BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645563|ref|NP_207739.1| hypothetical protein
[Helicobacter pylori 26695]
         (120 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207739.1|  (NC_000915) hypothetical protein [Helicoba...   244  1e-64
ref|NP_223599.1|  (NC_000921) putative [Helicobacter pylori ...   226  4e-59

>ref|NP_207739.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||C64638 hypothetical protein HP0947 - Helicobacter pylori (strain 26695)
 gb|AAD08004.1| (AE000604) H. pylori predicted coding region HP0947 [Helicobacter
           pylori 26695]
          Length = 120

 Score =  244 bits (624), Expect = 1e-64
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   MLSVLSGDDLKLYSKLSVYSAGSGMIGIDIDKRTFYKRAFAFTMKSLFGENLLLFVKLKH 60
           MLSVLSGDDLKLYSKLSVYSAGSGMIGIDIDKRTFYKRAFAFTMKSLFGENLLLFVKLKH
Sbjct: 1   MLSVLSGDDLKLYSKLSVYSAGSGMIGIDIDKRTFYKRAFAFTMKSLFGENLLLFVKLKH 60

Query: 61  SALTSKHMKGPLENRHHHSFTKNYEKAVNGCQKYFHIKLPEGAPSNFKSGSYMATMVVRF 120
           SALTSKHMKGPLENRHHHSFTKNYEKAVNGCQKYFHIKLPEGAPSNFKSGSYMATMVVRF
Sbjct: 61  SALTSKHMKGPLENRHHHSFTKNYEKAVNGCQKYFHIKLPEGAPSNFKSGSYMATMVVRF 120



>ref|NP_223599.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||B71875 hypothetical protein jhp0881 - Helicobacter pylori (strain J99)
 gb|AAD06465.1| (AE001518) putative [Helicobacter pylori J99]
          Length = 120

 Score =  226 bits (576), Expect = 4e-59
 Identities = 110/120 (91%), Positives = 115/120 (95%)

Query: 1   MLSVLSGDDLKLYSKLSVYSAGSGMIGIDIDKRTFYKRAFAFTMKSLFGENLLLFVKLKH 60
           MLSVL+GDDL+LYSK  VYSAGSG+IGIDIDKRTFYKRAFAFTMKSLFGENLLLFVKLKH
Sbjct: 1   MLSVLNGDDLRLYSKPLVYSAGSGIIGIDIDKRTFYKRAFAFTMKSLFGENLLLFVKLKH 60

Query: 61  SALTSKHMKGPLENRHHHSFTKNYEKAVNGCQKYFHIKLPEGAPSNFKSGSYMATMVVRF 120
           SAL SKHMKGPLENRHHHSF KNYEKAVNGCQKY HIKLPEGAPSNF+SGSYMATMV+RF
Sbjct: 61  SALMSKHMKGPLENRHHHSFAKNYEKAVNGCQKYVHIKLPEGAPSNFQSGSYMATMVMRF 120



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.322    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,258,200
Number of Sequences: 1026957
Number of extensions: 2650211
Number of successful extensions: 4874
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4872
Number of HSP's gapped (non-prelim): 2
length of query: 120
length of database: 324,149,939
effective HSP length: 96
effective length of query: 24
effective length of database: 225,562,067
effective search space: 5413489608
effective search space used: 5413489608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 90 (39.3 bits)