BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644725|ref|NP_206895.1| hypothetical protein
[Helicobacter pylori 26695]
         (176 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_206895.1|  (NC_000915) hypothetical protein [Helicoba...   345  2e-94
ref|NP_222808.1|  (NC_000921) putative [Helicobacter pylori ...   331  3e-90

>ref|NP_206895.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||G64531 hypothetical protein HP0095 - Helicobacter pylori (strain 26695)
 gb|AAD07170.1| (AE000531) H. pylori predicted coding region HP0095 [Helicobacter
           pylori 26695]
          Length = 176

 Score =  345 bits (884), Expect = 2e-94
 Identities = 176/176 (100%), Positives = 176/176 (100%)

Query: 1   MPKPKKNTLPCSLSVKMSYFMRFLIKWRTRSLSHKMMTLIQILSILALASKASEDLEEQL 60
           MPKPKKNTLPCSLSVKMSYFMRFLIKWRTRSLSHKMMTLIQILSILALASKASEDLEEQL
Sbjct: 1   MPKPKKNTLPCSLSVKMSYFMRFLIKWRTRSLSHKMMTLIQILSILALASKASEDLEEQL 60

Query: 61  KKIKDYIYRTLNAKIASDVYNRVLILVNEYCTNEELFDKESVKISDLLIQDIQLYALVDE 120
           KKIKDYIYRTLNAKIASDVYNRVLILVNEYCTNEELFDKESVKISDLLIQDIQLYALVDE
Sbjct: 61  KKIKDYIYRTLNAKIASDVYNRVLILVNEYCTNEELFDKESVKISDLLIQDIQLYALVDE 120

Query: 121 MLKEDKYQVQHTILKGIIKRKYDEAYSLNSEDRILLEYQERLLEHSHASFSNKKFK 176
           MLKEDKYQVQHTILKGIIKRKYDEAYSLNSEDRILLEYQERLLEHSHASFSNKKFK
Sbjct: 121 MLKEDKYQVQHTILKGIIKRKYDEAYSLNSEDRILLEYQERLLEHSHASFSNKKFK 176



>ref|NP_222808.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||F71974 hypothetical protein jhp0087 - Helicobacter pylori (strain J99)
 gb|AAD05668.1| (AE001448) putative [Helicobacter pylori J99]
          Length = 176

 Score =  331 bits (848), Expect = 3e-90
 Identities = 169/176 (96%), Positives = 173/176 (98%)

Query: 1   MPKPKKNTLPCSLSVKMSYFMRFLIKWRTRSLSHKMMTLIQILSILALASKASEDLEEQL 60
           MPKPKKNTLPCSLSVKMSYFMR LIKWRTRSLSHKMMTL+QILSILALASKASEDLEEQL
Sbjct: 1   MPKPKKNTLPCSLSVKMSYFMRLLIKWRTRSLSHKMMTLVQILSILALASKASEDLEEQL 60

Query: 61  KKIKDYIYRTLNAKIASDVYNRVLILVNEYCTNEELFDKESVKISDLLIQDIQLYALVDE 120
           KKIKDYIY+TLNAKIASDVY+RVLILVNEYC NEELFDKESVKISDLLIQDIQLYALVDE
Sbjct: 61  KKIKDYIYKTLNAKIASDVYDRVLILVNEYCANEELFDKESVKISDLLIQDIQLYALVDE 120

Query: 121 MLKEDKYQVQHTILKGIIKRKYDEAYSLNSEDRILLEYQERLLEHSHASFSNKKFK 176
           MLKEDKYQVQHTILKGIIKRKYDEAYSLNSEDRILLEYQERLLE S+ASFSNKKFK
Sbjct: 121 MLKEDKYQVQHTILKGIIKRKYDEAYSLNSEDRILLEYQERLLEPSYASFSNKKFK 176



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.319    0.134    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,989,100
Number of Sequences: 1026957
Number of extensions: 3444398
Number of successful extensions: 12120
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12118
Number of HSP's gapped (non-prelim): 2
length of query: 176
length of database: 324,149,939
effective HSP length: 113
effective length of query: 63
effective length of database: 208,103,798
effective search space: 13110539274
effective search space used: 13110539274
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 93 (40.4 bits)