BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645554|ref|NP_207730.1| hypothetical protein
[Helicobacter pylori 26695]
(115 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207730.1| (NC_000915) hypothetical protein [Helicoba... 235 8e-62
ref|NP_223591.1| (NC_000921) putative [Helicobacter pylori ... 205 7e-53
ref|NP_077921.1| (NC_002162) conserved hypothetical [Ureapl... 64 3e-10
ref|NP_281230.1| (NC_002163) hypothetical protein Cj0008 [C... 62 1e-09
ref|NP_579044.1| (NC_003413) hypothetical protein [Pyrococc... 58 2e-08
ref|NP_228799.1| (NC_000853) hypothetical protein [Thermoto... 51 3e-06
>ref|NP_207730.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64637 hypothetical protein HP0938 - Helicobacter pylori (strain 26695)
gb|AAD07991.1| (AE000603) H. pylori predicted coding region HP0938 [Helicobacter
pylori 26695]
Length = 115
Score = 235 bits (599), Expect = 8e-62
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MGVFLDKSIKDVVDGLNVRYFLPDIQREYVWLKKADEKKIEQLFDSILRGYPIGSFLFWK 60
MGVFLDKSIKDVVDGLNVRYFLPDIQREYVWLKKADEKKIEQLFDSILRGYPIGSFLFWK
Sbjct: 1 MGVFLDKSIKDVVDGLNVRYFLPDIQREYVWLKKADEKKIEQLFDSILRGYPIGSFLFWK 60
Query: 61 LQKEDIAKSDEQDSDKLNFQLYQFITNYDVRKPHNEKIRIEQINRDDLYIVANSV 115
LQKEDIAKSDEQDSDKLNFQLYQFITNYDVRKPHNEKIRIEQINRDDLYIVANSV
Sbjct: 61 LQKEDIAKSDEQDSDKLNFQLYQFITNYDVRKPHNEKIRIEQINRDDLYIVANSV 115
>ref|NP_223591.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71877 hypothetical protein jhp0873 - Helicobacter pylori (strain J99)
gb|AAD06453.1| (AE001517) putative [Helicobacter pylori J99]
Length = 291
Score = 205 bits (522), Expect = 7e-53
Identities = 101/111 (90%), Positives = 103/111 (91%)
Query: 1 MGVFLDKSIKDVVDGLNVRYFLPDIQREYVWLKKADEKKIEQLFDSILRGYPIGSFLFWK 60
MGVFLDKSIK+VVD LN RYFLPDIQREYVWL+ AD KKIEQLFDSILRGYPIG FLFWK
Sbjct: 1 MGVFLDKSIKEVVDELNGRYFLPDIQREYVWLQNADGKKIEQLFDSILRGYPIGFFLFWK 60
Query: 61 LQKEDIAKSDEQDSDKLNFQLYQFITNYDVRKPHNEKIRIEQINRDDLYIV 111
L KEDIAKSDEQDSDKLNFQLYQFITNYD RKPHNEKIRIEQI RDDLYIV
Sbjct: 61 LPKEDIAKSDEQDSDKLNFQLYQFITNYDERKPHNEKIRIEQIKRDDLYIV 111
>ref|NP_077921.1| (NC_002162) conserved hypothetical [Ureaplasma urealyticum]
pir||B82936 conserved hypothetical UU090 [imported] - Ureaplasma urealyticum
gb|AAF30496.1|AE002108_9 (AE002108) conserved hypothetical [Ureaplasma urealyticum]
Length = 584
Score = 63.9 bits (154), Expect = 3e-10
Identities = 40/95 (42%), Positives = 52/95 (54%), Gaps = 12/95 (12%)
Query: 17 NVRYFLPDIQREYVWLKKADEKKIEQLFDSILRGYPIGSFLFWKLQKEDIAKSDEQDSDK 76
N LPDIQREYVW D IE+LF+SI+ YP+GS +FWK K+ + +DE+ +
Sbjct: 36 NRNMLLPDIQREYVW----DTTDIEKLFESIVDDYPVGSCIFWKTNKKVL--NDEKPN-- 87
Query: 77 LNFQLYQFITNYDVRKPHNEKIRIEQINRDDLYIV 111
LY FI+ Y NEK + D YIV
Sbjct: 88 ----LYYFISKYKQGVTKNEKAPEFVSDETDYYIV 118
>ref|NP_281230.1| (NC_002163) hypothetical protein Cj0008 [Campylobacter jejuni]
pir||C81416 hypothetical protein Cj0008 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72501.1| (AL139074) hypothetical protein Cj0008 [Campylobacter jejuni]
Length = 583
Score = 62.0 bits (149), Expect = 1e-09
Identities = 36/96 (37%), Positives = 50/96 (51%), Gaps = 17/96 (17%)
Query: 17 NVRYFLPDIQREYVWLKKADEKKIEQLFDSILRGYPIGSFLFWKLQKEDIAKSDEQDSDK 76
N Y LP QREYVW + +IE+LFDS++RGYPI S LFWK+ +D K
Sbjct: 19 NNEYLLPAFQREYVW----EPWQIEELFDSLIRGYPISSMLFWKV----------KDESK 64
Query: 77 LNFQLYQFITNY-DVRKPHNEKIRIEQINRDDLYIV 111
++ Y+F+ Y + HN+ N D Y +
Sbjct: 65 TAWKFYRFLEYYRESYHTHNDYFNTS--NHKDFYAI 98
>ref|NP_579044.1| (NC_003413) hypothetical protein [Pyrococcus furiosus DSM 3638]
gb|AAL81439.1| (AE010237) hypothetical protein [Pyrococcus furiosus DSM 3638]
Length = 85
Score = 57.8 bits (138), Expect = 2e-08
Identities = 26/51 (50%), Positives = 33/51 (63%), Gaps = 4/51 (7%)
Query: 20 YFLPDIQREYVWLKKADEKKIEQLFDSILRGYPIGSFLFWKLQKEDIAKSD 70
Y+LP QR+YVW DE I+ + DSI+ GYPIGS LFWK +E+ D
Sbjct: 16 YYLPAFQRDYVW----DEDDIKSMIDSIIHGYPIGSTLFWKPSREEFITDD 62
>ref|NP_228799.1| (NC_000853) hypothetical protein [Thermotoga maritima]
pir||E72308 hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD36070.1|AE001761_2 (AE001761) hypothetical protein [Thermotoga maritima]
Length = 584
Score = 50.8 bits (120), Expect = 3e-06
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 4/39 (10%)
Query: 22 LPDIQREYVWLKKADEKKIEQLFDSILRGYPIGSFLFWK 60
LPDIQR +VW D ++ LFDS+ RGYPIG+ LFW+
Sbjct: 27 LPDIQRPFVW----DTTRVRDLFDSMYRGYPIGTLLFWE 61
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.321 0.142 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,194,633
Number of Sequences: 1026957
Number of extensions: 2704367
Number of successful extensions: 6533
Number of sequences better than 1.0e-02: 6
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6524
Number of HSP's gapped (non-prelim): 6
length of query: 115
length of database: 324,149,939
effective HSP length: 91
effective length of query: 24
effective length of database: 230,696,852
effective search space: 5536724448
effective search space used: 5536724448
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 90 (39.3 bits)