BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645553|ref|NP_207729.1| hypothetical protein
[Helicobacter pylori 26695]
(264 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207729.1| (NC_000915) hypothetical protein [Helicoba... 535 e-151
ref|NP_223590.1| (NC_000921) putative [Helicobacter pylori ... 397 e-110
ref|NP_281230.1| (NC_002163) hypothetical protein Cj0008 [C... 110 2e-23
ref|NP_077921.1| (NC_002162) conserved hypothetical [Ureapl... 99 4e-20
ref|NP_223591.1| (NC_000921) putative [Helicobacter pylori ... 75 7e-13
gb|AAG19859.1| (AE005070) Vng1585c [Halobacterium sp. NRC-1] 74 1e-12
ref|NP_444223.1| (NC_002607) Uncharacterized conserved prot... 74 1e-12
>ref|NP_207729.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64637 hypothetical protein HP0937 - Helicobacter pylori (strain 26695)
gb|AAD07990.1| (AE000603) H. pylori predicted coding region HP0937 [Helicobacter
pylori 26695]
Length = 264
Score = 535 bits (1379), Expect = e-151
Identities = 264/264 (100%), Positives = 264/264 (100%)
Query: 1 MSYSDLLMSILTASFSSDIREKMNELVDTLKDKGFSNMGQDQVLKTCLLLIGKDTTFELK 60
MSYSDLLMSILTASFSSDIREKMNELVDTLKDKGFSNMGQDQVLKTCLLLIGKDTTFELK
Sbjct: 1 MSYSDLLMSILTASFSSDIREKMNELVDTLKDKGFSNMGQDQVLKTCLLLIGKDTTFELK 60
Query: 61 NFNKKNIKEIEENWEKITESIYDAAKLLETFGYVGYLGSAYILSSVAYFYFLNQKMDKND 120
NFNKKNIKEIEENWEKITESIYDAAKLLETFGYVGYLGSAYILSSVAYFYFLNQKMDKND
Sbjct: 61 NFNKKNIKEIEENWEKITESIYDAAKLLETFGYVGYLGSAYILSSVAYFYFLNQKMDKND 120
Query: 121 EEQALKFVRNAQITSYFTPSTDTKLNNIDNSMKDVKIFESFNHNLAKHQTSPLKITNDAI 180
EEQALKFVRNAQITSYFTPSTDTKLNNIDNSMKDVKIFESFNHNLAKHQTSPLKITNDAI
Sbjct: 121 EEQALKFVRNAQITSYFTPSTDTKLNNIDNSMKDVKIFESFNHNLAKHQTSPLKITNDAI 180
Query: 181 EEMMCSSSHARVFPILQILYPHLKYKTTTFHIDHIYPKSKFKKENKKLDKDFYGWGNYLF 240
EEMMCSSSHARVFPILQILYPHLKYKTTTFHIDHIYPKSKFKKENKKLDKDFYGWGNYLF
Sbjct: 181 EEMMCSSSHARVFPILQILYPHLKYKTTTFHIDHIYPKSKFKKENKKLDKDFYGWGNYLF 240
Query: 241 NLQLLEGAENQAKKDKNPEIWLKE 264
NLQLLEGAENQAKKDKNPEIWLKE
Sbjct: 241 NLQLLEGAENQAKKDKNPEIWLKE 264
>ref|NP_223590.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71877 hypothetical protein jhp0872 - Helicobacter pylori (strain J99)
gb|AAD06452.1| (AE001517) putative [Helicobacter pylori J99]
Length = 274
Score = 397 bits (1020), Expect = e-110
Identities = 192/222 (86%), Positives = 207/222 (92%)
Query: 43 VLKTCLLLIGKDTTFELKNFNKKNIKEIEENWEKITESIYDAAKLLETFGYVGYLGSAYI 102
+LKTCLLLIGKDTTFELKNFNK+NIKEIE+NWEKITESIY+A KLLE FGY GYLGS YI
Sbjct: 1 MLKTCLLLIGKDTTFELKNFNKQNIKEIEDNWEKITESIYNATKLLENFGYAGYLGSVYI 60
Query: 103 LSSVAYFYFLNQKMDKNDEEQALKFVRNAQITSYFTPSTDTKLNNIDNSMKDVKIFESFN 162
LSS+AYFYFL KM++ND+EQALKFVRNAQITSYFTPSTDTKL+ I +SMKD FESFN
Sbjct: 61 LSSLAYFYFLKSKMNENDKEQALKFVRNAQITSYFTPSTDTKLSIIAHSMKDAPTFESFN 120
Query: 163 HNLAKHQTSPLKITNDAIEEMMCSSSHARVFPILQILYPHLKYKTTTFHIDHIYPKSKFK 222
HNLAKHQTSPLKITNDAIEEMMCSSSHARVFPILQILYP+L YKTTTFHIDHIYPKSKFK
Sbjct: 121 HNLAKHQTSPLKITNDAIEEMMCSSSHARVFPILQILYPNLNYKTTTFHIDHIYPKSKFK 180
Query: 223 KENKKLDKDFYGWGNYLFNLQLLEGAENQAKKDKNPEIWLKE 264
KENKKLDKDFY GN+L+NLQLLEG ENQAKKDK+PE+WLKE
Sbjct: 181 KENKKLDKDFYECGNHLYNLQLLEGTENQAKKDKDPEVWLKE 222
>ref|NP_281230.1| (NC_002163) hypothetical protein Cj0008 [Campylobacter jejuni]
pir||C81416 hypothetical protein Cj0008 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72501.1| (AL139074) hypothetical protein Cj0008 [Campylobacter jejuni]
Length = 583
Score = 110 bits (274), Expect = 2e-23
Identities = 86/293 (29%), Positives = 149/293 (50%), Gaps = 34/293 (11%)
Query: 1 MSYSDLLMSILTASFSS-DIREKMNELVDTLKDKGFSNMGQDQVLKTCLLLIGKDTTFEL 59
+ YSD+L SI A+++ D R ++N LVD + + ++ +D +LK L L + F++
Sbjct: 249 LDYSDILFSIAIANWNKIDARTEINNLVDKINEN--FDISKDLILKGFLYLFHNNIKFQI 306
Query: 60 KNFNKKNIKEIEENWEKITESIYDAAKLLETFGYVGY-LGSAYILSSVAYFYF----LNQ 114
+F+K I+ IE WE I + + +LL +FG+ L S + + YF + N
Sbjct: 307 NSFDKNFIESIEAKWEGIKNAFIETFRLLRSFGFEAKTLSSNNAILPILYFIYHKNLTNN 366
Query: 115 KMD--KNDEEQAL--KFVRNAQITSYFTPSTDTKLNNIDNSM------------KDVKIF 158
+D K +E +A+ K++ A I F S+DT L+N+ + +++++F
Sbjct: 367 IVDSVKCNENRAIIKKWLLRAIILKPFGGSSDTVLSNMRKAFIKDFKQNSGFFDREIELF 426
Query: 159 --ESFNHNLAKHQTSPLK-ITNDAIEEMMCSSSHARVFPILQILYPHLKYKTTTFHIDHI 215
E QT + + N+ IE C + F +L +LYP+L YK FH DH+
Sbjct: 427 PLEEIEKEAKYIQTIDEEYLENNVIE---CRKNSPEAFAVLSLLYPNLDYKNNNFHKDHL 483
Query: 216 YPKSKFKKENK--KLDKDFYGWGNY--LFNLQLLEGAENQAKKDKNPEIWLKE 264
+P+S +K+ K K + + Y L NLQ+L+ EN++K +K + W+ E
Sbjct: 484 HPESAYKEYEKLYKATDNCISFNIYDSLPNLQMLDANENESKNNKPLKQWVNE 536
>ref|NP_077921.1| (NC_002162) conserved hypothetical [Ureaplasma urealyticum]
pir||B82936 conserved hypothetical UU090 [imported] - Ureaplasma urealyticum
gb|AAF30496.1|AE002108_9 (AE002108) conserved hypothetical [Ureaplasma urealyticum]
Length = 584
Score = 99.4 bits (246), Expect = 4e-20
Identities = 76/279 (27%), Positives = 136/279 (48%), Gaps = 16/279 (5%)
Query: 1 MSYSDLLMSILTASFSSDIREKMNELVDTLKDKGFS-NMGQDQVLKTCLLLIGKDTTFEL 59
+S SDLL S L + +E ++ L+ L G + +D +++ L+L+ +T ++
Sbjct: 265 LSKSDLLFSTLIDGWKEG-KENIDTLLSDLNSAGDGFSFTRDYLMRLALVLVDANTNLKI 323
Query: 60 KNFNKKNIKEIEENWEKITESIYDAAKLLETFGYVGYLGSAYILS-SVAYFYFLNQKMD- 117
+ K IKEI +NW+KI +++ ++LL + G ++Y + +AY+++ K+D
Sbjct: 324 DSLTSKTIKEIRDNWQKIKKALEKLSELLVSIGMCDENMTSYNATIPLAYYFYKGGKIDT 383
Query: 118 KNDEEQALKFVRNAQITSYFTPSTDTKLNNIDNSMKDVKIFESFNHNLAKHQT----SPL 173
+++A KF+ + F +++ LN ++K V F+ L T
Sbjct: 384 AESKKEARKFLAVSMSKGLFGVASNDSLNQSRTALKSVNEKTPFSLTLFSSITLTGNRTF 443
Query: 174 KITNDAIEEMMCSSSHAR-VFPILQILYPHLKYKTTTFHIDHIYPKSKFKKEN-KKLD-- 229
+ D IE + + F IL +LYP+LK FH DH +P + F +N KKL
Sbjct: 444 TASKDDIEYWLTKFEKGKNTFIILSLLYPNLKLSQVEFHQDHCHPYTSFDDKNIKKLGLT 503
Query: 230 ----KDFYGWGNYLFNLQLLEGAENQAKKDKNPEIWLKE 264
K++ N + NLQ L G EN++K + W+K+
Sbjct: 504 EDKIKEWQFKRNLIPNLQFLAGKENESKNKRPLSNWVKD 542
>ref|NP_223591.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71877 hypothetical protein jhp0873 - Helicobacter pylori (strain J99)
gb|AAD06453.1| (AE001517) putative [Helicobacter pylori J99]
Length = 291
Score = 75.1 bits (183), Expect = 7e-13
Identities = 37/39 (94%), Positives = 38/39 (96%)
Query: 1 MSYSDLLMSILTASFSSDIREKMNELVDTLKDKGFSNMG 39
+SYSDLLMSILTASFSSDIREKMNELVD LKDKGFSNMG
Sbjct: 253 LSYSDLLMSILTASFSSDIREKMNELVDALKDKGFSNMG 291
>gb|AAG19859.1| (AE005070) Vng1585c [Halobacterium sp. NRC-1]
Length = 414
Score = 74.3 bits (181), Expect = 1e-12
Identities = 77/313 (24%), Positives = 145/313 (45%), Gaps = 71/313 (22%)
Query: 4 SDLLMSILTASFSSD-------IREKMNELVDTL---KDKGFSNMGQDQVLKTCLLLIGK 53
SD+L+SI TA +S + RE++ LVD L + +G + VL+ L+L G+
Sbjct: 60 SDILLSIATAHWSREDQTNSIVAREEIQALVDKLNKHESRGTVEFDSNFVLRA-LMLTGE 118
Query: 54 --DTTFELKNFNKKNIKEIEENW--EKITESIYDAAKLLETFGYV-GYLGSAYILSSVAY 108
+F L NF K + ++++ W + +S++ L++++G+ ++ S L V Y
Sbjct: 119 VSSLSFSLSNFTKSTLSKMKDAWMSPEFEKSLFRTLDLMKSYGFTTSHIRSKISLLPVIY 178
Query: 109 FYFLN--------QKMDKNDEEQAL----KFVRNAQITSYFT--------------PSTD 142
+++ N K K + ++ L V N ++T+ T P+ +
Sbjct: 179 YFYSNGNPTISYESKHGKENRQKILYWMCSIVTNGELTTGGTIQTIRGVRKALRESPANE 238
Query: 143 TKLNNIDNSMKDVKIFESFNHNLAKHQTSPLKITNDAIEEMMCSSSHARVFPILQILY-P 201
LN I++++ + +N ++ + + + ND+ S S+ + +L +LY P
Sbjct: 239 FPLNEIESTLNN------YNKSMGFDRENIERWFNDS------SKSNRVLRVVLSLLYFP 286
Query: 202 HLKYKTTTFHIDHIYPKSKFK------------KENKKLDKDFYGWGNYLFNLQLLEGAE 249
++ + +F +DHI+PKSK K +E K++K + NLQL+
Sbjct: 287 NVANENYSFEVDHIFPKSKLKSDYLVDEVGMSREEASKIEK----LRDNPANLQLIRERP 342
Query: 250 NQAKKDKNPEIWL 262
N+ K DK P WL
Sbjct: 343 NRKKSDKPPAEWL 355
>ref|NP_444223.1| (NC_002607) Uncharacterized conserved protein [Halobacterium sp.
NRC-1]
Length = 513
Score = 74.3 bits (181), Expect = 1e-12
Identities = 77/313 (24%), Positives = 145/313 (45%), Gaps = 71/313 (22%)
Query: 4 SDLLMSILTASFSSD-------IREKMNELVDTL---KDKGFSNMGQDQVLKTCLLLIGK 53
SD+L+SI TA +S + RE++ LVD L + +G + VL+ L+L G+
Sbjct: 159 SDILLSIATAHWSREDQTNSIVAREEIQALVDKLNKHESRGTVEFDSNFVLRA-LMLTGE 217
Query: 54 --DTTFELKNFNKKNIKEIEENW--EKITESIYDAAKLLETFGYV-GYLGSAYILSSVAY 108
+F L NF K + ++++ W + +S++ L++++G+ ++ S L V Y
Sbjct: 218 VSSLSFSLSNFTKSTLSKMKDAWMSPEFEKSLFRTLDLMKSYGFTTSHIRSKISLLPVIY 277
Query: 109 FYFLN--------QKMDKNDEEQAL----KFVRNAQITSYFT--------------PSTD 142
+++ N K K + ++ L V N ++T+ T P+ +
Sbjct: 278 YFYSNGNPTISYESKHGKENRQKILYWMCSIVTNGELTTGGTIQTIRGVRKALRESPANE 337
Query: 143 TKLNNIDNSMKDVKIFESFNHNLAKHQTSPLKITNDAIEEMMCSSSHARVFPILQILY-P 201
LN I++++ + +N ++ + + + ND+ S S+ + +L +LY P
Sbjct: 338 FPLNEIESTLNN------YNKSMGFDRENIERWFNDS------SKSNRVLRVVLSLLYFP 385
Query: 202 HLKYKTTTFHIDHIYPKSKFK------------KENKKLDKDFYGWGNYLFNLQLLEGAE 249
++ + +F +DHI+PKSK K +E K++K + NLQL+
Sbjct: 386 NVANENYSFEVDHIFPKSKLKSDYLVDEVGMSREEASKIEK----LRDNPANLQLIRERP 441
Query: 250 NQAKKDKNPEIWL 262
N+ K DK P WL
Sbjct: 442 NRKKSDKPPAEWL 454
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.316 0.133 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,710,934
Number of Sequences: 1026957
Number of extensions: 6748520
Number of successful extensions: 23294
Number of sequences better than 1.0e-02: 7
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 23281
Number of HSP's gapped (non-prelim): 7
length of query: 264
length of database: 324,149,939
effective HSP length: 119
effective length of query: 145
effective length of database: 201,942,056
effective search space: 29281598120
effective search space used: 29281598120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 96 (41.6 bits)