BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645567|ref|NP_207743.1| hypothetical protein
[Helicobacter pylori 26695]
         (205 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207743.1|  (NC_000915) hypothetical protein [Helicoba...   415  e-115
ref|NP_223603.1|  (NC_000921) putative [Helicobacter pylori ...   403  e-112
ref|NP_281331.1|  (NC_002163) hypothetical protein Cj0120 [C...   185  2e-46

>ref|NP_207743.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||G64638 hypothetical protein HP0951 - Helicobacter pylori (strain 26695)
 gb|AAD08006.1| (AE000604) H. pylori predicted coding region HP0951 [Helicobacter
           pylori 26695]
          Length = 205

 Score =  415 bits (1067), Expect = e-115
 Identities = 205/205 (100%), Positives = 205/205 (100%)

Query: 1   MMQGFLLQTQSIRDEDLIVRVLTKNQLKTLYRFYGKRHSVLNVGRKIDFEEENDDKFLPK 60
           MMQGFLLQTQSIRDEDLIVRVLTKNQLKTLYRFYGKRHSVLNVGRKIDFEEENDDKFLPK
Sbjct: 1   MMQGFLLQTQSIRDEDLIVRVLTKNQLKTLYRFYGKRHSVLNVGRKIDFEEENDDKFLPK 60

Query: 61  LRNILHLGYIWEREMERLFFWQRFCALLFRHLEGVHSLDSVYFDTLDDGANKLAKQHPLR 120
           LRNILHLGYIWEREMERLFFWQRFCALLFRHLEGVHSLDSVYFDTLDDGANKLAKQHPLR
Sbjct: 61  LRNILHLGYIWEREMERLFFWQRFCALLFRHLEGVHSLDSVYFDTLDDGANKLAKQHPLR 120

Query: 121 VILEMYATLLNFEGRLQSYNSCFLCDAKLERSVALAQGFILAHPSCLKAKSLNLEKIQAF 180
           VILEMYATLLNFEGRLQSYNSCFLCDAKLERSVALAQGFILAHPSCLKAKSLNLEKIQAF
Sbjct: 121 VILEMYATLLNFEGRLQSYNSCFLCDAKLERSVALAQGFILAHPSCLKAKSLNLEKIQAF 180

Query: 181 FRTQSTIDLETEEVEELWRTLNLGF 205
           FRTQSTIDLETEEVEELWRTLNLGF
Sbjct: 181 FRTQSTIDLETEEVEELWRTLNLGF 205



>ref|NP_223603.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||F71875 hypothetical protein jhp0885 - Helicobacter pylori (strain J99)
 gb|AAD06469.1| (AE001518) putative [Helicobacter pylori J99]
          Length = 204

 Score =  403 bits (1035), Expect = e-112
 Identities = 197/204 (96%), Positives = 202/204 (98%)

Query: 2   MQGFLLQTQSIRDEDLIVRVLTKNQLKTLYRFYGKRHSVLNVGRKIDFEEENDDKFLPKL 61
           MQGFLLQTQSIRDEDLIV VLTKNQLKTLYRFYGKRHSVLNVGRKIDFEEENDDKFLPKL
Sbjct: 1   MQGFLLQTQSIRDEDLIVHVLTKNQLKTLYRFYGKRHSVLNVGRKIDFEEENDDKFLPKL 60

Query: 62  RNILHLGYIWEREMERLFFWQRFCALLFRHLEGVHSLDSVYFDTLDDGANKLAKQHPLRV 121
           RNILHLGYIWEREMERLFFWQRFCALLF+HLEGVHSLDS+YFDTLDDGA+KL+KQHPLRV
Sbjct: 61  RNILHLGYIWEREMERLFFWQRFCALLFKHLEGVHSLDSIYFDTLDDGASKLSKQHPLRV 120

Query: 122 ILEMYATLLNFEGRLQSYNSCFLCDAKLERSVALAQGFILAHPSCLKAKSLNLEKIQAFF 181
           ILEMYA LLNFEGRLQSYNSCFLCDAKLERSVALAQGFILAHPSCLKAKSL+LEKIQAFF
Sbjct: 121 ILEMYAVLLNFEGRLQSYNSCFLCDAKLERSVALAQGFILAHPSCLKAKSLDLEKIQAFF 180

Query: 182 RTQSTIDLETEEVEELWRTLNLGF 205
           RTQSTIDLETEEVEELWRTLNLGF
Sbjct: 181 RTQSTIDLETEEVEELWRTLNLGF 204



>ref|NP_281331.1| (NC_002163) hypothetical protein Cj0120 [Campylobacter jejuni]
 pir||H81428 hypothetical protein Cj0120 [imported] - Campylobacter jejuni
           (strain NCTC 11168)
 emb|CAB72604.1| (AL139074) hypothetical protein Cj0120 [Campylobacter jejuni]
          Length = 204

 Score =  185 bits (470), Expect = 2e-46
 Identities = 85/203 (41%), Positives = 127/203 (61%)

Query: 2   MQGFLLQTQSIRDEDLIVRVLTKNQLKTLYRFYGKRHSVLNVGRKIDFEEENDDKFLPKL 61
           MQGF+L TQ ++DEDLIV +L+   L   YRFYG RHS +  G KIDF  E +  FLP+L
Sbjct: 1   MQGFILHTQKVKDEDLIVYILSPKMLIKAYRFYGLRHSSILSGYKIDFALEENPSFLPRL 60

Query: 62  RNILHLGYIWEREMERLFFWQRFCALLFRHLEGVHSLDSVYFDTLDDGANKLAKQHPLRV 121
           +++LHLG++W  + +++  WQ F  LL+RHL+ V  LDS YFD LD+   +  KQ+P RV
Sbjct: 61  KDVLHLGFLWIMQRDKMLIWQEFIRLLYRHLKDVEELDSFYFDLLDECVKRFEKQNPKRV 120

Query: 122 ILEMYATLLNFEGRLQSYNSCFLCDAKLERSVALAQGFILAHPSCLKAKSLNLEKIQAFF 181
           I++ Y  +L FEGRL     CF CD K++ S+ L + F+ +H  C        +K++ F+
Sbjct: 121 IVDAYLKILEFEGRLHKDFFCFACDEKIQNSITLLRAFLPSHSQCALGFEFEEKKLKQFY 180

Query: 182 RTQSTIDLETEEVEELWRTLNLG 204
            +++    + EE+E L+  +  G
Sbjct: 181 SSKNCAIFDDEEIENLYHLIKEG 203



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.326    0.141    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,920,966
Number of Sequences: 1026957
Number of extensions: 4741189
Number of successful extensions: 12780
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12777
Number of HSP's gapped (non-prelim): 3
length of query: 205
length of database: 324,149,939
effective HSP length: 115
effective length of query: 90
effective length of database: 206,049,884
effective search space: 18544489560
effective search space used: 18544489560
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 94 (40.8 bits)