BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645550|ref|NP_207726.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(251 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207726.1| (NC_000915) conserved hypothetical protein... 509 e-143
ref|NP_223586.1| (NC_000921) putative [Helicobacter pylori ... 479 e-135
ref|NP_281371.1| (NC_002163) hypothetical protein Cj0160c [... 192 2e-48
ref|NP_395804.1| (NC_002608) Vng6305c [Halobacterium sp. NR... 94 1e-18
ref|NP_558317.1| (NC_003364) coenzyme PQQ synthesis protein... 75 9e-13
ref|NP_377452.1| (NC_003106) 212aa long conserved hypotheti... 67 1e-10
ref|NP_360570.1| (NC_003103) unknown [Rickettsia conorii] >... 65 7e-10
ref|NP_660741.1| (NC_004061) hypothetical 25.0 kD protein i... 64 2e-09
ref|NP_220975.1| (NC_000963) unknown [Rickettsia prowazekii... 59 4e-08
ref|NP_342144.1| (NC_002754) Conserved hypothetical protein... 56 4e-07
ref|NP_283507.1| (NC_003116) hypothetical protein NMA0707 [... 54 2e-06
ref|NP_439345.1| (NC_000907) conserved hypothetical protein... 53 3e-06
ref|NP_273574.1| (NC_003112) conserved hypothetical protein... 53 3e-06
ref|NP_350208.1| (NC_003030) Fe-S oxidoreductase of MoaA fa... 52 5e-06
ref|NP_441032.1| (NC_000911) hypothetical protein [Synechoc... 52 5e-06
ref|NP_245121.1| (NC_002663) unknown [Pasteurella multocida... 52 5e-06
ref|NP_619063.1| (NC_003552) conserved hypothetical protein... 51 1e-05
ref|NP_276355.1| (NC_000916) coenzyme PQQ synthesis protein... 51 1e-05
ref|NP_249666.1| (NC_002516) probable radical activating en... 51 1e-05
emb|CAB50782.1| (X74218) hypothetical protein [Pseudomonas ... 49 4e-05
ref|NP_406836.1| (NC_003143) conserved hypothetical protein... 49 7e-05
ref|NP_632779.1| (NC_003901) conserved protein [Methanosarc... 48 9e-05
emb|CAD31244.1| (AL672115) HYPOTHETICAL CONSERVED PROTEIN [... 47 3e-04
ref|NP_614101.1| (NC_003551) Organic-radical-activating enz... 46 3e-04
ref|NP_243108.1| (NC_002570) BH2242~unknown conserved prote... 45 6e-04
ref|NP_389257.1| (NC_000964) similar to coenzyme PQQ synthe... 45 6e-04
ref|NP_248655.1| (NC_000909) coenzyme PQQ synthesis protein... 45 0.001
ref|NP_457340.1| (NC_003198) conserved hypothetical protein... 44 0.001
ref|NP_106394.1| (NC_002678) hypothetical protein [Mesorhiz... 44 0.001
ref|NP_311660.1| (NC_002695) hypothetical protein [Escheric... 44 0.002
ref|NP_638362.1| (NC_003902) radical activating enzyme [Xan... 44 0.002
ref|NP_289328.1| (NC_002655) orf, hypothetical protein [Esc... 43 0.003
ref|NP_110815.1| (NC_002689) Predicted organic radical acti... 43 0.004
ref|NP_357261.1| (NC_003063) AGR_L_2955p [Agrobacterium tum... 42 0.005
ref|NP_394815.1| (NC_002578) ATP binding cassette transport... 42 0.006
ref|NP_299180.1| (NC_002488) conserved hypothetical protein... 42 0.006
ref|NP_539011.1| (NC_003317) EXSD PROTEIN [Brucella meliten... 42 0.008
ref|NP_437601.1| (NC_003078) hypothetical conserved protein... 42 0.008
ref|NP_069277.1| (NC_000917) conserved hypothetical protein... 42 0.008
>ref|NP_207726.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||F64636 conserved hypothetical protein HP0934 - Helicobacter pylori
(strain 26695)
gb|AAD07976.1| (AE000602) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 251
Score = 509 bits (1310), Expect = e-143
Identities = 251/251 (100%), Positives = 251/251 (100%)
Query: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHP 60
MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHP
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHP 60
Query: 61 KFKTSWDYYNEPKPLIERLEDLAPNYKDFDFILTGGEPSLYFNNPILISVLEHFYRQKIP 120
KFKTSWDYYNEPKPLIERLEDLAPNYKDFDFILTGGEPSLYFNNPILISVLEHFYRQKIP
Sbjct: 61 KFKTSWDYYNEPKPLIERLEDLAPNYKDFDFILTGGEPSLYFNNPILISVLEHFYRQKIP 120
Query: 121 LCVESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRIHLKALQNILNNAKSAHFKFVL 180
LCVESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRIHLKALQNILNNAKSAHFKFVL
Sbjct: 121 LCVESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRIHLKALQNILNNAKSAHFKFVL 180
Query: 181 ESQNAAQSIIEIQSLLKQLSLKNNEIFLMPLGTNNNELDKNLKTLAPLAIKHGFRLSDRL 240
ESQNAAQSIIEIQSLLKQLSLKNNEIFLMPLGTNNNELDKNLKTLAPLAIKHGFRLSDRL
Sbjct: 181 ESQNAAQSIIEIQSLLKQLSLKNNEIFLMPLGTNNNELDKNLKTLAPLAIKHGFRLSDRL 240
Query: 241 HIRLWDNQKGF 251
HIRLWDNQKGF
Sbjct: 241 HIRLWDNQKGF 251
>ref|NP_223586.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71879 hypothetical protein jhp0868 - Helicobacter pylori (strain J99)
gb|AAD06440.1| (AE001516) putative [Helicobacter pylori J99]
Length = 251
Score = 479 bits (1234), Expect = e-135
Identities = 236/251 (94%), Positives = 243/251 (96%)
Query: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHP 60
MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTL NDEILTGCDSLYAVHP
Sbjct: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLFNDEILTGCDSLYAVHP 60
Query: 61 KFKTSWDYYNEPKPLIERLEDLAPNYKDFDFILTGGEPSLYFNNPILISVLEHFYRQKIP 120
KFKTSWDYYNEPKPLIERL +LAPNYKDFDFILTGGEPSLYFNNPIL+SVLEHFY +KIP
Sbjct: 61 KFKTSWDYYNEPKPLIERLVNLAPNYKDFDFILTGGEPSLYFNNPILLSVLEHFYHKKIP 120
Query: 121 LCVESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRIHLKALQNILNNAKSAHFKFVL 180
L VESNGSIFFEFSPILKELHFTLSVKLSFSLE+ESKRI+LKALQNILNNAKS HFKFVL
Sbjct: 121 LFVESNGSIFFEFSPILKELHFTLSVKLSFSLEQESKRINLKALQNILNNAKSVHFKFVL 180
Query: 181 ESQNAAQSIIEIQSLLKQLSLKNNEIFLMPLGTNNNELDKNLKTLAPLAIKHGFRLSDRL 240
ESQNAA SI EIQSLLKQLSLKNNEIFLMPLGT NNELDKNLKTLAPLAI+HGFRLSDRL
Sbjct: 181 ESQNAAHSIAEIQSLLKQLSLKNNEIFLMPLGTTNNELDKNLKTLAPLAIEHGFRLSDRL 240
Query: 241 HIRLWDNQKGF 251
HIRLWDN+KGF
Sbjct: 241 HIRLWDNKKGF 251
>ref|NP_281371.1| (NC_002163) hypothetical protein Cj0160c [Campylobacter jejuni]
pir||H81433 hypothetical protein Cj0160c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72644.1| (AL139074) hypothetical protein Cj0160c [Campylobacter jejuni]
Length = 247
Score = 192 bits (489), Expect = 2e-48
Identities = 108/253 (42%), Positives = 156/253 (60%), Gaps = 12/253 (4%)
Query: 3 LPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHPK- 61
+ +VESF S+QGEGK GK ++F+R GCN +C GFN K ND+ L GCD++ AV K
Sbjct: 1 MQLVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKNDKTLIGCDTIRAVFTKD 60
Query: 62 FKTSWDYYNEPKPLIERLEDLAPNYKDFD--FILTGGEPSLYFNNPILISVLEHFYRQKI 119
FK S++ N L++R+ L KDFD ++TGGEP +++ NP I ++ + K
Sbjct: 61 FKESYETLN-ANELLKRVIKLK---KDFDPIVVITGGEPLIHYENPEFIEFIQMLLKNKF 116
Query: 120 PLCVESNGSIFFEFS--PILKELHFTLSVKLSFSLEEESKRIHLKALQNILNNAKSAHFK 177
+ ESNGSI +F P KE F LSVKL S ++ KR++ KAL+ N AK + +K
Sbjct: 117 EIHFESNGSIEIDFDRYPFYKECIFALSVKLQNSGIKKDKRLNFKALKAFKNYAKDSFYK 176
Query: 178 FVLESQNAAQSIIEIQSLLKQLSLKNNEIFLMPLGTNNNELDKNLKTLAPLAIKHGFRLS 237
FVL++ S +EI +LK+ N+IF MP+G N L KN + +A IK+G+ S
Sbjct: 177 FVLDANTLDNSFLEINEILKEAP---NQIFCMPMGENEQNLKKNAQKIAEFCIKNGYNYS 233
Query: 238 DRLHIRLWDNQKG 250
DR+HIRLW++++G
Sbjct: 234 DRIHIRLWNDKEG 246
>ref|NP_395804.1| (NC_002608) Vng6305c [Halobacterium sp. NRC-1]
gb|AAG20939.1| (AE005160) Vng6305c [Halobacterium sp. NRC-1]
Length = 257
Score = 94.0 bits (232), Expect = 1e-18
Identities = 77/266 (28%), Positives = 124/266 (45%), Gaps = 53/266 (19%)
Query: 3 LPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHPKF 62
LP+ E F+SLQGEGK G PS+F+R GCNL C CDS +
Sbjct: 20 LPINELFYSLQGEGKLAGTPSVFVRTSGCNLRC--------------WFCDS-------Y 58
Query: 63 KTSWDYYNEPKPLIERLEDLAPNYKDFD----FILTGGEPSLYFNNPILISVLEHFYRQK 118
TSW EP ++D+ + ++ +LTGGEP L+ + +L L+
Sbjct: 59 HTSW----EPTHATMSVDDIIAEVQSYEHADHVVLTGGEPLLHDDAVVL---LDRLAALG 111
Query: 119 IPLCVESNGSIFFEFSPILKELHFTLSVKL-----------SFSLEEESKRIHLKALQNI 167
VE+NG+I + L + L+ ++ +++RI + L
Sbjct: 112 YHTTVETNGTIHRDAPIDLASVSPKLASSTPTAETDPKGDGEWAARHDARRIDVATL-GA 170
Query: 168 LNNAKSAHFKFVLESQNAAQSIIEIQSLLKQL------SLKNNEIFLMPLGTNNNELDKN 221
L + KFV+ + + EI+SLL ++ + + ++ LMP GT + ELD
Sbjct: 171 LADDYDTQLKFVVTDPS---DMPEIESLLAEIRTATDTRIGDEDVVLMPEGTTHAELDAR 227
Query: 222 LKTLAPLAIKHGFRLSDRLHIRLWDN 247
+A LA++HG+R + RLH+ LW++
Sbjct: 228 RNEVATLAMEHGYRYTPRLHVALWND 253
>ref|NP_558317.1| (NC_003364) coenzyme PQQ synthesis protein, conjectural
[Pyrobaculum aerophilum]
gb|AAL62499.1| (AE009746) coenzyme PQQ synthesis protein, conjectural [Pyrobaculum
aerophilum]
Length = 222
Score = 74.7 bits (182), Expect = 9e-13
Identities = 63/254 (24%), Positives = 113/254 (43%), Gaps = 43/254 (16%)
Query: 2 KLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHPK 61
++ V+E F SLQGEG +G+P++F+RL GC + C CD+ Y
Sbjct: 6 RVRVLEIFASLQGEGINLGRPAVFVRLAGCPIRC--------------IYCDTKY----- 46
Query: 62 FKTSWDYYNEPKPLIERLEDLAPNYKDFDFIL-TGGEPSLYFNNPILISVLEHFYRQKIP 120
SWD+ + +E + A ++ TGGEP ++ + +++
Sbjct: 47 ---SWDFNAGVEMGVEEIVAKALALSVVGHVVVTGGEPLIWQRRGL----------EELA 93
Query: 121 LCVESNGSIFFEFS---PILKELHFTLSVKLSFSLEEESKRIHLKA-LQNILNNAKSAHF 176
+ + GS+ E S P EL + + + + +KA ++ A F
Sbjct: 94 CALRALGSVEVETSGAYPPTPELDRCVDF---YDVSPKLSNAGVKAPFSPFYASSPKAWF 150
Query: 177 KFVLESQNAAQSIIEIQSLLKQLSLKNNEIFLMPLGTNNNELDKNLKTLAPLAIKHGFRL 236
KFV+ + A + E++ + + +FLMP+ + E + L+ + A++ GFR+
Sbjct: 151 KFVVSN---ADDVEEVERFVVAYGIPRGRVFLMPMAESPEEHGEALRRIWDAAVRGGFRV 207
Query: 237 SDRLHIRLWDNQKG 250
+ RLHI W N +G
Sbjct: 208 TPRLHIMAWGNARG 221
>ref|NP_377452.1| (NC_003106) 212aa long conserved hypothetical protein [Sulfolobus
tokodaii]
dbj|BAB66561.1| (AP000986) 212aa long conserved hypothetical protein [Sulfolobus
tokodaii]
Length = 212
Score = 67.4 bits (163), Expect = 1e-10
Identities = 74/247 (29%), Positives = 116/247 (46%), Gaps = 48/247 (19%)
Query: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHP 60
+K + E F S+QGEG+ IG PS F+RL GC+L C CD+ YA
Sbjct: 2 VKYWISEIFTSIQGEGEVIGTPSNFIRLAGCHLRC--------------IWCDTKYA--- 44
Query: 61 KFKTSWDYYNEPKPLIERLEDLAPNYKDFDFILTGGEPSLYFNNPIL--ISVLEHFYRQK 118
W Y+ + IE++ D F I TGGEP L P++ + L H
Sbjct: 45 -----WHKYDGEEMSIEQILDKIDKRIKFTTI-TGGEPLLQDILPLVEALKSLNH----- 93
Query: 119 IPLCVESNGSIFFEFSPILKEL--HFTLSVKLSFSLEEESKRIHLKALQNILNNAKSAHF 176
+ VE++G+I + S L+EL F++S KLS S K N ++ +F
Sbjct: 94 -KVLVETSGTI--KPSKKLRELVDIFSVSPKLSNS--------GYKFKYNFKDDNWVTYF 142
Query: 177 KFVLESQNAAQSIIEIQSLLKQLSLKNNEIFLMPLGTNNNELDKNLKTLAPLAIKHG--F 234
KFV+ N + I EI +++ +++ +++ L P G N + L+ L + +K G F
Sbjct: 143 KFVI--VNPLEDIQEIIRFIRENNIEPSKVILQPDGRKEN-YTEGLRELIDIILKLGIPF 199
Query: 235 RLSDRLH 241
R+ + H
Sbjct: 200 RVLPQFH 206
>ref|NP_360570.1| (NC_003103) unknown [Rickettsia conorii]
gb|AAL03471.1| (AE008647) unknown [Rickettsia conorii]
Length = 225
Score = 65.1 bits (157), Expect = 7e-10
Identities = 67/247 (27%), Positives = 119/247 (48%), Gaps = 51/247 (20%)
Query: 2 KLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHPK 61
+L V F ++QGEG +G P++F+RLGGCNL+C C T D L D
Sbjct: 17 QLEVQSIFKTIQGEGIFVGCPAIFIRLGGCNLACN--FCDTEFEDFDLVDIDK------- 67
Query: 62 FKTSWDYYNEPKPLIERLEDLAPNYKDFD----FILTGGEPSLYFNNPILISVLEHFYRQ 117
++ ++E LA N K+ ++TGGEP PI + + + +
Sbjct: 68 -------------ILNKVESLALNSKNEKSINLVVITGGEP---MRQPIEL-LCQKLLDR 110
Query: 118 KIPLCVESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRIHLKALQNILNNAKSAHFK 177
+ + +E+NG++ + + KE+ S K+ K + K +++L K + K
Sbjct: 111 DVKVQIETNGTL---YRSLPKEVSIICSPKV-------GKTGYSKIREDLL--PKISAVK 158
Query: 178 FVLESQNAAQSIIEIQSLLKQL--SLKNNEIFLMPLGTNNNELD-KNLKTLAPLAIKHGF 234
F++ A++I+E SL+ ++ + N +F+ P+ NN L+ +N + LA++ G
Sbjct: 159 FIV-----AKNILE-YSLIPEVGQTSYNIPVFIQPMDQNNQRLNGENNELAVKLALESGA 212
Query: 235 RLSDRLH 241
RLS + H
Sbjct: 213 RLSLQTH 219
>ref|NP_660741.1| (NC_004061) hypothetical 25.0 kD protein in cysJ-eno [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
gb|AAM67952.1| (AE014116) hypothetical 25.0 kD protein in cysJ-eno [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
Length = 219
Score = 63.5 bits (153), Expect = 2e-09
Identities = 63/245 (25%), Positives = 112/245 (45%), Gaps = 36/245 (14%)
Query: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTL--LNDEILTGCDSLYAV 58
M P+ E F ++QGEG G PS+F+RL GC + CK + K N+E + + +
Sbjct: 1 MYYPINEIFQTIQGEGYYTGTPSIFIRLQGCPVHCKWCDTKYTWKCNNEDQISYEKI-IM 59
Query: 59 HPKFKTSWDYYNEPK-PLIERLEDLAPNYKDFDFILTGGEPSLYFNNPILISVLEHFYRQ 117
K W Y N + LI +++ + ++TGGEP LY L+ + + ++
Sbjct: 60 KKKSNRKWSYMNVKEIILIIKIKKWTAKH----IVITGGEPCLY----NLLEITKELEKE 111
Query: 118 KIPLCVESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRIHLKALQNILNNAKSAHFK 177
+E++G+ + S L+ ++ S + K + L++ N K K
Sbjct: 112 DYKCQIETSGTELIKCS---------LNTWITLSPKINKKTLKTSILRS--NEIKYPVLK 160
Query: 178 FVLESQNAAQSIIEIQSLLKQL-SLKNNEIFLMPLGTNNNELDKNLKTLAPLAIKHGFRL 236
+ + + S+LK++ + K+N IFL P+ N L+ +KT I +RL
Sbjct: 161 --------KEDLFYLNSILKKIKNKKHNLIFLQPISQNEEALNICIKT----CIIKNWRL 208
Query: 237 SDRLH 241
S ++H
Sbjct: 209 SVQIH 213
>ref|NP_220975.1| (NC_000963) unknown [Rickettsia prowazekii]
pir||A71666 hypothetical protein RP607 - Rickettsia prowazekii
emb|CAA15051.1| (AJ235272) unknown [Rickettsia prowazekii]
Length = 234
Score = 59.3 bits (142), Expect = 4e-08
Identities = 65/246 (26%), Positives = 110/246 (44%), Gaps = 49/246 (19%)
Query: 2 KLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHPK 61
KL V F ++QGEG +G PS+F+RLGGCNL+C C T D L D
Sbjct: 26 KLEVQSIFKTIQGEGIFVGYPSIFIRLGGCNLACN--FCDTEFEDFKLIDIDQ------- 76
Query: 62 FKTSWDYYNEPKPLIERLEDLAPNYKDFD----FILTGGEPSLYFNNPILISVLEHFYRQ 117
++ ++++L+ N K+ ++TGGEP PI + + + Q
Sbjct: 77 -------------ILNKVKNLSLNSKNAKTINLVVITGGEP---MRQPIGL-LCQKLLDQ 119
Query: 118 KIPLCVESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRIHLKALQNILNNAKSAHFK 177
+ +E+NG++ + + KE+ S K+ K + K +++L + K
Sbjct: 120 DFKVQIETNGTL---YRSLPKEVFIVCSPKV-------GKTGYNKIREDLLPQISAV--K 167
Query: 178 FVLESQNAAQSII-EIQSLLKQLSLKNNEIFLMPLGTNNNELDKNLKTLA-PLAIKHGFR 235
F++ SII E+ S + +F+ + N+ L+ LA LA++ G R
Sbjct: 168 FIISKNIVEYSIIPEVGQ-----SAYDIPVFVQSMDQNDKRLNNENNELAVKLALESGAR 222
Query: 236 LSDRLH 241
LS + H
Sbjct: 223 LSLQTH 228
>ref|NP_342144.1| (NC_002754) Conserved hypothetical protein [Sulfolobus
solfataricus]
gb|AAK40934.1| (AE006691) Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 211
Score = 55.8 bits (133), Expect = 4e-07
Identities = 67/247 (27%), Positives = 112/247 (45%), Gaps = 51/247 (20%)
Query: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHP 60
MK V+E F S+QGEG+ IG PS F+RL CNL C CD+ Y
Sbjct: 4 MKYRVIEIFTSIQGEGEVIGIPSNFIRLATCNLRC--------------VWCDTKY---- 45
Query: 61 KFKTSWDYYNEPK--PLIERLEDLAPNYKDFDFILTGGEPSLYFNNPILISVLEHFYRQK 118
SW+ E +I +L+ K +TGGEP L P+ + ++
Sbjct: 46 ----SWEIGTEMSIDEIIAKLDK-----KIKTTTITGGEPLLQNILPLAKELKSIGHK-- 94
Query: 119 IPLCVESNGSIFFEFSPILKEL--HFTLSVKLSFSLEEESKRIHLKALQNILNNAKSAHF 176
+ VE+NG+I + S L+++ F++S KLS S + L+ + + ++
Sbjct: 95 --IVVETNGTI--KPSEELRKIIDIFSVSPKLSNSGHK---------LKYDFADDWATYY 141
Query: 177 KFVLESQNAAQSIIEIQSLLKQLSLKNNEIFLMPLGTNNNELDKNLKTLAPLAIKHG--F 234
KFV+ N + I E+ ++ S+ ++ L P G N ++ + + + + G F
Sbjct: 142 KFVIVYPN--KDIDEVVKFVESQSINPRKVILQPDG-NRSDYINAINEIVQIVLDRGLQF 198
Query: 235 RLSDRLH 241
R+ +LH
Sbjct: 199 RVLPQLH 205
>ref|NP_283507.1| (NC_003116) hypothetical protein NMA0707 [Neisseria meningitidis
Z2491]
pir||G81913 hypothetical protein NMA0707 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB83993.1| (AL162754) hypothetical protein NMA0707 [Neisseria meningitidis
Z2491]
Length = 212
Score = 53.5 bits (127), Expect = 2e-06
Identities = 41/123 (33%), Positives = 58/123 (46%), Gaps = 29/123 (23%)
Query: 5 VVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHPKFKT 64
+VE F SLQGEG G P++F+RLG CNL+C C T D + G SL + + K
Sbjct: 15 IVEIFESLQGEGWNTGMPAVFVRLGKCNLACGW--CDT---DYLTFGMMSLSDILGRLKA 69
Query: 65 SWDYYNEPKPLIERLEDLAPNYKDFDFILTGGEPSLYFNNPILISVLEHFYRQKIPLCVE 124
Y + I+TGGEP++ P L +L+ + LC+E
Sbjct: 70 ---------------------YAARNIIITGGEPTI---QPHLDMLLDMLKAEGYFLCIE 105
Query: 125 SNG 127
+NG
Sbjct: 106 TNG 108
>ref|NP_439345.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P45097|YGCF_HAEIN Hypothetical protein HI1189
pir||I64188 hypothetical protein HI1189 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC22842.1| (U32798) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 211
Score = 53.1 bits (126), Expect = 3e-06
Identities = 38/123 (30%), Positives = 58/123 (46%), Gaps = 29/123 (23%)
Query: 5 VVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHPKFKT 64
+VE F SLQGEG G PS+F+R G CNL C CD+ Y ++
Sbjct: 15 IVEIFESLQGEGFNTGMPSVFVRFGKCNLDC--------------PWCDTPYNNFKRWSV 60
Query: 65 SWDYYNEPKPLIERLEDLAPNYKDFDFILTGGEPSLYFNNPILISVLEHFYRQKIPLCVE 124
S ++E++ ++ + I+TGGEP++ P + +LE F L +E
Sbjct: 61 S--------QILEKVR----SFSSKNIIITGGEPTIV---PKIEYLLEQFKSDGYFLAIE 105
Query: 125 SNG 127
+NG
Sbjct: 106 TNG 108
>ref|NP_273574.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||A81190 conserved hypothetical protein NMB0529 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF40959.1| (AE002408) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 212
Score = 53.1 bits (126), Expect = 3e-06
Identities = 41/123 (33%), Positives = 58/123 (46%), Gaps = 29/123 (23%)
Query: 5 VVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHPKFKT 64
+VE F SLQGEG G P++F+RLG CNL+C C T D + G L + + KT
Sbjct: 15 IVEIFESLQGEGWNTGMPAVFVRLGKCNLACGW--CDT---DYLTFGMMGLSDILGRLKT 69
Query: 65 SWDYYNEPKPLIERLEDLAPNYKDFDFILTGGEPSLYFNNPILISVLEHFYRQKIPLCVE 124
Y + I+TGGEP++ P L +L+ + LC+E
Sbjct: 70 ---------------------YAARNIIITGGEPTI---QPHLDMLLDTLKAEGYFLCLE 105
Query: 125 SNG 127
+NG
Sbjct: 106 TNG 108
>ref|NP_350208.1| (NC_003030) Fe-S oxidoreductase of MoaA family [Clostridium
acetobutylicum]
gb|AAK81548.1|AE007858_9 (AE007858) Fe-S oxidoreductase of MoaA family [Clostridium
acetobutylicum]
Length = 221
Score = 52.4 bits (124), Expect = 5e-06
Identities = 59/213 (27%), Positives = 93/213 (42%), Gaps = 33/213 (15%)
Query: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHP 60
M VVE F S+ GEG + G+ S+F+R GCNL+C CD+ +A
Sbjct: 1 MNYKVVEKFVSINGEGLKSGQLSVFIRFAGCNLNC--------------NYCDTKWANEK 46
Query: 61 KFKTSWDYYNEPKPLIERLEDLAPNYKDFDFILTGGEPSLYFNNPILISVLEHFYRQKIP 120
K + K ++ +++ + LTGGEP L L+++L +
Sbjct: 47 DVKYT---LMTEKEILSYIKETGVK----NVTLTGGEPLLQDGIVELLNLLS--LDSTLR 97
Query: 121 LCVESNGSIFFE-FSPILKELHFTLSVKL-SFSLEEESKRIHLKALQNILNNAKSAHFKF 178
+ +E+NGS+ E F FT+ KL S+E K + K L K KF
Sbjct: 98 VEIETNGSVSLENFLNFKNAPSFTMDYKLPDSSMENFMKTSNFKFLN------KKDVIKF 151
Query: 179 VLESQNAAQSIIEIQSLLKQLSLKNNEIFLMPL 211
V+ S + ++I + LS K N I++ P+
Sbjct: 152 VVSSLKDLKKAMDIITEF-NLSKKTN-IYISPV 182
>ref|NP_441032.1| (NC_000911) hypothetical protein [Synechocystis sp. PCC 6803]
pir||S77154 hypothetical protein sll2011 - Synechocystis sp. (strain PCC 6803)
dbj|BAA17712.1| (D90908) ORF_ID:sll2011~hypothetical protein [Synechocystis sp. PCC
6803]
Length = 208
Score = 52.4 bits (124), Expect = 5e-06
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 22/103 (21%)
Query: 4 PVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHPKFK 63
P+ E+F SLQGEG G + F+RLGGC++ C CD K
Sbjct: 15 PIAETFHSLQGEGAWAGGNAFFIRLGGCDVHC--------------PWCDQ--------K 52
Query: 64 TSWDYYNEPKPLIERLEDLAPNYKDFDFILTGGEPSLYFNNPI 106
+W + P+ + L A K ++TGGEP ++ P+
Sbjct: 53 ETWPTQHHPRQTVTELVQQAVTAKPSFVVITGGEPLMHDLQPL 95
>ref|NP_245121.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK02268.1| (AE006052) unknown [Pasteurella multocida]
Length = 209
Score = 52.4 bits (124), Expect = 5e-06
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 29/126 (23%)
Query: 2 KLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHPK 61
K +VE F SLQGEG G PS+F+R G CNL+C CD+ Y +
Sbjct: 10 KYAIVEIFESLQGEGFNTGMPSIFVRFGKCNLAC--------------PWCDTPYNQY-- 53
Query: 62 FKTSWDYYNEPKPLIERLEDLAPNYKDFDFILTGGEPSLYFNNPILISVLEHFYRQKIPL 121
T+W + ++ ++ + I+TGGEP++ +L+ L+ + L
Sbjct: 54 --TTW--------TLSKIVQKVRSFSAKNIIITGGEPTIVPKIGVLLDALK---AEGYFL 100
Query: 122 CVESNG 127
+E+NG
Sbjct: 101 AIETNG 106
>ref|NP_619063.1| (NC_003552) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM07543.1| (AE011131) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 255
Score = 51.2 bits (121), Expect = 1e-05
Identities = 43/124 (34%), Positives = 62/124 (49%), Gaps = 18/124 (14%)
Query: 5 VVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHPKFKT 64
+ E F S+QGEG +G F+R GCNL+C C T N E L CD + +
Sbjct: 11 IKEIFCSVQGEGPYVGVRQAFVRFSGCNLNCN--YCDT--NFENLGTCD-----YEIIEG 61
Query: 65 SWDYYNEPKPL-IERLEDLAPNYKDFDFI-LTGGEPSLYFNNPILISVLEHFYRQKIPLC 122
+ + P P+ +E+LE L +K + LTGGEP L+ + I L + +PL
Sbjct: 62 NGIFEKIPNPINVEKLESLLQPFKKLHSVSLTGGEPLLHAD---FIEKL----KLPVPLY 114
Query: 123 VESN 126
+ESN
Sbjct: 115 LESN 118
>ref|NP_276355.1| (NC_000916) coenzyme PQQ synthesis protein III [Methanothermobacter
thermautotrophicus] [Methanothermobacter
thermautotrophicus str. Delta H]
pir||H69030 coenzyme PQQ synthesis protein III - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB85716.1| (AE000890) coenzyme PQQ synthesis protein III [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 247
Score = 51.2 bits (121), Expect = 1e-05
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 26/130 (20%)
Query: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHP 60
M+ P+VE F S+QGEG +G+ +F+R GCNL+C + CD+ + P
Sbjct: 4 MRAPIVEVFSSIQGEGLLVGRRQIFVRFAGCNLNC--------------SYCDTPESRDP 49
Query: 61 KFKTSWDYYNEPKPLIERLEDL-APNYKDFDFILTGGEPSLYFNNPILISVLEHFYRQKI 119
++ + P+ L E +E L P++ +TGGEP LY + +LE + +
Sbjct: 50 ---SAGRLFTAPE-LTEIIEGLITPDFHSIS--ITGGEPLLY--PDFITELLEESPHRTL 101
Query: 120 PLCVESNGSI 129
+E+NGS+
Sbjct: 102 ---LETNGSL 108
>ref|NP_249666.1| (NC_002516) probable radical activating enzyme [Pseudomonas
aeruginosa]
pir||D83522 probable radical activating enzyme PA0975 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG04364.1|AE004531_1 (AE004531) probable radical activating enzyme [Pseudomonas
aeruginosa]
Length = 264
Score = 50.8 bits (120), Expect = 1e-05
Identities = 66/254 (25%), Positives = 103/254 (39%), Gaps = 50/254 (19%)
Query: 3 LPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHPKF 62
L + E F+SLQGE + G P++F+RL GC L C CD+ YA
Sbjct: 54 LRITEIFYSLQGETRTAGLPTVFVRLTGCPLRCH--------------YCDTAYAFSGGD 99
Query: 63 KTSWDYYNEPKPLIERLEDLAPNYKDFDFILTGGEPSLYFNNPILISVLEHFYRQKIPLC 122
S D + ER+ P Y +TGGEP P IS+LE +
Sbjct: 100 VVSLD------AIFERVAAYKPRY----ICVTGGEP---LAQPNCISLLERLCDAGYEVS 146
Query: 123 VESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRIHLKALQNILNNAKSAHFKFVLES 182
+E++G++ + S + + L +K S E R +NI + KFV+ S
Sbjct: 147 LETSGAL--DVSRVDPRVSKVLDLKTPGSGEVGRNR-----YENIPLLTDNDQVKFVVCS 199
Query: 183 QN----AAQSIIEIQSLLKQLSLKNNEIFLMPLGTNNNELDKNLKTLAPLAIKHGF--RL 236
+ A +IE +L + E+ P + + + LA + RL
Sbjct: 200 REDYDWAVSKLIEY-----RLDQRAGEVLFSP-----SHHQVSARELADWIVADNLPVRL 249
Query: 237 SDRLHIRLWDNQKG 250
+LH LW+++ G
Sbjct: 250 QLQLHKILWNDEPG 263
>emb|CAB50782.1| (X74218) hypothetical protein [Pseudomonas putida]
Length = 215
Score = 49.3 bits (116), Expect = 4e-05
Identities = 59/250 (23%), Positives = 101/250 (39%), Gaps = 42/250 (16%)
Query: 3 LPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHPKF 62
L + E F+SLQGE + G P++F+RL GC L C+ CDS YA
Sbjct: 5 LRITEVFYSLQGETRTAGLPTVFVRLTGCPLRCQ--------------YCDSAYAFSGGT 50
Query: 63 KTSWDYYNEPKPLIERLEDLAPNYKDFDFILTGGEPSLYFNNPILISVLEHFYRQKIPLC 122
+ D ++E++ P Y +TGGEP P + +L+ +
Sbjct: 51 VRTLD------SILEQVAGFKPRY----VCVTGGEP---LAQPNALPLLQRLCDAGYEVS 97
Query: 123 VESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRIHLKALQNILNNAKSAHFKFVLES 182
+E++G++ + + + V L EES H +NI ++ KFV+ S
Sbjct: 98 LETSGALDIAGT----DTRVSRVVDLKTPGSEES---HRNRYENIEQLTRNDQVKFVICS 150
Query: 183 QNAAQSIIEIQSLLKQLSLKNNEIFLMPLGTNNNELDKNLKTLAPLAIKHGF--RLSDRL 240
+ + + + L+ + E+ P + N LA + R +L
Sbjct: 151 REDYDWAVS-KLIQYNLAERAGEVLFSP-----SHHQVNASDLADWIVADNLPVRFQLQL 204
Query: 241 HIRLWDNQKG 250
H LW+++ G
Sbjct: 205 HKLLWNDEPG 214
>ref|NP_406836.1| (NC_003143) conserved hypothetical protein [Yersinia pestis]
emb|CAC92604.1| (AJ414156) conserved hypothetical protein [Yersinia pestis]
Length = 223
Score = 48.5 bits (114), Expect = 7e-05
Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCD-SLYAVH 59
M P+ E F +LQGEG G P++F+RL GC + C + K E D V
Sbjct: 1 MLYPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCSWCDTKHTWEKEADREVDMQRIMVK 60
Query: 60 PKFKTSWDYYNEPKPLIERLEDL--APNYKDFDFILTGGEPSLYFNNPILISVLE 112
+W +E ++L DL Y ++TGGEPS+Y P L S+LE
Sbjct: 61 TAESDAWGSASE-----QQLLDLFAQQGYTARHVVITGGEPSIYDLQP-LTSLLE 109
>ref|NP_632779.1| (NC_003901) conserved protein [Methanosarcina mazei Goe1]
gb|AAM30451.1| (AE013301) conserved protein [Methanosarcina mazei Goe1]
Length = 255
Score = 48.1 bits (113), Expect = 9e-05
Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 33/179 (18%)
Query: 7 ESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHPKFKTSW 66
E F S+QGEG +G F+R GCNLSC C T + Y + + + S
Sbjct: 13 EVFCSVQGEGPYVGMRQAFVRFSGCNLSCN--YCDTNFRN------PGTYD-YERVEGSG 63
Query: 67 DYYNEPKPL-IERLEDLAPNYKDFDFI-LTGGEPSLY--FNNPILISVLEHFYRQKIPLC 122
+ P+ IE+LE + +KD + LTGGEP L+ F + +SV PL
Sbjct: 64 VFEKVSNPVNIEKLESMLQPFKDLHSVSLTGGEPLLHADFIEKLNLSV---------PLY 114
Query: 123 VESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRIHLKALQNILNNAKSAHFKFVLE 181
+ESN ++ + + + + + V F L E AL++I + AH + +E
Sbjct: 115 LESNMTLPEQARKLRENVAY---VAGDFKLPE--------ALKDISPETREAHMENTIE 162
>emb|CAD31244.1| (AL672115) HYPOTHETICAL CONSERVED PROTEIN [Mesorhizobium loti]
Length = 245
Score = 46.6 bits (109), Expect = 3e-04
Identities = 34/125 (27%), Positives = 60/125 (47%), Gaps = 32/125 (25%)
Query: 11 SLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHPKFKTSWDYYN 70
++QGEG IG P++F+R GGC+ C + CDSL+AV +F+ W+ +
Sbjct: 18 TIQGEGVLIGLPTVFVRTGGCDYRC--------------SWCDSLHAVDRRFRHDWEMMS 63
Query: 71 EPKPLIERLEDLAPNYKDFDFILTGGEP---SLYFNNPI---LISVLEHFYRQKIPLCVE 124
P + +++ L+GG+P SL NP L +++ + + +E
Sbjct: 64 -PDAVWQKV-----------IALSGGQPVMVSLSGGNPAIQPLSQLIDRGHGEGYRFALE 111
Query: 125 SNGSI 129
+ GS+
Sbjct: 112 TQGSV 116
>ref|NP_614101.1| (NC_003551) Organic-radical-activating enzyme [Methanopyrus
kandleri AV19]
gb|AAM02031.1| (AE010372) Organic-radical-activating enzyme [Methanopyrus kandleri
AV19]
Length = 252
Score = 46.2 bits (108), Expect = 3e-04
Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 27/228 (11%)
Query: 3 LPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYA----V 58
L V E F SLQGEGK +G+P F+R GCNL C DE + A V
Sbjct: 13 LNVYEVFLSLQGEGKFVGEPQAFVRFSGCNLRC-------AYCDEPASRSSRRRALIRRV 65
Query: 59 HPKFKTSWDYYNEPKPLIERLEDLAPNYKDFDFI-LTGGEPSLYFNNPILISVLEHFYRQ 117
+ + P+ ++E L +L F + LTGGEP L L ++E +
Sbjct: 66 SGEVELELPVPCGPEDVVEVLVELEDLEDTFGTVSLTGGEP-LVQPWGALKELIERLRER 124
Query: 118 KIPLCVESNGSIFFEFSPILKELHFTLSVKLSF-----SLEEESKRIHLKALQNILNNAK 172
+ +E+N S+ + +P++ EL +S + ++++ R L+ L+ I +
Sbjct: 125 GFRVLLETNASL-PDRAPLIDELADVVSADVKLPSHGPNMDDFPDRC-LRFLERI---SA 179
Query: 173 SAHFKFVLESQNAAQSIIEIQSLLKQL-SLKNNEIFLMPLGTNNNELD 219
+ K VL + Q +S LK L L I+L P + ++L+
Sbjct: 180 EVYAKVVLVDEECYQ---HAESALKGLHRLGVEPIYLQPATGSEHDLE 224
>ref|NP_243108.1| (NC_002570) BH2242~unknown conserved protein [Bacillus halodurans]
dbj|BAB05961.1| (AP001514) BH2242~unknown conserved protein [Bacillus halodurans]
Length = 236
Score = 45.4 bits (106), Expect = 6e-04
Identities = 56/264 (21%), Positives = 122/264 (46%), Gaps = 46/264 (17%)
Query: 2 KLPVVESFF-SLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHP 60
++PV+E F ++QGEG IG+ ++F+R GGC+ SC + CDS +
Sbjct: 3 RIPVMEIFGPTVQGEGMVIGQKTMFVRTGGCDYSC--------------SWCDSAFTWDG 48
Query: 61 KFKTSWDYYNEPKPLIERLEDLAPNYKDFDFI-LTGGEPSLYFNNPILISVLEHFYRQKI 119
K + +E +I +LE++ + F + ++GG P+L+ + +++ + + I
Sbjct: 49 SLKATLRTADE---IIAKLEEIGG--ERFSHVSISGGNPALHKG---IGELVDKLHDKGI 100
Query: 120 PLCVESNGSIFFEFSPILKELHFTLS------------VKLSFSLEE-ESKRIHLKALQN 166
+ +E+ GS++ ++ LK T+S KL +E ++K++ LK +
Sbjct: 101 RVALETQGSLWQDW--FLKIDDLTISPKPPSSQMKTDFTKLDQIIERLDTKQMSLKVV-- 156
Query: 167 ILNNAKSAHFKFVLESQNAAQSIIEIQSLLKQLSLKNNEIFLMPLGTNNNELDKNLKTLA 226
+ N+ + ++V E +++ + + +N++ + L L +
Sbjct: 157 VFNDEDFRYAEYVHERYPHVPFFLQVGN--EDTVTGDNDLLIRTLLDRYEWL---IAKAT 211
Query: 227 PLAIKHGFRLSDRLHIRLWDNQKG 250
I + ++ +LH +W N++G
Sbjct: 212 DSTIMNDAKILPQLHTLVWGNKRG 235
>ref|NP_389257.1| (NC_000964) similar to coenzyme PQQ synthesis [Bacillus subtilis]
pir||C69868 coenzyme PQQ synthesis homolog ykvL - Bacillus subtilis
emb|CAB13247.1| (Z99111) similar to coenzyme PQQ synthesis [Bacillus subtilis]
Length = 243
Score = 45.4 bits (106), Expect = 6e-04
Identities = 66/278 (23%), Positives = 113/278 (39%), Gaps = 70/278 (25%)
Query: 3 LPVVESFF-SLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHPK 61
+PV+E F ++QGEG IG+ ++F+R GC+ SC + CDS +
Sbjct: 5 IPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDYSC--------------SWCDSAF----- 45
Query: 62 FKTSWDYYNEPKPLIERLEDLAPNYKDF------DFILTGGEPSLYFNNPILISVLEHFY 115
+WD + E++ KD ++GG P+L I +L+
Sbjct: 46 ---TWDGSAKKDIRWMTAEEIFAELKDIGGDAFSHVTISGGNPALLKQLDAFIELLK--- 99
Query: 116 RQKIPLCVESNGSIFFEFSPILKELHF----------TLSVKLSFSLE--EESKRIHLKA 163
I +E+ G+++ ++ ++ +L T KL L +E+ R H +
Sbjct: 100 ENNIRAALETQGTVYQDWFTLIDDLTISPKPPSSKMVTNFQKLDHILTSLQENDRQHAVS 159
Query: 164 LQNILNN------AKSAH-----FKFVLESQNAAQSIIEIQSLLKQLSLKNNEIFLMPLG 212
L+ ++ N AK+ H F L+ N + QSL+ L LG
Sbjct: 160 LKVVIFNDEDLEFAKTVHKRYPGIPFYLQVGNDDVHTTDDQSLIAHL-----------LG 208
Query: 213 TNNNELDKNLKTLAPLAIKHGFRLSDRLHIRLWDNQKG 250
+DK +A A + R+ +LH LW N++G
Sbjct: 209 KYEALVDK----VAVDAELNLVRVLPQLHTLLWGNKRG 242
>ref|NP_248655.1| (NC_000909) coenzyme PQQ synthesis protein III isolog (Haemophilus
influenzae} [Methanococcus jannaschii]
[Methanocaldococcus jannaschii]
pir||C64505 coenzyme PQQ synthesis protein III homolog - Methanococcus
jannaschii
gb|AAB99666.1| (U67605) coenzyme PQQ synthesis protein III isolog (Haemophilus
influenzae} [Methanococcus jannaschii]
[Methanocaldococcus jannaschii]
Length = 243
Score = 44.7 bits (104), Expect = 0.001
Identities = 57/248 (22%), Positives = 103/248 (40%), Gaps = 27/248 (10%)
Query: 7 ESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHPKFKTSW 66
E F S+ GEGK IG+ +F+R GC L+C + DE G + K S
Sbjct: 4 EIFNSIMGEGKYIGRRFIFVRFAGCPLNC-------VYCDEESKG---YFNRVEKIPGSG 53
Query: 67 DYYNEPKPLIERLEDLAPNYKDFDFI---LTGGEPSLYFNNPILISVLEHFYRQKIPLCV 123
++ K IE + + K D TGGEP LY + + E + +
Sbjct: 54 EFETLQKMEIEDIINAIDKLKTPDLFAVSFTGGEPLLYHKQ--IKEIAEILKDKGYRTFL 111
Query: 124 ESNGSI---FFEFSPILKELHFTLSVKLSFSLEEESKRIH---LKALQNILNNAKSAHFK 177
ESNG F F + + L + +E+ ++++ LK ++ + N + K
Sbjct: 112 ESNGMFPERIFYFD--IASIDIKLKEHFEYIKDEDYEKLYKNELKTIKKLYNLNSDIYAK 169
Query: 178 FVLESQNAAQSIIEIQSLLKQLS-LKNNEIFLMPLGTNNNELDKNLKTLAPLAIKHGFRL 236
V+ + +I +++ + K LS + N + + P+ + N + + L + G L
Sbjct: 170 VVIMEET---NIEDVKIIAKDLSDIGNITLCIQPVTPHGNIKSPSQRKLFEIMEACGEYL 226
Query: 237 SDRLHIRL 244
D + + +
Sbjct: 227 KDNVMLTI 234
>ref|NP_457340.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
ref|NP_461872.1| (NC_003197) putative Organic radical activating enzymes [Salmonella
typhimurium LT2]
gb|AAL21831.1| (AE008835) putative Organic radical activating enzymes [Salmonella
typhimurium LT2]
emb|CAD06057.1| (AL627276) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 223
Score = 44.3 bits (103), Expect = 0.001
Identities = 35/113 (30%), Positives = 54/113 (46%), Gaps = 16/113 (14%)
Query: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHP 60
M+ P+ E F +LQGEG G P++F+RL GC + C + K D++ SL+++
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTW-DKLSDREVSLFSILA 59
Query: 61 KFKTS--WDYYNEPKPLIERLEDL-----APNYKDFDFILTGGEPSLYFNNPI 106
K K S W + EDL Y ++TGGEP ++ P+
Sbjct: 60 KTKESDKWGAASS--------EDLLAVINRQGYTARHVVITGGEPCIHDLMPL 104
>ref|NP_106394.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB52180.1| (AP003007) hypothetical protein [Mesorhizobium loti]
Length = 245
Score = 44.3 bits (103), Expect = 0.001
Identities = 21/57 (36%), Positives = 32/57 (55%), Gaps = 14/57 (24%)
Query: 11 SLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHPKFKTSWD 67
++QGEG IG P++F+R GGC+ C + CDSL+AV +F+ W+
Sbjct: 18 TIQGEGVLIGLPTVFVRTGGCDYRC--------------SWCDSLHAVDRRFRHDWE 60
>ref|NP_311660.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
ref|NP_417257.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P55139|YGCF_ECOLI Hypothetical protein ygcF
pir||E65059 hypothetical protein b2777 - Escherichia coli (strain K-12)
gb|AAA69287.1| (U29580) ORF_f223 [Escherichia coli]
gb|AAC75819.1| (AE000361) orf, hypothetical protein [Escherichia coli K12]
dbj|BAB37056.1| (AP002562) hypothetical protein [Escherichia coli O157:H7]
Length = 223
Score = 43.5 bits (101), Expect = 0.002
Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 18/109 (16%)
Query: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCD-SLYAVH 59
M+ P+ E F +LQGEG G P++F+RL GC + C C T E L + SL+++
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAW--CDTKHTWEKLEDREVSLFSIL 58
Query: 60 PKFKTS--WDYYNEPKPLIERLEDL-----APNYKDFDFILTGGEPSLY 101
K K S W + EDL Y ++TGGEP ++
Sbjct: 59 AKTKESDKWGAASS--------EDLLAVIGRQGYTARHVVITGGEPCIH 99
>ref|NP_638362.1| (NC_003902) radical activating enzyme [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gb|AAM42286.1| (AE012414) radical activating enzyme [Xanthomonas campestris pv.
campestris str. ATCC 33913]
Length = 227
Score = 43.5 bits (101), Expect = 0.002
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 14/58 (24%)
Query: 2 KLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVH 59
+L + E F SLQGE + G P++F+RL GC L C T CD+ YA H
Sbjct: 17 RLKITEIFLSLQGEAEAAGWPTVFVRLTGCPLRC--------------TYCDTAYAFH 60
>ref|NP_289328.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
gb|AAG57887.1|AE005505_5 (AE005505) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
Length = 223
Score = 43.1 bits (100), Expect = 0.003
Identities = 36/106 (33%), Positives = 52/106 (48%), Gaps = 12/106 (11%)
Query: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCD-SLYAVH 59
M+ P+ E F +LQGEG G P++F+RL GC + C C T E L + SL+++
Sbjct: 1 MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAW--CDTKHTWEKLEDREVSLFSIL 58
Query: 60 PKFKTS--WDYYNEPKPL--IERLEDLAPNYKDFDFILTGGEPSLY 101
K K S W + L I R Y ++TGGEP ++
Sbjct: 59 AKTKESDKWGAASSEBLLAVIGR-----QGYTARHVVITGGEPCIH 99
>ref|NP_110815.1| (NC_002689) Predicted organic radical activating enzyme
[Thermoplasma volcanium]
dbj|BAB59441.1| (AP000992) hypothetical protein [Thermoplasma volcanium]
Length = 209
Score = 42.7 bits (99), Expect = 0.004
Identities = 22/74 (29%), Positives = 35/74 (46%)
Query: 5 VVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHPKFKT 64
+ E F S+QGEG IG P LF+R CN+ C+ + K + + + K
Sbjct: 3 ITEIFHSIQGEGTLIGIPMLFVRTNVCNIRCEWCDTKYSFYGGREIALSDILNIVKEAKE 62
Query: 65 SWDYYNEPKPLIER 78
W + +PL++R
Sbjct: 63 QWVCFTGGEPLVQR 76
>ref|NP_357261.1| (NC_003063) AGR_L_2955p [Agrobacterium tumefaciens]
[Agrobacterium tumefaciens str. C58 (Cereon)]
ref|NP_533841.1| (NC_003305) radical activating protein [Agrobacterium tumefaciens
str. C58 (U. Washington)]
gb|AAK90046.1| (AE008348) AGR_L_2955p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL44157.1| (AE009264) radical activating protein [Agrobacterium tumefaciens
str. C58 (U. Washington)]
Length = 251
Score = 42.4 bits (98), Expect = 0.005
Identities = 19/56 (33%), Positives = 32/56 (56%), Gaps = 14/56 (25%)
Query: 11 SLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHPKFKTSW 66
++QGEG IG P++F+R GGC+ C + CD+L+AV +++ +W
Sbjct: 24 TIQGEGPLIGLPTVFVRTGGCDYRC--------------SWCDTLHAVDSEYRDTW 65
>ref|NP_394815.1| (NC_002578) ATP binding cassette transporter, ExsD protein
related [Thermoplasma acidophilum]
emb|CAC12480.1| (AL445067) ATP binding cassette transporter, ExsD protein related
[Thermoplasma acidophilum]
Length = 209
Score = 42.0 bits (97), Expect = 0.006
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 5 VVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHPKFKT 64
+ E F S+QGEG G P LF+R CN+ C+ + K L + + K
Sbjct: 3 ITEIFHSIQGEGPYAGLPMLFVRTNVCNIRCEWCDTKYSFYGGKEIPLSELLGIVKEAKE 62
Query: 65 SWDYYNEPKPLIER 78
W + +PL++R
Sbjct: 63 GWVCFTGGEPLVQR 76
>ref|NP_299180.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||C82625 conserved hypothetical protein XF1894 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF84700.1|AE004009_7 (AE004009) conserved hypothetical protein [Xylella fastidiosa
9a5c]
Length = 227
Score = 42.0 bits (97), Expect = 0.006
Identities = 22/58 (37%), Positives = 30/58 (50%), Gaps = 14/58 (24%)
Query: 2 KLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVH 59
+L + E F SLQGE +G P++F+RL GC L C+ CD+ YA H
Sbjct: 17 QLKISEIFLSLQGEANSVGWPTVFVRLTGCPLRCQ--------------YCDTAYAFH 60
>ref|NP_539011.1| (NC_003317) EXSD PROTEIN [Brucella melitensis]
gb|AAL51275.1| (AE009452) EXSD PROTEIN [Brucella melitensis]
Length = 243
Score = 41.6 bits (96), Expect = 0.008
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 28/123 (22%)
Query: 11 SLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHPKFKTSWDYYN 70
++QGEG IG+P++F+R GGC D CD+L+AV +F+ W
Sbjct: 16 TIQGEGVLIGEPTVFVRTGGC--------------DYRWAWCDNLHAVESRFRHEW---- 57
Query: 71 EPKPL-IERL--EDLAPNYK-DFDFILTGGEPSLYFNNPILISVLEHFYRQKIPLCVESN 126
KP+ +E + E A + K L+GG P++ L ++++H + +E+
Sbjct: 58 --KPMSVEAIWHEVTALSQKRPLTVSLSGGNPAI----QPLGALIKHGKAEGYRFALETQ 111
Query: 127 GSI 129
GS+
Sbjct: 112 GSV 114
>ref|NP_437601.1| (NC_003078) hypothetical conserved protein [Sinorhizobium
meliloti]
emb|CAA12532.1| (AJ225561) ExsD protein [Sinorhizobium meliloti]
emb|CAC49461.1| (AL603645) hypothetical conserved protein [Sinorhizobium
meliloti]
Length = 245
Score = 41.6 bits (96), Expect = 0.008
Identities = 20/56 (35%), Positives = 30/56 (52%), Gaps = 14/56 (25%)
Query: 11 SLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHPKFKTSW 66
++QGEG IG P++F+R GGC+ C + CDSL+AV ++ W
Sbjct: 18 TIQGEGVLIGLPTVFVRSGGCDYRC--------------SWCDSLHAVDSNYRHEW 59
>ref|NP_069277.1| (NC_000917) conserved hypothetical protein [Archaeoglobus fulgidus]
pir||A69305 conserved hypothetical protein AF0441 - Archaeoglobus fulgidus
gb|AAB90793.1| (AE001074) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 225
Score = 41.6 bits (96), Expect = 0.008
Identities = 37/116 (31%), Positives = 49/116 (41%), Gaps = 16/116 (13%)
Query: 1 MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTLLNDEILTGCDSLYAVHP 60
M+ ++E F S+QGEG IG LF+R GCNL+C + C T E C L A
Sbjct: 1 MRANLIEIFESIQGEGFYIGVRQLFVRFAGCNLNC--YYCDTPKTSE---NCLDLTANRT 55
Query: 61 -KFKTSWDYYNEPKPLIERLEDLAPNYKDFDFILTGGEPSLYFNNPILISVLEHFY 115
K S +Y ++ + K TGGEP L +S FY
Sbjct: 56 LKNPVSAEY----------VQGRIDSSKVHSVCFTGGEPMLQAEFIASLSKTHPFY 101
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.321 0.140 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,044,623
Number of Sequences: 1026957
Number of extensions: 7344668
Number of successful extensions: 15777
Number of sequences better than 1.0e-02: 39
Number of HSP's better than 0.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 15735
Number of HSP's gapped (non-prelim): 44
length of query: 251
length of database: 324,149,939
effective HSP length: 118
effective length of query: 133
effective length of database: 202,969,013
effective search space: 26994878729
effective search space used: 26994878729
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 96 (41.6 bits)