BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645564|ref|NP_207740.1| hypothetical protein
[Helicobacter pylori 26695]
(337 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207740.1| (NC_000915) hypothetical protein [Helicoba... 678 0.0
ref|NP_223600.1| (NC_000921) putative [Helicobacter pylori ... 669 0.0
ref|NP_281335.1| (NC_002163) putative membrane protein [Cam... 77 3e-13
>ref|NP_207740.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64638 hypothetical protein HP0948 - Helicobacter pylori (strain 26695)
gb|AAD08005.1| (AE000604) H. pylori predicted coding region HP0948 [Helicobacter
pylori 26695]
Length = 337
Score = 678 bits (1749), Expect = 0.0
Identities = 337/337 (100%), Positives = 337/337 (100%)
Query: 1 MRFYIIFTFLFIVGFGVFVYSIDPQAYAFNLGSYSFNLPIAVWLMGVLGMFAFFSWVFLF 60
MRFYIIFTFLFIVGFGVFVYSIDPQAYAFNLGSYSFNLPIAVWLMGVLGMFAFFSWVFLF
Sbjct: 1 MRFYIIFTFLFIVGFGVFVYSIDPQAYAFNLGSYSFNLPIAVWLMGVLGMFAFFSWVFLF 60
Query: 61 KHNLSHKIRLYHEKRDFDKLLKQILSQDTQKTFLKTKFKSDLAKNLSQILARYDLKADLN 120
KHNLSHKIRLYHEKRDFDKLLKQILSQDTQKTFLKTKFKSDLAKNLSQILARYDLKADLN
Sbjct: 61 KHNLSHKIRLYHEKRDFDKLLKQILSQDTQKTFLKTKFKSDLAKNLSQILARYDLKADLN 120
Query: 121 TPNSGCEKVDNLFKHYHNIENNTLEPKDHAKHSLAYEHAYFSKRLKAFIHNDLKNAFEVL 180
TPNSGCEKVDNLFKHYHNIENNTLEPKDHAKHSLAYEHAYFSKRLKAFIHNDLKNAFEVL
Sbjct: 121 TPNSGCEKVDNLFKHYHNIENNTLEPKDHAKHSLAYEHAYFSKRLKAFIHNDLKNAFEVL 180
Query: 181 TNAQIPLELRRYAFIEIAQKGNKKEVLKALNAMQENLDKECVKSFLKAFFEKSLNTDTLK 240
TNAQIPLELRRYAFIEIAQKGNKKEVLKALNAMQENLDKECVKSFLKAFFEKSLNTDTLK
Sbjct: 181 TNAQIPLELRRYAFIEIAQKGNKKEVLKALNAMQENLDKECVKSFLKAFFEKSLNTDTLK 240
Query: 241 ISELCKKVGYDKNDYLKLAQKAQKFLVPDQWFQFFEILSQEDDKAQKAFLFVLLELEMND 300
ISELCKKVGYDKNDYLKLAQKAQKFLVPDQWFQFFEILSQEDDKAQKAFLFVLLELEMND
Sbjct: 241 ISELCKKVGYDKNDYLKLAQKAQKFLVPDQWFQFFEILSQEDDKAQKAFLFVLLELEMND 300
Query: 301 LAKEHLAVLSFEEYMLLNAYMDLKQEHKKAYKLEAFL 337
LAKEHLAVLSFEEYMLLNAYMDLKQEHKKAYKLEAFL
Sbjct: 301 LAKEHLAVLSFEEYMLLNAYMDLKQEHKKAYKLEAFL 337
>ref|NP_223600.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71875 hypothetical protein jhp0882 - Helicobacter pylori (strain J99)
gb|AAD06466.1| (AE001518) putative [Helicobacter pylori J99]
Length = 337
Score = 669 bits (1725), Expect = 0.0
Identities = 331/337 (98%), Positives = 337/337 (99%)
Query: 1 MRFYIIFTFLFIVGFGVFVYSIDPQAYAFNLGSYSFNLPIAVWLMGVLGMFAFFSWVFLF 60
MRFYIIFTFLFIVGFGVFVYSIDPQAYAFNLGSYSFNLPIAVWLMGVLGMFAFFSWVFLF
Sbjct: 1 MRFYIIFTFLFIVGFGVFVYSIDPQAYAFNLGSYSFNLPIAVWLMGVLGMFAFFSWVFLF 60
Query: 61 KHNLSHKIRLYHEKRDFDKLLKQILSQDTQKTFLKTKFKSDLAKNLSQILARYDLKADLN 120
KHNLSHKIRLYHEK+DFDKLLKQILSQDTQKTFLKTKFKSDLAKNLSQILARYDLKADLN
Sbjct: 61 KHNLSHKIRLYHEKKDFDKLLKQILSQDTQKTFLKTKFKSDLAKNLSQILARYDLKADLN 120
Query: 121 TPNSGCEKVDNLFKHYHNIENNTLEPKDHAKHSLAYEHAYFSKRLKAFIHNDLKNAFEVL 180
TPNSGCEKVDNLFKHYHNIENNTLEPKDHAKHSLAYEHAYFSKRLKAFIHNDLKNAFEVL
Sbjct: 121 TPNSGCEKVDNLFKHYHNIENNTLEPKDHAKHSLAYEHAYFSKRLKAFIHNDLKNAFEVL 180
Query: 181 TNAQIPLELRRYAFIEIAQKGNKKEVLKALNAMQENLDKECVKSFLKAFFEKSLNTDTLK 240
TNAQIPLELRRYAFIEIAQKG+KKEVLKA+NAMQE+LDKECVK+FLKAFFEKSLNTDTLK
Sbjct: 181 TNAQIPLELRRYAFIEIAQKGSKKEVLKAVNAMQEDLDKECVKAFLKAFFEKSLNTDTLK 240
Query: 241 ISELCKKVGYDKNDYLKLAQKAQKFLVPDQWFQFFEILSQEDDKAQKAFLFVLLELEMND 300
ISELCKKVGYDK+DYLKLAQKAQKFLVPDQWFQFFEILSQEDDKAQKAFLFVLLELEMND
Sbjct: 241 ISELCKKVGYDKDDYLKLAQKAQKFLVPDQWFQFFEILSQEDDKAQKAFLFVLLELEMND 300
Query: 301 LAKEHLAVLSFEEYMLLNAYMDLKQEHKKAYKLEAFL 337
LAKEHLAVLSFEEYMLLNAYMDLKQEHKKAYKLEAFL
Sbjct: 301 LAKEHLAVLSFEEYMLLNAYMDLKQEHKKAYKLEAFL 337
>ref|NP_281335.1| (NC_002163) putative membrane protein [Campylobacter jejuni]
pir||D81429 probable membrane protein Cj0124c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72608.1| (AL139074) putative membrane protein [Campylobacter jejuni]
Length = 328
Score = 77.0 bits (188), Expect = 3e-13
Identities = 66/311 (21%), Positives = 141/311 (45%), Gaps = 20/311 (6%)
Query: 1 MRFYIIFTFLFIVGFGVFVYSIDPQAYAFNLGSYSFNLPIAVWLMGVLGMFAFFSWVFLF 60
++ +++ +F++I F + ++ +Y N+ +Y+F LPI +WL+ L ++ + + +
Sbjct: 3 IKLFLLASFIYIALIFAFAWHLELGSYTLNISTYTFELPIMIWLVIPLFIYMILAVLHIA 62
Query: 61 KHNLSHKIRLYHEKRD---FDKLLKQILSQDTQKTFLKTKFKSDLAKNLSQILARYDLKA 117
+ ++ H +D F+ + +L + KT +TK +A+ L + + ++
Sbjct: 63 FYGFLRYLKFKHFFKDAAKFEAYTQDLLLEKDLKTTFQTKEFRSVAQ-LFKTIKTHEKIP 121
Query: 118 DLNTPNSGCEKVDNLFKH-YHNIENNTLEPKDHAKHSLAYEHAYFSKRLKAFIHNDLKNA 176
N N + +D L K+ + N+ +K L + + + K + ND A
Sbjct: 122 HSNKINEILDLIDGLNKNEFFNL----------SKFKLENNNVLYLQNEKNHLKNDANYA 171
Query: 177 FEVLTNA-QIPLELRRYAFIEIAQKGNKKEVLKALNAMQENLDKECVKSFLKAFFEKSLN 235
+ L N +I E AF + +K + +++ K + ++ + V + +K F E +L
Sbjct: 172 YNKLKNLNEIKDEFEEIAFNTLIEKASYEQI-KNVKIPKKPSE---VLTLIKRFKEGNLE 227
Query: 236 TDTLKISELCKKVGYDKNDYLKLAQKAQKFLVPDQWFQFFEILSQEDDKAQKAFLFVLLE 295
+ L + DYL A+ + K L PD F + E +A +A+L++L E
Sbjct: 228 LSVAEYEVLLSHNILSEKDYLNAAKLSTKLLNPDAILGIFNKIKNEKSEALRAYLYLLAE 287
Query: 296 LEMNDLAKEHL 306
+ D +E +
Sbjct: 288 FGLLDELREQI 298
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.324 0.139 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,565,760
Number of Sequences: 1026957
Number of extensions: 8455909
Number of successful extensions: 32836
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 32832
Number of HSP's gapped (non-prelim): 3
length of query: 337
length of database: 324,149,939
effective HSP length: 122
effective length of query: 215
effective length of database: 198,861,185
effective search space: 42755154775
effective search space used: 42755154775
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 97 (42.0 bits)