BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645569|ref|NP_207745.1| hypothetical protein
[Helicobacter pylori 26695]
(188 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207745.1| (NC_000915) hypothetical protein [Helicoba... 364 e-100
ref|NP_223605.1| (NC_000921) putative [Helicobacter pylori ... 350 5e-96
>ref|NP_207745.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64639 hypothetical protein HP0953 - Helicobacter pylori (strain 26695)
gb|AAD08007.1| (AE000604) H. pylori predicted coding region HP0953 [Helicobacter
pylori 26695]
Length = 188
Score = 364 bits (934), Expect = e-100
Identities = 188/188 (100%), Positives = 188/188 (100%)
Query: 1 MFKRMVLIALLGVFSSVSLSAKSLLRDDGILVSDLKGMKSELSDAPAWVFEDAKAPYEEM 60
MFKRMVLIALLGVFSSVSLSAKSLLRDDGILVSDLKGMKSELSDAPAWVFEDAKAPYEEM
Sbjct: 1 MFKRMVLIALLGVFSSVSLSAKSLLRDDGILVSDLKGMKSELSDAPAWVFEDAKAPYEEM 60
Query: 61 GVAYIPVNNKYLGIEQATLNAKLSLIVVFHEIMMKYKKRFMEQFHESEQTTTNISYAIYN 120
GVAYIPVNNKYLGIEQATLNAKLSLIVVFHEIMMKYKKRFMEQFHESEQTTTNISYAIYN
Sbjct: 61 GVAYIPVNNKYLGIEQATLNAKLSLIVVFHEIMMKYKKRFMEQFHESEQTTTNISYAIYN 120
Query: 121 YLATKIQVSNTYTNLKSEVAVVKIKLVGCQIEQIKRYLKASVENLNDNEIAYIAKVAQKE 180
YLATKIQVSNTYTNLKSEVAVVKIKLVGCQIEQIKRYLKASVENLNDNEIAYIAKVAQKE
Sbjct: 121 YLATKIQVSNTYTNLKSEVAVVKIKLVGCQIEQIKRYLKASVENLNDNEIAYIAKVAQKE 180
Query: 181 FGSVCALR 188
FGSVCALR
Sbjct: 181 FGSVCALR 188
>ref|NP_223605.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71875 hypothetical protein jhp0887 - Helicobacter pylori (strain J99)
gb|AAD06471.1| (AE001518) putative [Helicobacter pylori J99]
Length = 188
Score = 350 bits (898), Expect = 5e-96
Identities = 180/188 (95%), Positives = 183/188 (96%)
Query: 1 MFKRMVLIALLGVFSSVSLSAKSLLRDDGILVSDLKGMKSELSDAPAWVFEDAKAPYEEM 60
MFKRMVLIALLGVFSSVSLSAKSLLRDDGILVSDLKGMKSELSDAPAWVFED K PYEEM
Sbjct: 1 MFKRMVLIALLGVFSSVSLSAKSLLRDDGILVSDLKGMKSELSDAPAWVFEDPKVPYEEM 60
Query: 61 GVAYIPVNNKYLGIEQATLNAKLSLIVVFHEIMMKYKKRFMEQFHESEQTTTNISYAIYN 120
GVAYIPVNNKYLGIEQATLNAKLSLIVVFHEIM+KYKKRFMEQFHESEQT TNISYAIYN
Sbjct: 61 GVAYIPVNNKYLGIEQATLNAKLSLIVVFHEIMLKYKKRFMEQFHESEQTATNISYAIYN 120
Query: 121 YLATKIQVSNTYTNLKSEVAVVKIKLVGCQIEQIKRYLKASVENLNDNEIAYIAKVAQKE 180
YLATKI+VS+TYTNLKSEVAVVKIKL GCQIEQIKRYLKASVENLNDNEIAYIAKVAQKE
Sbjct: 121 YLATKIRVSDTYTNLKSEVAVVKIKLEGCQIEQIKRYLKASVENLNDNEIAYIAKVAQKE 180
Query: 181 FGSVCALR 188
FGSVC LR
Sbjct: 181 FGSVCTLR 188
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.133 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,644,025
Number of Sequences: 1026957
Number of extensions: 3428598
Number of successful extensions: 11645
Number of sequences better than 1.0e-02: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11643
Number of HSP's gapped (non-prelim): 2
length of query: 188
length of database: 324,149,939
effective HSP length: 114
effective length of query: 74
effective length of database: 207,076,841
effective search space: 15323686234
effective search space used: 15323686234
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 94 (40.8 bits)