE007858) 6-pyruvoyl-tetrahydropterin synthase [Clostridium
acetobutylicum]
Length = 136
Score = 47.8 bits (112), Expect = 7e-05
Identities = 40/151 (26%), Positives = 80/151 (52%), Gaps = 20/151 (13%)
Query: 2 VIRRLYQFCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQV 61
+++ + F ++H + N + KCA NIHGH + VE+ I++ L + +M DF ++++ ++
Sbjct: 3 ILKIEHSFDSAHFLNNYNG-KCA-NIHGHRWRVEIEIQSETLID-DMIEDFTILKKRIKE 59
Query: 62 FIESFDHAHHFWDKESLE---FQRFIENHCVRYVKCSFNLSAESYALMFLYYLTKILQKS 118
++ +DHA +K SL F IE+ + ++ F +AE+++ F + K+
Sbjct: 60 VLDFYDHA-LIIEKNSLRKLTFDCLIEDG-FKIIELDFRPTAENFSKFFFDEIRKL---- 113
Query: 119 VFSNDEGELKVSSVRVHETKNGYAESFLKDL 149
V + V+ET N A S++K++
Sbjct: 114 -------NYDVRKITVYETPNNSA-SYVKEV 136
>ref|NP_220568.1| (NC_000963) unknown [Rickettsia prowazekii]
sp|Q9ZDY5|Y178_RICPR Hypothetical protein RP178
pir||F71728 hypothetical protein RP178 - Rickettsia prowazekii
emb|CAA14645.1| (AJ235270) unknown [Rickettsia prowazekii]
Length = 138
Score = 47.4 bits (111), Expect = 1e-04
Identities = 38/126 (30%), Positives = 70/126 (55%), Gaps = 14/126 (11%)
Query: 22 KCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQVFIE-SFDHAHHFWDKESLEF 80
KC Q +HGH+Y +E+ I N+ D M +DFGL++ + +I+ +FDH + ++ E
Sbjct: 22 KC-QFLHGHHYVLEITIAANKTDTLGMVIDFGLIKNLAKKWIDANFDH-NLILHQDDKEM 79
Query: 81 QRFIENHC---VRYVKCSFNLSAESYALMFLYYLTKILQKSVFSNDEGELKVSSVRVHET 137
+ IEN+ + Y++ N +AE+ A + +I K S + V+S++++ET
Sbjct: 80 GQQIENYTRQKIYYMR--NNPTAENIA---THLKNEIFPKLFVSQN---FFVTSLKLYET 131
Query: 138 KNGYAE 143
+N + E
Sbjct: 132 QNCFVE 137
>ref|NP_213186.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
sp|O66626|Y269_AQUAE Hypothetical protein AQ_269
pir||F70324 conserved hypothetical protein aq_269 - Aquifex aeolicus
gb|AAC06591.1| (AE000681) hypothetical protein [Aquifex aeolicus]
Length = 162
Score = 47.4 bits (111), Expect = 1e-04
Identities = 36/125 (28%), Positives = 63/125 (49%), Gaps = 7/125 (5%)
Query: 22 KCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQVFIESFDHAHHFWDKESL--E 79
KC N+HGH+Y +EV + ++ L +M +DF ++ ++ IE DH+ + + E
Sbjct: 38 KCV-NLHGHSYVLEVTVGSDTLSEQDMVMDFYHVKNALKGLIEEIDHSFIIDVNDPMYPE 96
Query: 80 FQRFIENH-CVRYVKCSFNLSAESYALMFLYYLTKILQKSVFSNDEGELKVSSVRVHETK 138
+ E + ++ F +AE+ A F +L K L+++ GE+KV V + ET
Sbjct: 97 LKDVAEKYGAMKIFPVEFCPTAEALAKFFYDFLKKRLEEAGLL---GEVKVVKVVLWETA 153
Query: 139 NGYAE 143
AE
Sbjct: 154 TSKAE 158
>ref|NP_615909.1| (NC_003552) 6-pyruvoyltetrahydropterin synthase [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM04389.1| (AE010760) 6-pyruvoyltetrahydropterin synthase [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 123
Score = 47.4 bits (111), Expect = 1e-04
Identities = 36/134 (26%), Positives = 71/134 (52%), Gaps = 24/134 (17%)
Query: 9 FCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQVFIESFDH 68
F A+H ++ + KC +N+HGHN+++EV + +L++A + +DFG ++Q + ++ D
Sbjct: 10 FAAAHQLKMVAK-KC-ENLHGHNWKIEVCVAGEKLNDAGIMMDFGELKQNVSEITKTLD- 66
Query: 69 AHHFWDKESLEFQRFIENHCVRYVKCSFNLSAESYALMFLYYLTKILQKSVFSNDEGELK 128
H+F + E F +N+ S+E+ A+ L +L+ + E++
Sbjct: 67 -HNFLN----ELDYFDDNN---------PPSSENIAVYIANSLKAMLK-------DPEIR 105
Query: 129 VSSVRVHETKNGYA 142
V+SV E++N A
Sbjct: 106 VASVTAWESENACA 119
>ref|NP_359862.1| (NC_003103) unknown [Rickettsia conorii]
gb|AAL02763.1| (AE008589) unknown [Rickettsia conorii]
Length = 172
Score = 47.0 bits (110), Expect = 1e-04
Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 13/142 (9%)
Query: 5 RLYQFCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQVFI- 63
R +F A H + + KC Q +HGH Y +E+ I N+ D M +DFGL++ + +I
Sbjct: 40 RRIEFDAGHRIIEHQN-KC-QFLHGHRYVLEIAIAANKTDKLGMVIDFGLIKDLAKKWID 97
Query: 64 ESFDHA--HHFWDKESLEFQRFIENHCVRYVKCSFNLSAESYALMFLYYLTKILQKSVFS 121
E+FDH+ H DKE + + Y++ N +AE+ A + +I K S
Sbjct: 98 ENFDHSLILHQDDKEMGQQIENCTGQKIYYMQ--NNPTAENIA---THLKNEIFPKLFVS 152
Query: 122 NDEGELKVSSVRVHETKNGYAE 143
+ V+S++++ET N + E
Sbjct: 153 QN---FFVTSLKLYETPNCFVE 171
>ref|NP_655244.1| (NC_003995) PTPS, 6-pyruvoyl tetrahydropterin synthase [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 163
Score = 44.3 bits (103), Expect = 8e-04
Identities = 34/143 (23%), Positives = 69/143 (47%), Gaps = 20/143 (13%)
Query: 1 MVIRRLYQFCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQ 60
+++ + + F A+H + +C KC +N+HGH Y+V VF + ++ +A+DFG +++
Sbjct: 32 VMVSKEFTFDAAHHL-HCYEGKC-KNLHGHTYKV-VFGISGYVNEIGLAIDFGDIKE--- 85
Query: 61 VFIESFDHAHHFWDKESLEFQRFIENHCVRYVKCSFNLSAESYALMFLYYLTKILQKSVF 120
W E + ++++ + + N +AE+ + + + L K
Sbjct: 86 -----------IWKN---EIEIYLDHRYLNETLPAMNTTAENMVVWIYEKMAEALTKDNR 131
Query: 121 SNDEGELKVSSVRVHETKNGYAE 143
+N+ +V VR+ ET YAE
Sbjct: 132 ANEYKGARVEFVRLFETPTSYAE 154
>ref|NP_376431.1| (NC_003106) 139aa long conserved hypothetical protein [Sulfolobus
tokodaii]
dbj|BAB65540.1| (AP000982) 139aa long conserved hypothetical protein [Sulfolobus
tokodaii]
Length = 139
Score = 42.4 bits (98), Expect = 0.003
Identities = 29/121 (23%), Positives = 58/121 (46%), Gaps = 14/121 (11%)
Query: 25 QNIHGHNYEVEVFIETNRLD-NANMALDFGLMQQEMQVFIESFDHAHHFWDKESLEFQRF 83
Q IHGH Y++ + IE N +D N +DF ++++ + ++ +DH ++ +
Sbjct: 25 QQIHGHTYKLSIEIEGNSIDENTGFVIDFEILKKIINDIVKDWDHKLIIPSEDLNQI--- 81
Query: 84 IENHCVRYVKCSFNLSAE--SYALMFLYYLTKILQKSVFSNDEGELKVSSVRVHETKNGY 141
Y K F L + Y Y+ + KS++ + + K+ +V+++E +N Y
Sbjct: 82 -------YFKGPFKLDIKVIPYKYPTAEYIGLEIAKSIYEKLQKKYKI-TVKIYEGENNY 133
Query: 142 A 142
A
Sbjct: 134 A 134
>ref|NP_437602.1| (NC_003078) putative 6-pyruvoyl tetrahydropterin synthase protein
[Sinorhizobium meliloti]
emb|CAA12531.1| (AJ225561) ExsC protein [Sinorhizobium meliloti]
emb|CAC49462.1| (AL603645) putative 6-pyruvoyl tetrahydropterin synthase protein
[Sinorhizobium meliloti]
Length = 119
Score = 41.2 bits (95), Expect = 0.007
Identities = 21/68 (30%), Positives = 32/68 (46%)
Query: 3 IRRLYQFCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQVF 62
I + + F ASH +++ + +HGHNY VEV + L+ D+ + Q
Sbjct: 5 ITKEFHFSASHQLKSLPAEHQCARLHGHNYIVEVELSGETLNEHGFVRDYHELAPLKQYI 64
Query: 63 IESFDHAH 70
E FDH H
Sbjct: 65 DECFDHRH 72
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.325 0.137 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,962,851
Number of Sequences: 1026957
Number of extensions: 4502969
Number of successful extensions: 13439
Number of sequences better than 1.0e-02: 11
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 13431
Number of HSP's gapped (non-prelim): 11
length of query: 200
length of database: 324,149,939
effective HSP length: 115
effective length of query: 85
effective length of database: 206,049,884
effective search space: 17514240140
effective search space used: 17514240140
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 94 (40.8 bits)