BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645565|ref|NP_207741.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(150 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207741.1| (NC_000915) conserved hypothetical secrete... 307 2e-83
ref|NP_223601.1| (NC_000921) putative [Helicobacter pylori ... 293 3e-79
ref|NP_281337.1| (NC_002163) hypothetical protein Cj0126c [... 85 3e-16
ref|NP_563516.1| (NC_003366) conserved hypothetical protein... 62 1e-09
ref|NP_078012.1| (NC_002162) hypothetical [Ureaplasma ureal... 60 5e-09
ref|NP_326085.1| (NC_002771) conserved hypothetical protein... 55 2e-07
ref|NP_297628.1| (NC_002488) conserved hypothetical protein... 55 3e-07
ref|NP_228653.1| (NC_000853) conserved hypothetical protein... 53 8e-07
emb|CAA12121.1| (AJ224767) hypothetical protein [Acinetobac... 53 1e-06
ref|NP_608180.1| (NC_003485) conserved hypothetical protein... 52 2e-06
ref|NP_270118.1| (NC_002737) conserved hypothetical protein... 52 2e-06
ref|NP_230598.1| (NC_002505) conserved hypothetical protein... 51 3e-06
ref|NP_252693.1| (NC_002516) conserved hypothetical protein... 51 3e-06
ref|NP_350121.1| (NC_003030) Uncharacterized conserved prot... 50 7e-06
dbj|BAB83497.1| (AB063171) open reading frame X [Staphyloco... 50 9e-06
ref|NP_643084.1| (NC_003919) conserved hypothetical protein... 49 2e-05
ref|NP_391903.1| (NC_000964) similar to hypothetical protei... 48 3e-05
ref|NP_637961.1| (NC_003902) conserved hypothetical protein... 48 4e-05
gb|AAL26648.1| (U10927) unknown [Staphylococcus aureus] 47 5e-05
ref|NP_246862.1| (NC_002663) unknown [Pasteurella multocida... 47 5e-05
ref|NP_438206.1| (NC_000907) conserved hypothetical protein... 47 5e-05
ref|NP_370548.1| (NC_002758) conserved hypothetical protein... 47 5e-05
ref|NP_644839.1| (NC_003923) conserved hypothetical protein... 47 5e-05
ref|NP_275014.1| (NC_003112) conserved hypothetical protein... 47 5e-05
ref|NP_294342.1| (NC_001263) conserved hypothetical protein... 47 5e-05
ref|NP_387270.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 47 5e-05
ref|NP_346645.1| (NC_003028) conserved hypothetical protein... 46 1e-04
ref|NP_244875.1| (NC_002570) BH4007~unknown conserved prote... 46 1e-04
ref|NP_406131.1| (NC_003143) conserved hypothetical protein... 46 1e-04
ref|NP_286362.1| (NC_002655) orf, hypothetical protein [Esc... 46 1e-04
ref|NP_455217.1| (NC_003198) conserved hypothetical protein... 46 1e-04
ref|NP_463824.1| (NC_003210) conserved hypothetical protein... 45 2e-04
ref|NP_355706.1| (NC_003062) AGR_C_5037p [Agrobacterium tum... 45 2e-04
ref|NP_653926.1| (NC_003995) DUF163, Uncharacterized ACR, C... 45 2e-04
ref|NP_539129.1| (NC_003317) Hypothetical Cytosolic Protein... 45 2e-04
ref|NP_469666.1| (NC_003212) conserved hypothetical protein... 45 3e-04
ref|NP_603360.1| (NC_003454) Hypothetical cytosolic protein... 44 4e-04
gb|AAC44439.1| (U33315) orfL [Streptococcus pneumoniae] 44 5e-04
ref|NP_196624.1| (NM_121100) putative protein [Arabidopsis ... 42 0.003
ref|NP_422227.1| (NC_002696) conserved hypothetical protein... 42 0.003
ref|NP_624195.1| (NC_003869) conserved hypothetical protein... 41 0.004
ref|NP_520316.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN... 40 0.006
gb|AAC96105.1| (AF074396) unknown [Desulfotomaculum thermoc... 40 0.007
>ref|NP_207741.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||E64638 conserved hypothetical secreted protein HP0949 - Helicobacter
pylori (strain 26695)
gb|AAD07994.1| (AE000604) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 150
Score = 307 bits (786), Expect = 2e-83
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MRCVVYSIAKSSPLELVKIYQKQCRQFDCELELVDLFPKNTANAQKVSKKLAQKSYSLAF 60
MRCVVYSIAKSSPLELVKIYQKQCRQFDCELELVDLFPKNTANAQKVSKKLAQKSYSLAF
Sbjct: 1 MRCVVYSIAKSSPLELVKIYQKQCRQFDCELELVDLFPKNTANAQKVSKKLAQKSYSLAF 60
Query: 61 EPYLNPKAKNIALHPKAQRGDSFAFSKMLENHLNINFFIAGAYGFEENFLKDCQAWSLSE 120
EPYLNPKAKNIALHPKAQRGDSFAFSKMLENHLNINFFIAGAYGFEENFLKDCQAWSLSE
Sbjct: 61 EPYLNPKAKNIALHPKAQRGDSFAFSKMLENHLNINFFIAGAYGFEENFLKDCQAWSLSE 120
Query: 121 MTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
MTFSHEVAKIVLCEQIYRALSIIFKHPYHK
Sbjct: 121 MTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
>ref|NP_223601.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71875 hypothetical protein jhp0883 - Helicobacter pylori (strain J99)
gb|AAD06467.1| (AE001518) putative [Helicobacter pylori J99]
Length = 150
Score = 293 bits (751), Expect = 3e-79
Identities = 142/150 (94%), Positives = 148/150 (98%)
Query: 1 MRCVVYSIAKSSPLELVKIYQKQCRQFDCELELVDLFPKNTANAQKVSKKLAQKSYSLAF 60
MRCVVYSIAK+SPLELVK YQKQC++FDCELELVDLFPKNTANAQKVSK+LAQKSYSLAF
Sbjct: 1 MRCVVYSIAKNSPLELVKSYQKQCKRFDCELELVDLFPKNTANAQKVSKELAQKSYSLAF 60
Query: 61 EPYLNPKAKNIALHPKAQRGDSFAFSKMLENHLNINFFIAGAYGFEENFLKDCQAWSLSE 120
EPYL+PKAKNIALHP+AQRGDSFAFSKMLENHLNINFFIAGAYGFEE FLKDCQAWSLSE
Sbjct: 61 EPYLSPKAKNIALHPEAQRGDSFAFSKMLENHLNINFFIAGAYGFEEKFLKDCQAWSLSE 120
Query: 121 MTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
MTFSHEVAKIVLCEQIYRALSIIFKHPYHK
Sbjct: 121 MTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
>ref|NP_281337.1| (NC_002163) hypothetical protein Cj0126c [Campylobacter jejuni]
pir||F81429 hypothetical protein Cj0126c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72610.1| (AL139074) hypothetical protein Cj0126c [Campylobacter jejuni]
Length = 153
Score = 84.7 bits (208), Expect = 3e-16
Identities = 50/121 (41%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 31 LELVDLFPKNTANAQKVSKKLAQKSYSLAFEPYLNPKAKNIALHPKAQRGDSFAFSKMLE 90
L+ +++F K A AQ ++ A+KSY AF PY K IAL K + S F+K+++
Sbjct: 35 LKEINVFNKKIALAQNLNAIEAKKSYEEAFMPY--KKGYCIALDEKGKDLTSIEFAKLIQ 92
Query: 91 NHLNINFFIAGAYGFEENFLKDCQ-AWSLSEMTFSHEVAKIVLCEQIYRALSIIFKHPYH 149
+ ++FFI GAYG E F + SLS++T +H+ K +L EQIYRA I HPYH
Sbjct: 93 DKNELSFFIGGAYGLREEFNQSLDFRLSLSKLTLAHQFVKTLLLEQIYRAFCINNNHPYH 152
Query: 150 K 150
K
Sbjct: 153 K 153
>ref|NP_563516.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB82306.1| (AP003194) conserved hypothetical protein [Clostridium perfringens]
Length = 159
Score = 62.4 bits (150), Expect = 1e-09
Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 13/161 (8%)
Query: 1 MRCVVYSIAKSSPLEL---VKIYQKQCRQFDCELELVDLFPKNTAN--AQKVSKKLAQKS 55
M V S+ K L + Y K+ ++ C+LE+++L + T + ++K ++ +K
Sbjct: 1 MNITVISVGKLKEKYLKQAIDEYSKRLSRY-CKLEIIELPDEKTPDNASEKEELQIKEKE 59
Query: 56 YSLAFEPYLNPKAKNIALHPKAQRGDSFAFSKMLEN-----HLNINFFIAGAYGFEENFL 110
L + IA+ K S FSK +EN + NI F I G+ G + +
Sbjct: 60 GKLILSK-IKDNMHVIAMDLKGNEITSEKFSKYIENCGVMGNSNITFVIGGSLGLSQEVI 118
Query: 111 KDCQ-AWSLSEMTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
K S+MTF H++ +++L EQ+YRA I+ PYHK
Sbjct: 119 KRADYKLCFSKMTFPHQLFRVMLLEQVYRAFRIMKNEPYHK 159
>ref|NP_078012.1| (NC_002162) hypothetical [Ureaplasma urealyticum]
pir||G82924 hypothetical UU180 [imported] - Ureaplasma urealyticum
gb|AAF30587.1|AE002117_11 (AE002117) hypothetical [Ureaplasma urealyticum]
Length = 159
Score = 60.5 bits (145), Expect = 5e-09
Identities = 46/144 (31%), Positives = 75/144 (51%), Gaps = 8/144 (5%)
Query: 14 LELVKIYQKQCRQF-DCELELVDLFPKNTANAQKVSKKLAQKSYSLAFEPYLNPKAKNIA 72
++L+ Y K+ + C+ +V P+ + K +++ K S F+ +N IA
Sbjct: 17 VDLINDYLKRINHYLKCQEIVVSDEPEPVQISNKSLEQIKSKEASKIFKN-INQNDFVIA 75
Query: 73 LHPKAQRGDSFAFSKMLENHLN-----INFFIAGAYGFEENFLKDCQAW-SLSEMTFSHE 126
L ++ S +K ++ LN I F I G+ G E+ + S+S+MTF+H
Sbjct: 76 LIIESNIISSETLAKKIQQWLNTFSHDICFIIGGSNGLHESIYERANYHLSMSKMTFAHG 135
Query: 127 VAKIVLCEQIYRALSIIFKHPYHK 150
+AK++LCEQIYRALSI+ YHK
Sbjct: 136 LAKVMLCEQIYRALSILNNGKYHK 159
>ref|NP_326085.1| (NC_002771) conserved hypothetical protein [Mycoplasma pulmonis]
emb|CAC13427.1| (AL445563) conserved hypothetical protein [Mycoplasma pulmonis]
Length = 152
Score = 55.1 bits (131), Expect = 2e-07
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 48 SKKLAQKSYSLAFEPYLNPKAKNIALHPKAQRGDSFAFSKMLENHLNINFFIAGAYGFEE 107
+K L K+ ++A + +K A++ S F+ L+ NI+F I G++G +E
Sbjct: 51 NKDLIIKNETMAILEKIPKNSKVFLCSLNAEQYSSEKFALFLQED-NISFVIGGSHGVDE 109
Query: 108 NFLKDCQAWSLSEMTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
K + S+MTF H++ ++L EQIYR SI+ YHK
Sbjct: 110 KMFKGAWKINFSKMTFPHQLFHLMLIEQIYRGFSILNNKIYHK 152
>ref|NP_297628.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||E82818 conserved hypothetical protein XF0338 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF83148.1|AE003886_7 (AE003886) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 158
Score = 54.7 bits (130), Expect = 3e-07
Identities = 40/161 (24%), Positives = 77/161 (46%), Gaps = 17/161 (10%)
Query: 1 MRCVVYSIAKSSPLELVKIYQKQCRQFD--CELELVDLFP----KNTANAQKVSKKLAQK 54
M+C++ + + P + + + + ++ LELV++ P KN Q + + +
Sbjct: 2 MKCLLIATGERVPTWVAQGFAEYHKRLSYWLPLELVEIEPSLRGKNHDPQQAIEDEGRRV 61
Query: 55 SYSLAFEPYLNPKAKNIALHPKAQRGDSFAFSKMLENHL----NINFFIAGAYGFEENFL 110
+L +PY + L K + +S +K +E+ N+ F I G G + L
Sbjct: 62 MAALPKQPYA------VTLDVKGKSLNSEQLAKRMEHWRGLGRNLVFLIGGPEGHSQEVL 115
Query: 111 K-DCQAWSLSEMTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
+ WSL +T H + ++++ EQ+YRA +I+ HPYH+
Sbjct: 116 NISNERWSLGPLTLPHMLVRLIVVEQLYRAATILTNHPYHR 156
>ref|NP_228653.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
pir||E72326 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD35926.1|AE001751_6 (AE001751) conserved hypothetical protein [Thermotoga maritima]
Length = 151
Score = 53.1 bits (126), Expect = 8e-07
Identities = 42/142 (29%), Positives = 75/142 (52%), Gaps = 15/142 (10%)
Query: 15 ELVKIYQKQCRQFDCELELVDLFPKNTANAQKVSKK----LAQKSYSLAFEPYLNPKAKN 70
E +K Y+K R+F C+ E++++ + + +++ +K L + +F ++ + +
Sbjct: 17 EGIKHYEKFLRRF-CKPEVLEIKRVHRGSIEEIVRKETEDLTNRILPGSFVMVMDKRGEE 75
Query: 71 IALHPKAQRGDSFA-FSKMLE-NHLNINFFIAGAYGF-EENFLKDCQAWSLSEMTFSHEV 127
++ + FA F K LE +I I G YG EE F K + +SLS+MTF+H +
Sbjct: 76 VS-------SEEFADFLKDLEMKGKDITILIGGPYGLNEEIFAKAHRVFSLSKMTFTHGM 128
Query: 128 AKIVLCEQIYRALSIIFKHPYH 149
+++ EQI+RA II YH
Sbjct: 129 TVLIVLEQIFRAFKIIHGENYH 150
>emb|CAA12121.1| (AJ224767) hypothetical protein [Acinetobacter sp. ADP1]
Length = 159
Score = 52.8 bits (125), Expect = 1e-06
Identities = 29/66 (43%), Positives = 39/66 (58%), Gaps = 2/66 (3%)
Query: 86 SKMLENHLNINFFIAGAYGFEENFLKDCQ-AWSLSEMTFSHEVAKIVLCEQIYRALSIIF 144
S MLE H +I I G G + K WSLS++T H + +I+L EQ+YRA+SI
Sbjct: 94 SWMLEGH-DIALAIGGPDGLSDQVRKAAAWHWSLSKLTMPHPMVRILLIEQLYRAMSINH 152
Query: 145 KHPYHK 150
HPYH+
Sbjct: 153 NHPYHR 158
>ref|NP_608180.1| (NC_003485) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
gb|AAL98679.1| (AE010125) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
Length = 159
Score = 51.6 bits (122), Expect = 2e-06
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 34/151 (22%)
Query: 20 YQKQCRQFDCELELVDLFPKNTAN--------------AQKVSKKLAQKSYSLAFEPYLN 65
YQK+ +F C+ E+++L + T + AQ++ KK+ ++ +
Sbjct: 23 YQKRLSRF-CQFEMIELTDERTPDKANFADNQLIMSKEAQRIHKKIGERDFV-------- 73
Query: 66 PKAKNIALHPKAQRGDSFAFSKML-----ENHLNINFFIAGAYGFEENFLKDCQA-WSLS 119
IAL + ++ S FS+++ + + I F I G+ G + K S
Sbjct: 74 -----IALAIEGKQFPSETFSELISGVTVKGYSTITFIIGGSLGLDSIIKKRADMLMSFG 128
Query: 120 EMTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
+T H++ ++VL EQIYRA I PYHK
Sbjct: 129 LLTLPHQLMRLVLTEQIYRAFMITKGSPYHK 159
>ref|NP_270118.1| (NC_002737) conserved hypothetical protein [Streptococcus pyogenes]
[Streptococcus pyogenes M1 GAS]
gb|AAK34839.1| (AE006638) conserved hypothetical protein [Streptococcus pyogenes
M1 GAS]
Length = 159
Score = 51.6 bits (122), Expect = 2e-06
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 34/151 (22%)
Query: 20 YQKQCRQFDCELELVDLFPKNTAN--------------AQKVSKKLAQKSYSLAFEPYLN 65
YQK+ +F C+ E+++L + T + AQ++ KK+ ++ +
Sbjct: 23 YQKRLSRF-CQFEMIELTDERTPDKASFADNQLIMSKEAQRIHKKIGERDFV-------- 73
Query: 66 PKAKNIALHPKAQRGDSFAFSKML-----ENHLNINFFIAGAYGFEENFLKDCQA-WSLS 119
IAL + ++ S FS+++ + + I F I G+ G + K S
Sbjct: 74 -----IALAIEGKQFPSETFSELISGVTVKGYSTITFIIGGSLGLDSIIKKRANMLMSFG 128
Query: 120 EMTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
+T H++ ++VL EQIYRA I PYHK
Sbjct: 129 LLTLPHQLMRLVLTEQIYRAFMITQGSPYHK 159
>ref|NP_230598.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||B82260 conserved hypothetical protein VC0951 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF94113.1| (AE004177) conserved hypothetical protein [Vibrio cholerae]
Length = 156
Score = 51.2 bits (121), Expect = 3e-06
Identities = 41/158 (25%), Positives = 74/158 (45%), Gaps = 11/158 (6%)
Query: 1 MRCVVYSIAKSSPLELVKIYQKQCRQF--DCELELVDLFPKNTANAQKVSKKLAQKSYS- 57
M+ + ++ P + + +Q+ R+F D LELV++ +++ L ++ +
Sbjct: 1 MKIQLIAVGTKMPKWVEEGFQEYRRRFPHDMPLELVEITAGKRGKNADIARILQKEGEAM 60
Query: 58 LAFEPYLNPKAKNIALHPKAQRGDSFAFSKMLENHLNINFFIAGAYGFEENFLKDC---- 113
LA P N + + L +R D+ + LE+ ++ G E C
Sbjct: 61 LAAVPKGN---RIVTLDIPGKRWDTEELAVQLESWKLDGRDVSILIGGPEGLAPACKAAA 117
Query: 114 -QAWSLSEMTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
Q+WSLS +T H + ++V+ E +YRA SI HPYH+
Sbjct: 118 DQSWSLSPLTLPHPLVRVVMAESLYRAWSITTNHPYHR 155
>ref|NP_252693.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||H83146 conserved hypothetical protein PA4004 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG07391.1|AE004817_15 (AE004817) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 155
Score = 51.2 bits (121), Expect = 3e-06
Identities = 40/158 (25%), Positives = 78/158 (49%), Gaps = 11/158 (6%)
Query: 1 MRCVVYSIAKSSPLELVKIYQKQCRQFDCEL--ELVDLFPKNTANAQK-VSKKLAQKSYS 57
MR + ++ P + + +Q+ ++ EL ELV++ P NT V++ + Q+ +
Sbjct: 1 MRLRLIAVGSRMPRWVEEGWQEYVKRLPAELSLELVEI-PLNTRGKNADVARLIRQEGEA 59
Query: 58 LAFEPYLNPKAKNIALHPKAQRGDSFAFSKMLE----NHLNINFFIAGAYGFE-ENFLKD 112
+ + P + + L + + + ++ L+ + +N + G G E +
Sbjct: 60 MLAR--VQPGERVVTLEVEGRPWSTEQLARELDRWRLDARTVNLMVGGPEGLAPEVCARS 117
Query: 113 CQAWSLSEMTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
Q WSLS +T H + +I++ EQIYRA +++ HPYHK
Sbjct: 118 EQRWSLSPLTLPHPLVRILVGEQIYRAWTVLSGHPYHK 155
>ref|NP_350121.1| (NC_003030) Uncharacterized conserved protein, YbeA family
[Clostridium acetobutylicum]
gb|AAK81461.1|AE007850_2 (AE007850) Uncharacterized conserved protein, YbeA family
[Clostridium acetobutylicum]
Length = 159
Score = 50.1 bits (118), Expect = 7e-06
Identities = 36/143 (25%), Positives = 70/143 (48%), Gaps = 8/143 (5%)
Query: 15 ELVKIYQKQCRQFDCELELVDLFPKNTAN-AQKVSKKLAQKSYSLAFEPYLNPKAKNIAL 73
+ V Y K+ +++ C+L +++L + T A +KL ++ + + +++
Sbjct: 18 DAVNEYAKRLQKY-CKLNIIELQDEKTPEKASLKEEKLIKEKEGEKILSSIKDNSYVVSM 76
Query: 74 HPKAQRGDSFAFSKMLEN-----HLNINFFIAGAYGFEENFLKDCQ-AWSLSEMTFSHEV 127
K + S FS +++ + +I+F I G+ G + L S+MTF H++
Sbjct: 77 DLKGKMFSSEEFSAFIDDLGVRGNSSIDFVIGGSLGLSDAVLARANYKLCFSKMTFPHQL 136
Query: 128 AKIVLCEQIYRALSIIFKHPYHK 150
+++L EQ+YRA I PYHK
Sbjct: 137 FRVMLLEQVYRAFRISRGEPYHK 159
>dbj|BAB83497.1| (AB063171) open reading frame X [Staphylococcus hominis]
Length = 159
Score = 49.7 bits (117), Expect = 9e-06
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 11/112 (9%)
Query: 45 QKVSKKLAQKSYSLAFEPYLNPKAKNIALHPKAQRGDSFAFSKMLENHL-----NINFFI 99
+KV +K Q+ + + P+A I L + + S +K L+ + + F I
Sbjct: 53 EKVKEKEGQRLLA-----QIKPQATVITLEIQGKMLSSEGLAKELQQRMTQGQSDFVFVI 107
Query: 100 AGAYGFEENFL-KDCQAWSLSEMTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
G+ G ++ L + A S S+MTF H++ ++VL EQ+YRA I+ YHK
Sbjct: 108 GGSNGLHQDVLNRSNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRGEAYHK 159
>ref|NP_643084.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM37620.1| (AE011918) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 156
Score = 48.5 bits (114), Expect = 2e-05
Identities = 19/58 (32%), Positives = 35/58 (59%), Gaps = 1/58 (1%)
Query: 94 NINFFIAGAYGFEENFLKDC-QAWSLSEMTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
++ F I G G LK ++WS+ +T H + ++++ EQ+YRA +++ HPYH+
Sbjct: 98 DLAFLIGGPEGHAAEVLKSASESWSIGPLTLPHMLVRLIVAEQLYRAAAMLANHPYHR 155
>ref|NP_391903.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
pir||H70090 conserved hypothetical protein yydA - Bacillus subtilis
dbj|BAA11281.1| (D78193) yydA [Bacillus subtilis]
emb|CAB16060.1| (Z99124) similar to hypothetical proteins [Bacillus subtilis]
Length = 159
Score = 48.1 bits (113), Expect = 3e-05
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 95 INFFIAGAYGFEENFLKDC-QAWSLSEMTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
+ F I G+ G + +K + S S+MTF H++ +++L EQIYRA I PYHK
Sbjct: 103 VTFVIGGSLGLSDTVMKRADEKLSFSKMTFPHQLMRLILVEQIYRAFRINRGEPYHK 159
>ref|NP_637961.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM41885.1| (AE012373) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 156
Score = 47.8 bits (112), Expect = 4e-05
Identities = 18/58 (31%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 94 NINFFIAGAYGFEENFLKDC-QAWSLSEMTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
++ F I G G + +K ++WS+ +T H + ++++ EQ+YRA +++ HPYH+
Sbjct: 98 DLAFLIGGPEGHAADVVKSANESWSIGPLTLPHMLVRLIVAEQLYRAAAMLANHPYHR 155
>gb|AAL26648.1| (U10927) unknown [Staphylococcus aureus]
Length = 159
Score = 47.4 bits (111), Expect = 5e-05
Identities = 24/65 (36%), Positives = 38/65 (57%), Gaps = 1/65 (1%)
Query: 87 KMLENHLNINFFIAGAYGFEENFLKDCQ-AWSLSEMTFSHEVAKIVLCEQIYRALSIIFK 145
+M + + F I G+ G ++ L+ A S S+MTF H++ ++VL EQ+YRA I+
Sbjct: 95 RMTQGQSDFVFVIGGSNGLHKDVLQRSNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRG 154
Query: 146 HPYHK 150
YHK
Sbjct: 155 EAYHK 159
>ref|NP_246862.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK04007.1| (AE006229) unknown [Pasteurella multocida]
Length = 155
Score = 47.4 bits (111), Expect = 5e-05
Identities = 17/37 (45%), Positives = 26/37 (69%)
Query: 114 QAWSLSEMTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
Q+WSLS +T H + ++V+ E +YRA S+ HPYH+
Sbjct: 118 QSWSLSPLTLPHPLVRVVVAESLYRAWSVTMNHPYHR 154
>ref|NP_438206.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P44470|YBEA_HAEIN Hypothetical protein HI0033
pir||G64140 ybeA protein homolog HI0033 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC21711.1| (U32688) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 155
Score = 47.4 bits (111), Expect = 5e-05
Identities = 35/157 (22%), Positives = 68/157 (43%), Gaps = 10/157 (6%)
Query: 1 MRCVVYSIAKSSPLELVKIYQKQCRQF--DCELELVDLFPKNTANAQKVSKKLAQKSYSL 58
M+ + ++ P + +++ R+F D EL+++ + + L Q+ ++
Sbjct: 1 MKITLIAVGTKMPSWVTTGFEEYQRRFPKDMPFELIEIPAGKRGKNADIKRILEQEGKAM 60
Query: 59 AFEPYLNPKAKNIALHPKAQRGDSFAFSKMLENHLNINFFIAGAYGFEENFLKDC----- 113
K K + L + + ++ LE N + G E +C
Sbjct: 61 LAAC---GKGKVVTLDIPGKPWTTPQLAEQLEAWKNDGRDVCLLIGGPEGLSPECKAAAE 117
Query: 114 QAWSLSEMTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
Q+WSLS +T H + ++V+ E +YRA S+ HPYH+
Sbjct: 118 QSWSLSPLTLPHPLVRVVVAESLYRAWSLTTNHPYHR 154
>ref|NP_370548.1| (NC_002758) conserved hypothetical protein orfX [Staphylococcus
aureus subsp. aureus Mu50]
ref|NP_373262.1| (NC_002745) conserved hypothetical protein orfX [Staphylococcus
aureus subsp. aureus N315]
pir||T44141 conserved hypothetical protein orfX [imported] - Staphylococcus
aureus (fragment)
dbj|BAA82243.1| (D86934) orfX [Staphylococcus aureus]
dbj|BAA82252.1| (AB014440) orfX [Staphylococcus aureus]
dbj|BAA86653.1| (AB033763) open reading frame X [Staphylococcus aureus]
gb|AAF85653.1| (AF181950) orfX [Staphylococcus aureus]
dbj|BAB41240.1| (AP003129) conserved hypothetical protein orfX [Staphylococcus
aureus subsp. aureus N315]
dbj|BAB47141.1| (AB047239) open reading frame X [Staphylococcus aureus]
dbj|BAB47681.1| (AB037671) open reading frame X [Staphylococcus aureus]
dbj|BAB56186.1| (AP003358) conserved hypothetical protein orfX [Staphylococcus
aureus subsp. aureus Mu50]
dbj|BAB72121.1| (AB063172) hypothetical protein [Staphylococcus aureus]
dbj|BAB72138.1| (AB063173) open reading frame X [Staphylococcus aureus]
Length = 159
Score = 47.4 bits (111), Expect = 5e-05
Identities = 24/65 (36%), Positives = 38/65 (57%), Gaps = 1/65 (1%)
Query: 87 KMLENHLNINFFIAGAYGFEENFLKDCQ-AWSLSEMTFSHEVAKIVLCEQIYRALSIIFK 145
+M + + F I G+ G ++ L+ A S S+MTF H++ ++VL EQ+YRA I+
Sbjct: 95 RMTQGQSDFVFVIGGSNGLHKDVLQRSNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRG 154
Query: 146 HPYHK 150
YHK
Sbjct: 155 EAYHK 159
>ref|NP_644839.1| (NC_003923) conserved hypothetical protein orfX [Staphylococcus
aureus subsp. aureus MW2]
dbj|BAB93889.1| (AP004822) conserved hypothetical protein orfX [Staphylococcus
aureus subsp. aureus MW2]
Length = 159
Score = 47.4 bits (111), Expect = 5e-05
Identities = 24/65 (36%), Positives = 38/65 (57%), Gaps = 1/65 (1%)
Query: 87 KMLENHLNINFFIAGAYGFEENFLKDCQ-AWSLSEMTFSHEVAKIVLCEQIYRALSIIFK 145
+M + + F I G+ G ++ L+ A S S+MTF H++ ++VL EQ+YRA I+
Sbjct: 95 RMTQGQSDFVFVIGGSNGLHKDVLQRSNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRG 154
Query: 146 HPYHK 150
YHK
Sbjct: 155 EAYHK 159
>ref|NP_275014.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
ref|NP_283245.1| (NC_003116) hypothetical protein NMA0418 [Neisseria meningitidis
Z2491]
pir||A81015 conserved hypothetical protein NMB2022 [imported] - Neisseria
meningitidis (group B strain MD58, group A strain Z2491)
gb|AAF42345.1| (AE002552) conserved hypothetical protein [Neisseria meningitidis
MC58]
emb|CAB83717.1| (AL162753) hypothetical protein NMA0418 [Neisseria meningitidis
Z2491]
Length = 156
Score = 47.4 bits (111), Expect = 5e-05
Identities = 27/86 (31%), Positives = 44/86 (50%), Gaps = 11/86 (12%)
Query: 66 PKAKNIALHPKAQRGDSFAFSKMLENHLNINFFIAGAYGFEENFLKDCQAWS-LSEMTFS 124
P + +A H K+ R +N ++ F I GA G + + + LS +T
Sbjct: 80 PTSVELAEHLKSWR----------QNGEHVCFVIGGADGMTDRLKQQARMMMRLSSLTLP 129
Query: 125 HEVAKIVLCEQIYRALSIIFKHPYHK 150
H + ++ L EQ+YRA+SI+ HPYH+
Sbjct: 130 HGMVRVFLTEQLYRAVSILHNHPYHR 155
>ref|NP_294342.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||H75495 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF10198.1|AE001920_1 (AE001920) conserved hypothetical protein [Deinococcus radiodurans]
Length = 146
Score = 47.4 bits (111), Expect = 5e-05
Identities = 36/125 (28%), Positives = 57/125 (44%), Gaps = 9/125 (7%)
Query: 35 DLFPKNTANAQKVS-KKLAQKSYSLAFEPYLNPKAKN--IALHPKAQRGDSFAFSKMLE- 90
D + K KV +++ K+ E L K+ I L P+ ++ S S+ L+
Sbjct: 21 DEYEKRLRRYHKVQVSRVSGKTQQAESEAILKAAGKSPLILLDPRGKQFSSEKLSEYLDA 80
Query: 91 ----NHLNINFFIAGAYGFEENFLKDCQA-WSLSEMTFSHEVAKIVLCEQIYRALSIIFK 145
H + F I G G + + WSL E+T H++A +VL E +YRA +I
Sbjct: 81 EALGGHGELAFAIGGPDGHTDALRGQAKLLWSLGELTLPHDLAMLVLVEALYRAATISAG 140
Query: 146 HPYHK 150
PYH+
Sbjct: 141 EPYHR 145
>ref|NP_387270.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC47743.1| (AL591793) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 181
Score = 47.4 bits (111), Expect = 5e-05
Identities = 30/116 (25%), Positives = 60/116 (50%), Gaps = 6/116 (5%)
Query: 41 TANAQKVSKKLAQKSYSLAFEPYLNPKAKNIALHPKAQRGDSFAFSKML-----ENHLNI 95
TA ++ + + ++ + E L + + L + + DS AF+++L ++
Sbjct: 65 TAESRAANAETRKREEAGQLEKALADGSLLVLLDERGKALDSEAFARLLGTLRDSGKRDL 124
Query: 96 NFFIAGAYGFEENFLKDCQA-WSLSEMTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
I GA G + A +L +MT+ H++ +I++ EQ+YRA++I+ HPYH+
Sbjct: 125 MIAIGGADGLDPALHARADAVLNLGKMTWPHQLVRILIAEQLYRAVTILSGHPYHR 180
>ref|NP_346645.1| (NC_003028) conserved hypothetical protein [Streptococcus
pneumoniae TIGR4]
ref|NP_359635.1| (NC_003098) Conserved hypothetical protein [Streptococcus
pneumoniae R6]
gb|AAC44894.1| (U76218) unknown [Streptococcus pneumoniae]
gb|AAC45340.1| (AF000658) ORF1 [Streptococcus pneumoniae]
gb|AAK76285.1| (AE007511) conserved hypothetical protein [Streptococcus pneumoniae
TIGR4]
gb|AAL00846.1| (AE008568) Conserved hypothetical protein [Streptococcus pneumoniae
R6]
Length = 159
Score = 46.2 bits (108), Expect = 1e-04
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 12/140 (8%)
Query: 20 YQKQCRQFDCELELVDLFPKNTANAQKVSKKLAQKSYSLAFEPYLNPKAKNIALHPKAQR 79
Y K+ +F + E+++L + T + K S+ QK + + L+ A + A
Sbjct: 23 YSKRISRF-AKFEMIELSDEKTPD--KASESENQKILEIEGQRILSKIADRDFVIVLAIE 79
Query: 80 GDSF---AFSKMLEN-----HLNINFFIAGAYGFEENFLKDCQ-AWSLSEMTFSHEVAKI 130
G +F FSK LE + F I G+ G + + S +T H++ ++
Sbjct: 80 GKTFFSEEFSKQLEETSIKGFSTLTFIIGGSLGLSSSVKNRANLSVSFGRLTLPHQLMRL 139
Query: 131 VLCEQIYRALSIIFKHPYHK 150
VL EQIYRA +I PYHK
Sbjct: 140 VLVEQIYRAFTIQQGFPYHK 159
>ref|NP_244875.1| (NC_002570) BH4007~unknown conserved protein [Bacillus halodurans]
dbj|BAB07726.1| (AP001520) BH4007~unknown conserved protein [Bacillus halodurans]
Length = 159
Score = 46.2 bits (108), Expect = 1e-04
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 95 INFFIAGAYGFEENFLKDC-QAWSLSEMTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
+ F I G+ G + LK + S S+MTF H + +++L EQ+YRA I PYHK
Sbjct: 103 VAFVIGGSLGLSDAVLKRADEKLSFSKMTFPHRLMRLILLEQVYRAFRINRGEPYHK 159
>ref|NP_406131.1| (NC_003143) conserved hypothetical protein [Yersinia pestis]
emb|CAC92848.1| (AJ414153) conserved hypothetical protein [Yersinia pestis]
Length = 156
Score = 45.8 bits (107), Expect = 1e-04
Identities = 17/37 (45%), Positives = 26/37 (69%)
Query: 114 QAWSLSEMTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
Q+WSLS +T H + ++++ E +YRA SI HPYH+
Sbjct: 119 QSWSLSPLTLPHPLVRVLVAESLYRAWSITTNHPYHR 155
>ref|NP_286362.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_308701.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
ref|NP_415169.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P05850|YBEA_ECOLI Hypothetical protein ybeA
pir||QQECP1 ybeA protein - Escherichia coli
emb|CAA28200.1| (X04516) ORF2 (AA 1-155) [Escherichia coli]
gb|AAB40836.1| (U82598) hypothetical protein [Escherichia coli]
gb|AAC73737.1| (AE000168) orf, hypothetical protein [Escherichia coli K12]
dbj|BAA35283.1| (D90704) Hypothetical 17k protein (pbpA 5' region) [Escherichia
coli]
gb|AAG54970.1|AE005242_14 (AE005242) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB34097.1| (AP002552) hypothetical protein [Escherichia coli O157:H7]
Length = 155
Score = 45.8 bits (107), Expect = 1e-04
Identities = 17/37 (45%), Positives = 26/37 (69%)
Query: 114 QAWSLSEMTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
Q+WSLS +T H + ++++ E +YRA SI HPYH+
Sbjct: 118 QSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYHR 154
>ref|NP_455217.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
ref|NP_459633.1| (NC_003197) putative cytoplasmic protein [Salmonella typhimurium
LT2]
gb|AAL19592.1| (AE008725) putative cytoplasmic protein [Salmonella typhimurium
LT2]
emb|CAD05118.1| (AL627267) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 155
Score = 45.8 bits (107), Expect = 1e-04
Identities = 17/37 (45%), Positives = 26/37 (69%)
Query: 114 QAWSLSEMTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
Q+WSLS +T H + ++++ E +YRA SI HPYH+
Sbjct: 118 QSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYHR 154
>ref|NP_463824.1| (NC_003210) conserved hypothetical protein, highly similar to B.
subtilis YydA proteinYyd [Listeria monocytogenes EGD-e]
emb|CAD00820.1| (AL591974) conserved hypothetical protein, highly similar to B.
subtilis YydA proteinYyd [Listeria monocytogenes]
Length = 159
Score = 45.4 bits (106), Expect = 2e-04
Identities = 22/57 (38%), Positives = 32/57 (55%), Gaps = 1/57 (1%)
Query: 95 INFFIAGAYGFEENFLKDC-QAWSLSEMTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
+ F I G+ G E LK + S +T H++ ++VL EQ+YRA I+ PYHK
Sbjct: 103 VTFVIGGSLGLSEAVLKRSNERISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYHK 159
>ref|NP_355706.1| (NC_003062) AGR_C_5037p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_533441.1| (NC_003304) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK88491.1| (AE008191) AGR_C_5037p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL43757.1| (AE009225) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 160
Score = 45.4 bits (106), Expect = 2e-04
Identities = 27/96 (28%), Positives = 50/96 (51%), Gaps = 6/96 (6%)
Query: 61 EPYLNPKAKNIALHPKAQRGDSFAFSKML-----ENHLNINFFIAGAYGFEENFLKDCQA 115
E +L A + L + + DS AF+ + ++ I GA G + A
Sbjct: 64 EKHLADGAVLVLLDERGKALDSPAFASLFGDLRDSGKRDLVIAIGGADGLDSALYDKATA 123
Query: 116 -WSLSEMTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
+L ++T+ H++ +I++ EQ+YRA++I+ HPYH+
Sbjct: 124 VLNLGKLTWPHQIVRILIAEQLYRAVTILSGHPYHR 159
>ref|NP_653926.1| (NC_003995) DUF163, Uncharacterized ACR, COG1576 [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 159
Score = 45.4 bits (106), Expect = 2e-04
Identities = 27/84 (32%), Positives = 42/84 (49%), Gaps = 4/84 (4%)
Query: 71 IALHPKAQRGDSFAFSK---MLENHLNINFFIAGAYGFEENFLKDC-QAWSLSEMTFSHE 126
+A+ K + + FA S + F I G+ G +K ++ S S+MT H+
Sbjct: 76 LAIEGKQKSSEEFAVSLDRLATYGKSKVAFVIGGSLGLSSEVMKRSNESLSFSKMTLPHQ 135
Query: 127 VAKIVLCEQIYRALSIIFKHPYHK 150
+ ++VL EQ+YRA I PYHK
Sbjct: 136 LMRLVLLEQVYRAFRINRGEPYHK 159
>ref|NP_539129.1| (NC_003317) Hypothetical Cytosolic Protein [Brucella melitensis]
gb|AAL51393.1| (AE009463) Hypothetical Cytosolic Protein [Brucella melitensis]
Length = 174
Score = 45.1 bits (105), Expect = 2e-04
Identities = 16/34 (47%), Positives = 28/34 (82%)
Query: 117 SLSEMTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
+L E+T+ H++A+I++ EQ+YRA +I+ HPYH+
Sbjct: 140 ALGELTWPHQIARILIAEQLYRAATILAGHPYHR 173
>ref|NP_469666.1| (NC_003212) conserved hypothetical protein, highly similar to B.
subtilis YydA proteinYyd [Listeria innocua]
emb|CAC95554.1| (AL596164) conserved hypothetical protein, highly similar to B.
subtilis YydA proteinYyd [Listeria innocua]
Length = 159
Score = 44.7 bits (104), Expect = 3e-04
Identities = 22/57 (38%), Positives = 32/57 (55%), Gaps = 1/57 (1%)
Query: 95 INFFIAGAYGFEENFLKDC-QAWSLSEMTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
+ F I G+ G E LK + S +T H++ ++VL EQ+YRA I+ PYHK
Sbjct: 103 VAFVIGGSLGLSEAVLKRSNEQISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYHK 159
>ref|NP_603360.1| (NC_003454) Hypothetical cytosolic protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gb|AAL94659.1| (AE010558) Hypothetical cytosolic protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 155
Score = 44.3 bits (103), Expect = 4e-04
Identities = 29/87 (33%), Positives = 42/87 (47%), Gaps = 6/87 (6%)
Query: 70 NIALHPKAQRGDSFAFSKMLENHLNI-----NFFIAGAYGFEENFLKDCQA-WSLSEMTF 123
NI L + + +S SK +EN NI NF I G+ G +N S TF
Sbjct: 69 NILLDLEGKEINSENMSKYIENLKNIGISSINFIIGGSNGVSKNVKNSVDMKLKFSHFTF 128
Query: 124 SHEVAKIVLCEQIYRALSIIFKHPYHK 150
H++ +++L EQ+YR +I YHK
Sbjct: 129 PHQLMRLILLEQVYRWFAISNNIKYHK 155
>gb|AAC44439.1| (U33315) orfL [Streptococcus pneumoniae]
Length = 131
Score = 43.9 bits (102), Expect = 5e-04
Identities = 37/130 (28%), Positives = 59/130 (44%), Gaps = 11/130 (8%)
Query: 30 ELELVDLFPKNTANAQKVSKKLAQKSYSLAFEPYLNPKAKNIALHPKAQRGDSF---AFS 86
+ E+++L + T + K S+ QK + + L+ A + A G +F FS
Sbjct: 4 KFEMIELSDEKTPD--KASESENQKILEIEGQRILSKIADRDFVIVLAIEGKTFFSEEFS 61
Query: 87 KMLEN-----HLNINFFIAGAYGFEENFLKDCQ-AWSLSEMTFSHEVAKIVLCEQIYRAL 140
K LE + F I G+ G + + S +T H++ ++VL EQIYRA
Sbjct: 62 KQLEETSIKGFSTLTFIIGGSLGLSSSVKNRANLSVSFGRLTLPHQLMRLVLVEQIYRAF 121
Query: 141 SIIFKHPYHK 150
+I PYHK
Sbjct: 122 TIQQGFPYHK 131
>ref|NP_196624.1| (NM_121100) putative protein [Arabidopsis thaliana]
pir||T49977 hypothetical protein F12B17.30 - Arabidopsis thaliana
emb|CAB89381.1| (AL353995) putative protein [Arabidopsis thaliana]
Length = 193
Score = 41.6 bits (96), Expect = 0.003
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 36 LFPKNTANAQKVSKKLAQKSYSLAFEPYLNPKAKNIALHPKAQRGDSFAFSKMLENHLN- 94
L N NAQ V ++ + +A + + L + + DS +++L + N
Sbjct: 75 LVRSNPRNAQDVRAQVEDEE--VAMMKLIGSDDWVVVLDERGRDIDSEQMAELLGDAGNS 132
Query: 95 ----INFFIAGAYGFEENFLKDCQAW-SLSEMTFSHEVAKIVLCEQIYRALSIIFKHPYH 149
I+F I GAYG K LS M +H++A +VL EQ+YR+ +I+ YH
Sbjct: 133 GASRISFCIGGAYGHGTQVRKRANVTIRLSSMVLNHQIALVVLMEQLYRSWTILKGQNYH 192
>ref|NP_422227.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
gb|AAK25395.1| (AE006003) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 155
Score = 41.6 bits (96), Expect = 0.003
Identities = 25/81 (30%), Positives = 45/81 (54%), Gaps = 4/81 (4%)
Query: 74 HPKAQRGDSFA--FSKMLEN-HLNINFFIAGAYGFEENFLKDC-QAWSLSEMTFSHEVAK 129
H KA + +FA +++ ++ + + F I GA G + + L + + T+ H +A+
Sbjct: 74 HGKAWKSRAFADHLARLRDDGNRRVVFLIGGADGLDPSILAAANETMAFGVQTWPHALAR 133
Query: 130 IVLCEQIYRALSIIFKHPYHK 150
+L EQIYRA +I+ PYH+
Sbjct: 134 AMLAEQIYRAATILSGSPYHR 154
>ref|NP_624195.1| (NC_003869) conserved hypothetical protein [Thermoanaerobacter
tengcongensis]
gb|AAM25799.1| (AE013208) conserved hypothetical protein [Thermoanaerobacter
tengcongensis]
Length = 133
Score = 40.8 bits (94), Expect = 0.004
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 22/137 (16%)
Query: 15 ELVKIYQKQCRQFDCELELVDLFPKNTANAQKVSKKLAQKSYSLAFEPYLNPKAKNIALH 74
E ++ Y K+ ++F C + L + K SKKL K +++ + P+ K I+
Sbjct: 18 EAIEEYFKRLQRF-CSISL---------SICKNSKKLPVKDLEKSYKILITPQGKTISSE 67
Query: 75 PKAQRGDSFAFSKMLENHLNINFFIA-GAYGFEENFLKDCQAWSLSEMTFSHEVAKIVLC 133
A + + + I F I G F+E F ++S+M S + +L
Sbjct: 68 KFALKIKDLEMKSITD----ITFLIGEGIEIFDEIF-------TISQMKMSKGLIATLLA 116
Query: 134 EQIYRALSIIFKHPYHK 150
EQ+YRA I+ PYHK
Sbjct: 117 EQLYRAYKILRNEPYHK 133
>ref|NP_520316.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
emb|CAD15902.1| (AL646068) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 156
Score = 40.4 bits (93), Expect = 0.006
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 118 LSEMTFSHEVAKIVLCEQIYRALSIIFKHPYHK 150
LS +T H + +++L EQ+YRA SI HPYH+
Sbjct: 123 LSSLTLPHGMVRVLLAEQLYRAWSITQNHPYHR 155
>gb|AAC96105.1| (AF074396) unknown [Desulfotomaculum thermocisternum]
Length = 159
Score = 40.0 bits (92), Expect = 0.007
Identities = 22/54 (40%), Positives = 29/54 (52%), Gaps = 1/54 (1%)
Query: 97 FFIAGAYGFEENFLKDCQA-WSLSEMTFSHEVAKIVLCEQIYRALSIIFKHPYH 149
F I G+ G + L S S+ TF H++ +I+L EQIYRA II YH
Sbjct: 105 FIIGGSAGLAGDVLARASLRLSFSKFTFPHQLMRIILLEQIYRAFKIIRGEKYH 158
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.323 0.135 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,634,800
Number of Sequences: 1026957
Number of extensions: 3204238
Number of successful extensions: 8674
Number of sequences better than 1.0e-02: 43
Number of HSP's better than 0.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 8641
Number of HSP's gapped (non-prelim): 43
length of query: 150
length of database: 324,149,939
effective HSP length: 110
effective length of query: 40
effective length of database: 211,184,669
effective search space: 8447386760
effective search space used: 8447386760
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 91 (39.7 bits)