BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645572|ref|NP_207748.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(242 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207748.1| (NC_000915) conserved hypothetical protein... 473 e-132
ref|NP_223608.1| (NC_000921) putative [Helicobacter pylori ... 456 e-128
ref|NP_281880.1| (NC_002163) putative ribosomal pseudouridi... 193 1e-48
ref|NP_562766.1| (NC_003366) conserved hypothetical protein... 116 2e-25
ref|NP_623145.1| (NC_003869) Pseudouridylate synthase, 23S ... 114 7e-25
ref|NP_268269.1| (NC_002662) pseudouridine synthase [Lactoc... 112 3e-24
ref|NP_295512.1| (NC_001263) ribosomal large subunit pseudo... 111 6e-24
ref|NP_109980.1| (NC_000912) similar to RIBOSOMAL LARGE SUB... 105 6e-22
ref|NP_604269.1| (NC_003454) Ribosomal large subunit pseudo... 104 1e-21
ref|NP_228272.1| (NC_000853) conserved hypothetical protein... 103 1e-21
ref|NP_465368.1| (NC_003210) similar to conserved hypotheti... 102 5e-21
ref|NP_348732.1| (NC_003030) Predicted pseudouridylate synt... 100 1e-20
ref|NP_655109.1| (NC_003995) PseudoU_synth_2, RNA pseudouri... 100 2e-20
ref|NP_623370.1| (NC_003869) Pseudouridylate synthase, 23S ... 99 4e-20
ref|NP_214204.1| (NC_000918) hypothetical protein [Aquifex ... 99 5e-20
ref|NP_471291.1| (NC_003212) similar to conserved hypotheti... 97 2e-19
ref|NP_347897.1| (NC_003030) Pseudouridylate synthase famil... 97 2e-19
ref|NP_216056.1| (NC_000962) hypothetical protein Rv1540 [M... 96 3e-19
ref|NP_608079.1| (NC_003485) conserved hypothetical protein... 96 3e-19
ref|NP_270003.1| (NC_002737) conserved hypothetical protein... 96 4e-19
ref|NP_078147.1| (NC_002162) pseudouridine synthase (uracil... 95 6e-19
ref|NP_269039.1| (NC_002737) conserved hypothetical protein... 95 8e-19
ref|NP_243713.1| (NC_002570) BH2847~unknown conserved prote... 94 1e-18
ref|NP_281244.1| (NC_002163) putative ribosomal pseudouridi... 94 1e-18
ref|NP_563038.1| (NC_003366) conserved hypothetical protein... 94 2e-18
ref|NP_519162.1| (NC_003295) PROBABLE RIBOSOMAL LARGE SUBUN... 93 2e-18
ref|NP_465768.1| (NC_003210) similar to putative ribosomal ... 93 2e-18
ref|NP_470305.1| (NC_003212) similar to ribosomal large sub... 93 2e-18
ref|NP_228748.1| (NC_000853) ribosomal large subunit pseudo... 93 2e-18
ref|NP_240167.1| (NC_002528) ribosomal large subunit pseudo... 92 4e-18
ref|NP_607042.1| (NC_003485) conserved hypothetical protein... 92 4e-18
ref|NP_072871.1| (NC_000908) sfhB protein, putative [Mycopl... 92 6e-18
ref|NP_232134.1| (NC_002505) ribosomal large subunit pseudo... 91 8e-18
ref|NP_207145.1| (NC_000915) conserved hypothetical protein... 91 1e-17
ref|NP_626332.1| (NC_003888) putative ribosomal large subun... 91 1e-17
ref|NP_246658.1| (NC_002663) SfB [Pasteurella multocida] >g... 91 1e-17
ref|NP_219609.1| (NC_000117) predicted pseudouridine synthe... 91 1e-17
ref|NP_601339.1| (NC_003450) COG0564:Pseudouridylate syntha... 91 1e-17
emb|CAA70352.1| (Y09142) product homologous to E.coli YfiI ... 91 1e-17
ref|NP_345413.1| (NC_003028) ribosomal large subunit pseudo... 90 2e-17
ref|NP_301874.1| (NC_002677) putative pseudouridine synthas... 90 2e-17
ref|NP_438344.1| (NC_000907) sfhB protein (sfhB) [Haemophil... 90 2e-17
ref|NP_212152.1| (NC_001318) conserved hypothetical protein... 90 2e-17
ref|NP_471677.1| (NC_003212) similar to putative ribosomal ... 90 2e-17
sp|P70870|RLUD_BORBU Ribosomal large subunit pseudouridine ... 90 2e-17
ref|NP_358424.1| (NC_003098) 23S rRNA pseudouridine synthas... 90 2e-17
ref|NP_207538.1| (NC_000915) conserved hypothetical protein... 90 2e-17
ref|NP_345571.1| (NC_003028) ribosomal large subunit pseudo... 89 3e-17
ref|NP_267154.1| (NC_002662) pseudouridine synthase [Lactoc... 89 4e-17
ref|NP_223040.1| (NC_000921) putative [Helicobacter pylori ... 89 4e-17
sp|O66114|YLP4_ZYMMO Hypothetical 24.4 kDa protein in LPD 3... 89 5e-17
ref|NP_406747.1| (NC_003143) ribosomal large subunit pseudo... 89 5e-17
ref|NP_326129.1| (NC_002771) RIBOSOMAL LARGE SUBUNIT PSEUDO... 88 9e-17
ref|NP_223400.1| (NC_000921) putative [Helicobacter pylori ... 87 1e-16
ref|NP_457133.1| (NC_003198) ftsH suppressor protein SfhB [... 87 1e-16
ref|NP_388802.1| (NC_000964) similar to hypothetical protei... 87 2e-16
ref|NP_231662.1| (NC_002505) ribosomal large subunit pseudo... 87 2e-16
ref|NP_645897.1| (NC_003923) conserved hypothetical protein... 87 2e-16
ref|NP_346438.1| (NC_003028) ribosomal large subunit pseudo... 87 2e-16
ref|NP_657862.1| (NC_003995) PseudoU_synth_2, RNA pseudouri... 87 2e-16
ref|NP_371721.1| (NC_002758) conserved hypothetical protein... 87 2e-16
ref|NP_230358.1| (NC_002505) ribosomal large subunit pseudo... 86 3e-16
ref|NP_289149.1| (NC_002655) suppressor of ftsH mutation [E... 86 3e-16
ref|NP_464494.1| (NC_003210) similar to ribosomal large sub... 86 3e-16
ref|NP_311484.1| (NC_002695) suppressor of ftsH mutation [E... 86 3e-16
dbj|BAA16479.1| (D90887) similar to [SwissProt Accession Nu... 86 4e-16
ref|NP_417085.1| (NC_000913) suppressor of ftsH mutation [E... 86 4e-16
sp|P50513|RLUD_ZYMMO RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE ... 86 4e-16
ref|NP_643525.1| (NC_003919) ribosomal large subunit pseudo... 86 4e-16
ref|NP_282427.1| (NC_002163) putative ribosomal pseudouridi... 86 4e-16
ref|NP_389044.1| (NC_000964) similar to hypothetical protei... 86 4e-16
gb|AAF78056.1|AF263561_1 (AF263561) 23S rRNA pseudouridine ... 86 4e-16
ref|NP_655191.1| (NC_003995) PseudoU_synth_2, RNA pseudouri... 86 5e-16
gb|AAF32394.1|AF224466_1 (AF224466) putative pseudouridylat... 85 6e-16
ref|NP_253234.1| (NC_002516) pseudouridine synthase [Pseudo... 85 6e-16
ref|NP_441760.1| (NC_000911) hypothetical protein [Synechoc... 85 8e-16
ref|NP_359981.1| (NC_003103) ribosomal large subunit pseudo... 84 1e-15
ref|NP_660679.1| (NC_004061) ribosomal large subunit pseudo... 84 1e-15
ref|NP_283696.1| (NC_003116) putative ribosomal large subun... 84 1e-15
ref|NP_359416.1| (NC_003098) Ribosomal large subunit pseudo... 84 1e-15
ref|NP_298229.1| (NC_002488) ribosomal large subunit pseudo... 84 2e-15
ref|NP_603548.1| (NC_003454) Ribosomal large subunit pseudo... 83 2e-15
ref|NP_273746.1| (NC_003112) ribosomal large subunit pseudo... 83 2e-15
ref|NP_493778.1| (NM_061377) K07E8.7.p [Caenorhabditis eleg... 83 3e-15
sp|O50310|YBC5_CHLVI Hypothetical 36.7 kDa protein in BCHI ... 83 3e-15
ref|NP_218779.1| (NC_000919) conserved hypothetical protein... 83 3e-15
ref|NP_220643.1| (NC_000963) unknown [Rickettsia prowazekii... 83 3e-15
ref|NP_269281.1| (NC_002737) conserved hypothetical protein... 82 5e-15
ref|NP_356602.1| (NC_003063) AGR_L_1625p [Agrobacterium tum... 82 5e-15
ref|NP_660729.1| (NC_004061) ribosomal large subunit pseudo... 82 5e-15
ref|NP_266520.1| (NC_002662) pseudouridine synthase [Lactoc... 82 7e-15
ref|NP_230535.1| (NC_002505) pseudouridine synthase Rlu fam... 82 7e-15
sp|Q45480|YLYB_BACSU Hypothetical protein ylyB >gi|1373157|... 82 7e-15
ref|NP_282921.1| (NC_003116) ribosomal large subunit pseudo... 81 9e-15
gb|AAG10501.1|AF279106_63 (AF279106) predicted ribosomal la... 81 9e-15
ref|NP_607212.1| (NC_003485) conserved hypothetical protein... 81 9e-15
ref|NP_245929.1| (NC_002663) RluC [Pasteurella multocida] >... 81 1e-14
ref|NP_296760.1| (NC_002620) RNA pseudouridylate synthase f... 81 1e-14
ref|NP_246775.1| (NC_002663) RsuA [Pasteurella multocida] >... 81 1e-14
ref|NP_273256.1| (NC_003112) ribosomal large subunit pseudo... 80 1e-14
ref|NP_638435.1| (NC_003902) ribosomal large subunit pseudo... 80 2e-14
ref|NP_251936.1| (NC_002516) pseudouridine synthase RluA [P... 80 2e-14
ref|NP_389429.1| (NC_000964) alternate gene name: ylmL~simi... 80 2e-14
sp|P44197|YQCB_HAEIN Hypothetical protein HI1435 80 2e-14
ref|NP_224915.1| (NC_000922) predicted Pseudouridine Syntha... 79 3e-14
ref|NP_355395.1| (NC_003062) AGR_C_4432p [Agrobacterium tum... 79 6e-14
sp|Q45826|YMDA_CHLAU Hypothetical protein in MDH 5'region (... 79 6e-14
ref|NP_533115.1| (NC_003304) pseudouridine synthase homolog... 79 6e-14
ref|NP_484566.1| (NC_003272) probable pseudouridine synthas... 78 7e-14
ref|NP_243408.1| (NC_002570) BH2542~unknown conserved prote... 78 1e-13
ref|NP_232505.1| (NC_002506) ribosomal large subunit pseudo... 78 1e-13
ref|NP_519749.1| (NC_003295) PROBABLE RIBOSOMAL LARGE SUBUN... 78 1e-13
ref|NP_251665.1| (NC_002516) ribosomal large subunit pseudo... 77 1e-13
ref|NP_372374.1| (NC_002758) conserved hypothetical protein... 77 2e-13
ref|NP_599568.1| (NC_003450) COG0564:Pseudouridylate syntha... 77 2e-13
ref|NP_245416.1| (NC_002663) unknown [Pasteurella multocida... 77 2e-13
ref|NP_240218.1| (NC_002528) ribosomal large subunit pseudo... 77 2e-13
ref|NP_104781.1| (NC_002678) pseudouridine synthase [Mesorh... 77 2e-13
ref|NP_662187.1| (NC_002932) ribosomal large subunit pseudo... 76 3e-13
ref|NP_371532.1| (NC_002758) conserved hypothetical protein... 76 3e-13
ref|XP_031554.2| (XM_031554) similar to CG6187 gene product... 76 4e-13
ref|NP_645706.1| (NC_003923) conserved hypothetical protein... 76 4e-13
ref|NP_455681.1| (NC_003198) ribosomal large subunit pseudo... 76 4e-13
gb|AAH07697.1|AAH07697 (BC007697) Unknown (protein for IMAG... 76 4e-13
ref|NP_460157.1| (NC_003197) 23S rRNA pseudouridylate synth... 76 4e-13
ref|NP_405172.1| (NC_003143) ribosomal large subunit pseudo... 75 5e-13
ref|XP_130420.1| (XM_130420) similar to CG6187 gene product... 75 5e-13
ref|NP_354476.1| (NC_003062) AGR_C_2714p [Agrobacterium tum... 75 6e-13
gb|AAD12509.1| (U02214) Homology to M62747 [Mycoplasma geni... 75 6e-13
ref|NP_532161.1| (NC_003304) ribosomal large subunit pseudo... 75 6e-13
ref|NP_438775.1| (NC_000907) conserved hypothetical protein... 75 8e-13
ref|NP_287220.1| (NC_002655) orf, hypothetical protein [Esc... 74 1e-12
ref|NP_415604.1| (NC_000913) orf, hypothetical protein [Esc... 74 1e-12
ref|NP_603923.1| (NC_003454) tRNA pseudouridine synthase A ... 74 1e-12
pir||B23747 ORFX protein, 5' of ams - Escherichia coli (fra... 74 1e-12
ref|NP_438574.1| (NC_000907) conserved hypothetical protein... 74 1e-12
ref|NP_289346.1| (NC_002655) Z4107 gene product [Escherichi... 74 1e-12
ref|NP_461885.1| (NC_003197) putative synthase [Salmonella ... 74 1e-12
ref|NP_417271.1| (NC_000913) orf, hypothetical protein [Esc... 74 1e-12
ref|NP_420787.1| (NC_002696) ribosomal large subunit pseudo... 74 2e-12
ref|NP_457360.1| (NC_003198) putative RNA pseudouridylate s... 74 2e-12
gb|AAF52959.1| (AE003628) CG7475 gene product [Drosophila m... 74 2e-12
ref|NP_386831.1| (NC_003047) PUTATIVE RIBOSOMAL LARGE SUBUN... 73 2e-12
ref|NP_404140.1| (NC_003143) ribosomal large subunit pseudo... 73 3e-12
ref|NP_299883.1| (NC_002488) pseudouridylate synthase [Xyle... 73 3e-12
ref|NP_220177.1| (NC_000117) (Pseudouridine Synthase) [Chla... 72 4e-12
ref|NP_642429.1| (NC_003919) pseudouridylate synthase [Xant... 72 4e-12
ref|NP_011685.1| (NC_001139) RNA:Psi-synthase; Pus6p [Sacch... 72 4e-12
ref|NP_592881.1| (NC_003424) hypothetical protein [Schizosa... 72 4e-12
ref|NP_539294.1| (NC_003317) RIBOSOMAL LARGE SUBUNIT PSEUDO... 72 5e-12
ref|NP_637448.1| (NC_003902) pseudouridylate synthase [Xant... 72 7e-12
ref|NP_221194.1| (NC_000963) SFHB PROTEIN HOMOLOG (sfhB) [R... 72 7e-12
ref|NP_385495.1| (NC_003047) PROBABLE RIBOSOMAL LARGE SUBUN... 71 9e-12
ref|NP_360947.1| (NC_003103) sfhB protein homolog [Ricketts... 71 9e-12
ref|NP_212949.1| (NC_001318) conserved hypothetical protein... 71 1e-11
gb|EAA14556.1| (AAAB01008980) ebiP4675 [Anopheles gambiae s... 71 1e-11
ref|NP_010248.1| (NC_001136) Hypothetical ORF; Ydl036cp [Sa... 70 2e-11
ref|NP_420097.1| (NC_002696) ribosomal large subunit pseudo... 70 2e-11
ref|NP_296413.1| (NC_002620) ribosomal large subunit pseudo... 69 6e-11
ref|NP_488120.1| (NC_003272) ribosomal large chain pseudour... 69 6e-11
gb|AAF52961.1| (AE003628) CG6187 gene product [Drosophila m... 68 1e-10
ref|NP_609411.1| (NM_135567) CG6187 gene product [Drosophil... 68 1e-10
ref|NP_275010.1| (NC_003112) conserved hypothetical protein... 68 1e-10
ref|NP_539900.1| (NC_003317) RIBOSOMAL LARGE SUBUNIT PSEUDO... 67 1e-10
ref|NP_294685.1| (NC_001263) ribosomal large subunit pseudo... 67 1e-10
ref|NP_283249.1| (NC_003116) putative psedouridine synthase... 67 2e-10
sp|Q47417|YQCB_ERWCA Exoenzyme regulation regulon ORF1 >gi|... 67 2e-10
ref|NP_102152.1| (NC_002678) ribosomal large subunit pseudo... 67 2e-10
ref|NP_454707.1| (NC_003198) ribosomal large subunit pseudo... 66 3e-10
ref|XP_128468.1| (XM_128468) RIKEN cDNA 2310051D06 gene [Mu... 66 3e-10
ref|NP_459100.1| (NC_003197) 23S rRNA pseudouridylate 746 s... 66 3e-10
ref|NP_014575.1| (NC_001147) Riboflavin biosynthesis; Rib2p... 66 4e-10
ref|NP_199927.1| (NM_124493) putative protein [Arabidopsis ... 66 4e-10
gb|AAM61068.1| (AY084499) unknown [Arabidopsis thaliana] 66 4e-10
gb|AAL31256.1| (AY061753) AT5g51140/MWD22_8 [Arabidopsis th... 66 4e-10
ref|NP_562120.1| (NC_003366) ribosomal large subunit pseudo... 65 5e-10
ref|NP_438215.1| (NC_000907) conserved hypothetical protein... 65 5e-10
ref|NP_245570.1| (NC_002663) unknown [Pasteurella multocida... 65 6e-10
ref|NP_404651.1| (NC_003143) Conserved hypothetical protein... 64 1e-09
ref|NP_478072.1| (NM_058192) ribosomal large subunit pseudo... 64 1e-09
dbj|BAB13516.1| (AB037369) pseudouridine synthase homolog [... 64 1e-09
ref|NP_414600.1| (NC_000913) pseudouridylate synthase; orf,... 64 2e-09
ref|NP_597410.1| (NC_003232) similarity to HYPOTHETICAL PRO... 63 3e-09
ref|NP_285754.1| (NC_002655) orf, hypothetical protein [Esc... 62 4e-09
ref|NP_218671.1| (NC_000919) conserved hypothetical protein... 62 4e-09
ref|XP_134644.1| (XM_134644) RIKEN cDNA 2410001E19 [Mus mus... 62 4e-09
ref|NP_177732.1| (NM_106254) RNA pseudouridylate synthase, ... 62 5e-09
gb|AAF26765.1|AC007396_14 (AC007396) T4O12.25 [Arabidopsis ... 62 5e-09
ref|NP_190794.1| (NM_115086) pseudouridine synthase, putati... 62 7e-09
ref|NP_295407.1| (NC_001263) pseudouridine synthase, putati... 62 7e-09
ref|NP_231304.1| (NC_002505) pseudouridine synthase Rlu fam... 61 9e-09
ref|NP_635620.1| (NC_003902) pseudouridylate synthase [Xant... 61 9e-09
ref|NP_325948.1| (NC_002771) RIBOSOMAL LARGE SUBUNIT PSEUDO... 60 2e-08
pir||T46096 hypothetical protein T25B15.30 - Arabidopsis th... 60 3e-08
ref|NP_640600.1| (NC_003919) pseudouridylate synthase [Xant... 59 4e-08
ref|NP_419272.1| (NC_002696) ribosomal large subunit pseudo... 59 6e-08
ref|NP_077944.1| (NC_002162) pseudouridine synthase (uracil... 57 1e-07
gb|EAA09234.1| (AAAB01008898) agCP13979 [Anopheles gambiae ... 57 1e-07
ref|NP_347651.1| (NC_003030) Pseudouridylate synthase [Clos... 57 1e-07
ref|NP_073042.1| (NC_000908) conserved hypothetical protein... 55 5e-07
ref|NP_602133.1| (NC_003450) COG0564:Pseudouridylate syntha... 55 5e-07
ref|NP_283855.1| (NC_003116) hypothetical protein NMA1085 [... 55 9e-07
ref|NP_273908.1| (NC_003112) YabO/YceC/SfhB family protein ... 54 2e-06
ref|NP_440308.1| (NC_000911) hypothetical protein [Synechoc... 53 3e-06
ref|XP_165571.1| (XM_165571) hypothetical protein FLJ14494 ... 53 3e-06
ref|NP_116184.1| (NM_032795) hypothetical protein FLJ14494 ... 53 3e-06
gb|AAM33173.1| (AC117072) hypothetical protein [Dictyosteli... 53 3e-06
ref|NP_337928.1| (NC_002755) RNA pseudouridylate synthase f... 52 4e-06
ref|NP_217817.1| (NC_000962) hypothetical protein Rv3300c [... 52 4e-06
ref|NP_176031.1| (NM_104514) RNA pseudouridylate synthase, ... 51 1e-05
ref|NP_439586.1| (NC_000907) conserved hypothetical protein... 51 1e-05
ref|NP_473106.1| (NC_000910) pseudouridine synthetase (RsuA... 50 2e-05
gb|AAL47436.1| (AY069882) AT3g52260/T25B15_30 [Arabidopsis ... 49 5e-05
ref|NP_224603.1| (NC_000922) predicted pseudouridine synthe... 49 6e-05
gb|AAB07777.1| (U67934) 44.9 kDa protein C18B11 homolog [Ho... 49 6e-05
ref|NP_625900.1| (NC_003888) putative ribosomal pseudouridi... 48 8e-05
gb|AAG51501.1|AC058785_4 (AC058785) unknown protein [Arabid... 48 8e-05
ref|NP_110237.1| (NC_000912) pseudouridine synthase [Mycopl... 47 2e-04
ref|NP_372017.1| (NC_002758) ribosomal large subunit pseudo... 47 2e-04
ref|NP_644614.1| (NC_003919) pseudouridylate synthase [Xant... 46 3e-04
gb|AAG24942.1|AF128845_1 (AF128845) RluD [Sinorhizobium mel... 45 5e-04
ref|NP_639523.1| (NC_003902) pseudouridylate synthase [Xant... 45 5e-04
dbj|BAB26589.1| (AK009926) data source:SPTR, source key:Q9U... 45 5e-04
ref|NP_188575.1| (NM_112831) unknown protein [Arabidopsis t... 45 7e-04
emb|CAC00347.2| (AL160371) possible hypothetical 46.8 Kd pr... 43 0.003
gb|AAH12951.1|AAH12951 (BC012951) Unknown (protein for IMAG... 43 0.003
ref|NP_390197.1| (NC_000964) similar to hypothetical protei... 42 0.004
gb|AAC69259.1| (AF025970) hypothetical protein [Helicobacte... 42 0.006
ref|NP_405754.1| (NC_003143) putative RNA pseudouridylate s... 42 0.008
gb|AAL79727.1|AC091774_18 (AC091774) putative ribosomal lar... 41 0.010
>ref|NP_207748.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
sp|O25610|Y956_HELPY Hypothetical protein HP0956
pir||D64639 conserved hypothetical protein HP0956 - Helicobacter pylori
(strain 26695)
gb|AAD07999.1| (AE000604) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 242
Score = 473 bits (1216), Expect = e-132
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MEKAYKILSVQENISHKKAKALIDSGLVSIGGKKLMVARKELPKNTHFSVQKVEKPSVIF 60
MEKAYKILSVQENISHKKAKALIDSGLVSIGGKKLMVARKELPKNTHFSVQKVEKPSVIF
Sbjct: 1 MEKAYKILSVQENISHKKAKALIDSGLVSIGGKKLMVARKELPKNTHFSVQKVEKPSVIF 60
Query: 61 EDENILALFKPPFIESYDLASFFKGWALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDR 120
EDENILALFKPPFIESYDLASFFKGWALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDR
Sbjct: 61 EDENILALFKPPFIESYDLASFFKGWALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDR 120
Query: 121 AVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLK 180
AVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLK
Sbjct: 121 AVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLK 180
Query: 181 VGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKRLMLHAHKIALLGYEFEAIAPKEF 240
VGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKRLMLHAHKIALLGYEFEAIAPKEF
Sbjct: 181 VGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKRLMLHAHKIALLGYEFEAIAPKEF 240
Query: 241 EI 242
EI
Sbjct: 241 EI 242
>ref|NP_223608.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZKP5|Y956_HELPJ Hypothetical protein JHP0890
pir||C71876 hypothetical protein jhp0890 - Helicobacter pylori (strain J99)
gb|AAD06458.1| (AE001518) putative [Helicobacter pylori J99]
Length = 242
Score = 456 bits (1174), Expect = e-128
Identities = 232/242 (95%), Positives = 237/242 (97%)
Query: 1 MEKAYKILSVQENISHKKAKALIDSGLVSIGGKKLMVARKELPKNTHFSVQKVEKPSVIF 60
MEKAYK+LSVQENISHKKAKALIDSGLVSIGG+KLMVARKELP+NT FSVQKVEKPSVIF
Sbjct: 1 MEKAYKLLSVQENISHKKAKALIDSGLVSIGGQKLMVARKELPQNTRFSVQKVEKPSVIF 60
Query: 61 EDENILALFKPPFIESYDLASFFKGWALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDR 120
EDENILALFKPPFIESYDL SFFKGWALLHRLDKETSGV+LLVKENSEFHLKAKKAFKDR
Sbjct: 61 EDENILALFKPPFIESYDLVSFFKGWALLHRLDKETSGVILLVKENSEFHLKAKKAFKDR 120
Query: 121 AVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLK 180
AVKKEYLA+ QGIIEEEREINAPILT KTTKAFSKISKKGQEAVTIITPLKIINKKTLLK
Sbjct: 121 AVKKEYLAIVQGIIEEEREINAPILTIKTTKAFSKISKKGQEAVTIITPLKIINKKTLLK 180
Query: 181 VGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKRLMLHAHKIALLGYEFEAIAPKEF 240
VGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPS AKRLMLHAHKIALLGYEFEAIAPKEF
Sbjct: 181 VGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSSAKRLMLHAHKIALLGYEFEAIAPKEF 240
Query: 241 EI 242
EI
Sbjct: 241 EI 242
>ref|NP_281880.1| (NC_002163) putative ribosomal pseudouridine synthase
[Campylobacter jejuni]
pir||G81341 pseudouridylate synthase (EC 4.2.1.70) rRNA-specific Cj0708
[imported] - Campylobacter jejuni (strain NCTC 11168)
emb|CAB72982.1| (AL139076) putative ribosomal pseudouridine synthase [Campylobacter
jejuni]
Length = 250
Score = 193 bits (491), Expect = 1e-48
Identities = 110/234 (47%), Positives = 150/234 (64%), Gaps = 5/234 (2%)
Query: 2 EKAYKILSVQENISHKKAKALIDSGLVSIGGKKLMVARKELPKNTHFSVQKVEKPSVIFE 61
EKAYK+L++QE IS+++AK LID G V GKK++VAR + F+V K + P +IFE
Sbjct: 3 EKAYKLLALQEKISNREAKDLIDKGCVFSYGKKVVVARALMSDKARFNVIKAKNPQIIFE 62
Query: 62 DENILALFKPPFIESYDLASFFKGWALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRA 121
D+ I+A+ KP S DL F LL+RLDKETSGV+LL K+ +F + FK
Sbjct: 63 DDKIIAINKPYAYVSEDLEKKFNA-KLLNRLDKETSGVILLCKD-EDFRKLCIEEFKKHR 120
Query: 122 VKKEYLALTQGIIEEEREINAPILTFKTT-KAFSKISKKGQEAVTIITPLKIINKKTLLK 180
V K Y+A+ G++ EE E+N PI T K A SK+SK G A++IITP+ + +KKTL K
Sbjct: 121 VYKSYIAVLDGVLAEEVEVNEPIFTIKVKGGALSKVSKDGLSALSIITPIMMQSKKTLAK 180
Query: 181 VGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKRLMLHAHKIALLGYEFEA 234
+ I+TGRTHQIRVH K I H ++GD Y S R+ LH+++I + Y F A
Sbjct: 181 IVIQTGRTHQIRVHAKFIKHGVVGDEKYAKISS--DRMYLHSYEIKIFNYHFRA 232
>ref|NP_562766.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB81556.1| (AP003192) conserved hypothetical protein [Clostridium perfringens]
Length = 306
Score = 116 bits (290), Expect = 2e-25
Identities = 83/281 (29%), Positives = 144/281 (50%), Gaps = 43/281 (15%)
Query: 3 KAYKILSVQ-ENISHKKAKALIDSGLVSIGGK------KLMVA---RKELPKNTHFSVQK 52
+A K L+++ + +S + L D G + I GK KL V E+P+ V+
Sbjct: 18 RADKFLALKIDGVSRNFIQGLFDDGKILINGKAEKGKYKLSVGDCVEVEIPEPEELKVEA 77
Query: 53 VEKP-SVIFEDENILALFKPPFIESYDLASFFKGW---------------------ALLH 90
+ P ++++EDE+++ + KP + + + G ++H
Sbjct: 78 EDIPLNIVYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLHHCDDLSGINGVIRPGIVH 137
Query: 91 RLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER-EINAPILTFKT 149
R+DK+TSG+ L+V +N H K + FKD ++K+EY A+ +G ++E I+AP+
Sbjct: 138 RIDKDTSGI-LVVAKNDNAHQKLAEQFKDHSIKREYYAIVEGRFKKEGGTIDAPLGRHHR 196
Query: 150 TKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLY- 208
+ + K G+ AVT LK+ N +L+K ++TGRTHQIRVH+ I HP++GDT+Y
Sbjct: 197 DRLKYAVVKDGKRAVTHYEVLKVFNSCSLVKCTLETGRTHQIRVHMAFIGHPLLGDTVYG 256
Query: 209 -NNEPSLAKR-LMLHAHKIALLG------YEFEAIAPKEFE 241
+ L++ +LHA + + EF++ P+ FE
Sbjct: 257 LKKQKKLSQEGQVLHAKTLGFIHPTTGEYVEFDSELPEYFE 297
>ref|NP_623145.1| (NC_003869) Pseudouridylate synthase, 23S RNA-specific
[Thermoanaerobacter tengcongensis]
gb|AAM24749.1| (AE013110) Pseudouridylate synthase, 23S RNA-specific
[Thermoanaerobacter tengcongensis]
Length = 309
Score = 114 bits (286), Expect = 7e-25
Identities = 80/273 (29%), Positives = 135/273 (49%), Gaps = 41/273 (15%)
Query: 8 LSVQENISHKKAKALIDSGLVSIGGKKLMVARK-ELPKNTHFSVQKVEKPSVI------- 59
L+ + + S K LI+ GLV + GK + + K + ++++ EK V+
Sbjct: 24 LASELDYSRSYIKKLIEEGLVLVNGKNVKPSYKVKEDDEVIVNIKEAEKIEVVPENIPLD 83
Query: 60 --FEDENILALFKPPFIESYDLASFFKGW---------------------ALLHRLDKET 96
+EDE+I+ + KP + + + G ++HRLDK+T
Sbjct: 84 ILYEDEDIIVINKPQGMVVHPAPGNYSGTLVNALLYHCKNLSGINGILRPGIVHRLDKDT 143
Query: 97 SGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGII-EEEREINAPILTFKTTKAFSK 155
SGV+++ K N + H+ K+R+V K+Y+A+ +G+I EEE +I API +
Sbjct: 144 SGVMVVAK-NDKAHMSLSNQIKERSVLKKYVAIVEGVIKEEEGKIEAPIGRHPVDRKRMA 202
Query: 156 ISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNE---- 211
+ + G+ A+T+ L+ T ++ IKTGRTHQIRVHL +I HP++GD +Y +
Sbjct: 203 VVQDGRYALTLYKVLERFKNNTFVEATIKTGRTHQIRVHLSYIGHPVVGDPVYGYKKQKF 262
Query: 212 ----PSLAKRLMLHAHKIALLGYEFEAIAPKEF 240
+L +++ H + EFEA P F
Sbjct: 263 KLEGQALHSKVLGFIHPTKGVYMEFEAPLPDYF 295
>ref|NP_268269.1| (NC_002662) pseudouridine synthase [Lactococcus lactis subsp.
lactis]
gb|AAK06210.1|AE006439_7 (AE006439) pseudouridine synthase [Lactococcus lactis subsp.
lactis]
Length = 288
Score = 112 bits (281), Expect = 3e-24
Identities = 80/252 (31%), Positives = 128/252 (50%), Gaps = 23/252 (9%)
Query: 1 MEKAYKILSVQENISHKKAKALIDSGLVS------IGGKKLMVARKELPKNTHFSVQKVE 54
+EK + I Q + K L+++ L++ G K ++ E N
Sbjct: 20 LEKTWFIPRKQRHFLRMKKHCLVNNKLINENQLVHAGDKITLIFDNEDFSNLSLKFGSAN 79
Query: 55 KPSVIFEDENILALFKPP------------FIESYDLASFFKGWALLHRLDKETSGVVLL 102
+++EDE+++ + KP ++++ A+ + ++HRLD+ TSG VL
Sbjct: 80 LADILYEDEHLIVVNKPEGMKTHGNTADELALQNHVAAAINQEVFVVHRLDQATSGAVLF 139
Query: 103 VKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER-EINAPILTFKTTKAFSKISKKGQ 161
K + K F++ + +EYLAL +G E + I+ I + K +S KGQ
Sbjct: 140 AKNQFVLPILGKM-FEENKIHREYLALVKGHFSENQFTIDRAIGQNRHDKNKRILSAKGQ 198
Query: 162 EAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKRLMLH 221
+AVT + +K KTL+K + TGRTHQIRVHL +NHPIIGD LY + +R+MLH
Sbjct: 199 KAVTHVEIIKKFTDKTLVKCTLDTGRTHQIRVHLSSLNHPIIGDALYGQKSQ--ERMMLH 256
Query: 222 AHKIALLGYEFE 233
A KI ++ + FE
Sbjct: 257 AGKI-IIPHPFE 267
>ref|NP_295512.1| (NC_001263) ribosomal large subunit pseudouridine synthase D
[Deinococcus radiodurans]
pir||C75353 ribosomal large subunit pseudouridine synthase D - Deinococcus
radiodurans (strain R1)
gb|AAF11343.1|AE002020_2 (AE002020) ribosomal large subunit pseudouridine synthase D
[Deinococcus radiodurans]
Length = 338
Score = 111 bits (278), Expect = 6e-24
Identities = 80/260 (30%), Positives = 122/260 (46%), Gaps = 45/260 (17%)
Query: 7 ILSVQENISHKKAKALIDSGLVSIGGKKLMVARKELPKNTHFSVQKVEKPS--------- 57
++S+ +S + I++GLV I G+ A ++L V PS
Sbjct: 36 VVSLLSGVSRSQVAGWIEAGLVEIDGRAASKASQKLRGGEALRVSPPPLPSAQVEPEDVP 95
Query: 58 --VIFEDENILALFKPPFIESYDLASFFKGW-------------------------ALLH 90
VIFEDE+++A+ KPP + ++ G ++H
Sbjct: 96 LDVIFEDEHLIAINKPPGMVTHPAPGVISGTLVNALLGRMSLPEQQDFDGPDGYRPGIVH 155
Query: 91 RLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER--EINAPILTFK 148
RLDK+TSGV+++ K + H + AFKDR KK YLA+ G + ER +++API +
Sbjct: 156 RLDKDTSGVIVVAKTVAA-HARLAAAFKDRETKKTYLAIAAGAWKAERPVQVDAPIGRHQ 214
Query: 149 TTKAFSKISKKG-QEAVTIITPLKII-----NKKTLLKVGIKTGRTHQIRVHLKHINHPI 202
+ + G +EA T+ TPL L++ +TGRTHQIRVHL H+ PI
Sbjct: 215 IQRQRMTVGGAGAREAQTLFTPLDAHPDGHGRTLALVRAQPRTGRTHQIRVHLAHLGSPI 274
Query: 203 IGDTLYNNEPSLAKRLMLHA 222
+GD +Y + R LHA
Sbjct: 275 LGDAVYGRASEIMPRHALHA 294
>ref|NP_109980.1| (NC_000912) similar to RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE
SYNTHASE D [Mycoplasma pneumoniae]
sp|P75485|Y209_MYCPN Hypothetical protein MG209 homolog (H10_orf309)
pir||S73869 hypothetical protein yceC - Mycoplasma pneumoniae (strain ATCC
29342)
gb|AAB96191.1| (AE000053) similar to RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE
SYNTHASE D [Mycoplasma pneumoniae]
Length = 309
Score = 105 bits (261), Expect = 6e-22
Identities = 85/272 (31%), Positives = 128/272 (46%), Gaps = 45/272 (16%)
Query: 1 MEKAYKILSVQE---------NISHKKAKALIDSGLVSIGGKKLMVA------------- 38
ME+ + + + Q N+S K LI GLVS+ GKK+
Sbjct: 1 MEQTFSVTTAQRLDTFLATLLNLSRVKVAKLIVDGLVSVNGKKITKNGWLVQPEDRVHVN 60
Query: 39 -RKELPKNTHFSVQKVEKP-SVIFEDENILALFKP--------PFIESYDL--ASFF--- 83
+EL + VQ + P +++EDE I+ + KP F ES L A+ F
Sbjct: 61 WSEELFEKVPVEVQPYDFPLDILYEDEQIMVVNKPNGLISHPTSFNESESLLGAALFHCN 120
Query: 84 -KGWALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEE-EREIN 141
+ L+HRLD++TSGV++L K S L +K + R +K+ YLAL ++ I+
Sbjct: 121 HQPVFLVHRLDRDTSGVIMLAKNQSSL-LHLQKQLQQRVMKRYYLALVHFPLDSLSGTIS 179
Query: 142 APILTFKTTKAFSKISKKGQEAVTIITPLKIIN---KKTLLKVGIKTGRTHQIRVHLKHI 198
AP+ K K+ +A T ++N K L+K + TGRTHQIRVHL+ I
Sbjct: 180 APLERVGNNKVMWKVGNSSNKAKNAFTKFTVLNQNEKAALIKCELLTGRTHQIRVHLQFI 239
Query: 199 NHPIIGDTLY--NNEPSLAKRLMLHAHKIALL 228
HP+ D LY +E + LHA +I+ +
Sbjct: 240 KHPVYNDPLYGLKSEQATEYGQYLHAQQISFI 271
>ref|NP_604269.1| (NC_003454) Ribosomal large subunit pseudouridine synthase D
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gb|AAL95568.1| (AE010641) Ribosomal large subunit pseudouridine synthase D
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Length = 319
Score = 104 bits (259), Expect = 1e-21
Identities = 67/235 (28%), Positives = 120/235 (50%), Gaps = 30/235 (12%)
Query: 23 IDSGLVSIGGKKLMVARKE---LPKNTHFSVQKVEKP-SVIFEDENILALFKPPFIESYD 78
++S +++ G+KL + K +P+ + ++ P ++++E+++ + + K + +
Sbjct: 53 VNSKIINKNGRKLKLGEKIEVLIPEEENIDIEPENIPLNIVYENDDFILINKSYGMVVHP 112
Query: 79 LASFFKGW---------------------ALLHRLDKETSGVVLLVKENSEFHLKAKKAF 117
+ G ++HRLDK+TSG++L+ K N H K F
Sbjct: 113 AYGNYTGTLVNALLYYTNNLSSVNGNIRPGIIHRLDKDTSGLILVAKNNYA-HAKLASMF 171
Query: 118 KDRAVKKEYLALTQGIIEEE----REINAPILTFKTTKAFSKISKKGQEAVTIITPLKII 173
D+ + K YL + +G EE R N K K + + + G+ A++ ++ +
Sbjct: 172 IDKTIHKTYLCIVKGNFSEENLSGRIENLIGRDSKDRKKMTIVKENGKIAISNYKVVEQV 231
Query: 174 NKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKRLMLHAHKIALL 228
+L++V I+TGRTHQIRVH+K INH I+GD++Y E KR MLHA+K+ L
Sbjct: 232 EGYSLVEVAIETGRTHQIRVHMKSINHVILGDSVYGTEDKNVKRQMLHAYKLEFL 286
>ref|NP_228272.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
pir||F72373 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD35547.1|AE001724_5 (AE001724) conserved hypothetical protein [Thermotoga maritima]
Length = 311
Score = 103 bits (258), Expect = 1e-21
Identities = 85/274 (31%), Positives = 132/274 (48%), Gaps = 41/274 (14%)
Query: 1 MEKAYKILSVQENISHKKAKALIDSGLVSIGGKKLMVARKELPKNTHFSVQKVEKPSVIF 60
++KA K V+ N KK + G + + V E P+ +++E V++
Sbjct: 32 IQKAIKEGKVKVNGQIKKPSYKLKEGEI------VEVDLPEKPQEATVQPEEIEL-KVLY 84
Query: 61 EDENILALFKPPFIESYDLASFFKGW---------------------ALLHRLDKETSGV 99
ED +I+ + KP + + + S G ++HRLDKETSGV
Sbjct: 85 EDRDIIVIDKPGDMIVHPVPSKLSGTLVNALLHHCKDLQGVGGKLRPGIVHRLDKETSGV 144
Query: 100 VLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIE-EEREINAPILTFKTTKAFSKISK 158
+++ K N H K FKDR VKK Y+ L +G ++ +E I+ P+ + + +
Sbjct: 145 IVVAK-NDFAHQSLSKQFKDRKVKKTYILLVKGKMKNDEGVIDLPLARHPVLRIKMAVVE 203
Query: 159 KGQEAVTIITPLKIINK-KTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLY----NNEPS 213
G+EA+T LK + TL+ KTGRTHQIRVH+K + HPI+GD +Y +E
Sbjct: 204 TGKEAITEYRVLKRFDDVATLVLAFPKTGRTHQIRVHMKSLGHPIMGDKIYGKPKEDEIF 263
Query: 214 LAKRLMLHAHKIALL------GYEFEAIAPKEFE 241
KR MLHA K+ EF + P++F+
Sbjct: 264 GIKRQMLHALKLGFFHPRTGEWMEFVSPLPEDFK 297
>ref|NP_465368.1| (NC_003210) similar to conserved hypothetical proteins [Listeria
monocytogenes EGD-e]
emb|CAC99921.1| (AL591981) similar to conserved hypothetical proteins [Listeria
monocytogenes]
Length = 303
Score = 102 bits (253), Expect = 5e-21
Identities = 80/282 (28%), Positives = 133/282 (46%), Gaps = 46/282 (16%)
Query: 2 EKAYKILSVQENISHKKAKALIDSGLVSIGGKKLMVARK-ELPKNTHFSVQKVEKPSVI- 59
E+ K+++ S + ++ +G +++ G+ K ++ H+ V++ E+ V+
Sbjct: 15 ERVDKVIAEMMGKSRSAIQLMLKNGDITVNGELAKPNYKVQVGDEIHYEVREPEELEVLA 74
Query: 60 --------FEDENILALFKPPFIESYDLASFFKGW---------------------ALLH 90
FED+++L + KP + + A G ++H
Sbjct: 75 EDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTLVNALLFHCDDLSGINGKIRPGIVH 134
Query: 91 RLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQG-IIEEEREINAPILTFKT 149
R+DK+TSG+ L+V +N H K KD+ +EY+AL G I+ ++ I API K
Sbjct: 135 RIDKDTSGL-LMVAKNDHAHESLAKQLKDKTSDREYIALVHGDIVHQKGTIEAPIGRAKE 193
Query: 150 TKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYN 209
+ + + G+EA T L+ + TL+ + TGRTHQIRVHLK+I HP+ GD Y
Sbjct: 194 DRQKMAVVRDGKEARTHFEVLERLPGYTLINCKLDTGRTHQIRVHLKYIGHPLAGDPKYG 253
Query: 210 NEPSL-AKRLMLHAHKIALLGYE---------FEAIAPKEFE 241
+ ++ LHA K LG++ FEA P FE
Sbjct: 254 PKNTIKGNGQFLHAAK---LGFDHPTTNERMTFEAPLPSSFE 292
>ref|NP_348732.1| (NC_003030) Predicted pseudouridylate synthase, YLYB B.subtilis
ortholog [Clostridium acetobutylicum]
gb|AAK80072.1|AE007712_8 (AE007712) Predicted pseudouridylate synthase, YLYB B.subtilis
ortholog [Clostridium acetobutylicum]
Length = 305
Score = 100 bits (250), Expect = 1e-20
Identities = 74/270 (27%), Positives = 123/270 (45%), Gaps = 41/270 (15%)
Query: 12 ENISHKKAKALIDSGLVSIGGKKLMVARK---------ELPKNTHFSVQKVEKP-SVIFE 61
ENIS + LI V + GK + K E+P N ++ P +++E
Sbjct: 26 ENISRSHIQDLIGKKKVFVNGKAVKSNYKLKSRDNVEFEIPDNEELKIEAENIPLDIVYE 85
Query: 62 DENILALFKPPFIESYDLASFFKGW---------------------ALLHRLDKETSGVV 100
D +I+ + K + + + G ++HR+DK+TSG+
Sbjct: 86 DRDIVVVNKAQGMVVHPAPGNYNGTLVNALLYHCKDLSGINGVLRPGIVHRIDKDTSGI- 144
Query: 101 LLVKENSEFHLKAKKAFKDRAVKKEYLALTQGII-EEEREINAPILTFKTTKAFSKISKK 159
L+V +N H K+ ++ + Y A+ +GII E+E ++ P+ + + K
Sbjct: 145 LVVAKNDAAHKNLANQLKEHSMNRVYRAVVEGIIKEDEGTVDKPLARHPVERVKIAVVKG 204
Query: 160 GQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSL--AKR 217
G+ AVT L+ TL++ ++TGRTHQIRVH+ +I H ++GD LY + +
Sbjct: 205 GRNAVTHYKVLERYRNSTLIECKLETGRTHQIRVHMAYIGHALVGDPLYGYKKQRFNLEG 264
Query: 218 LMLHAHKIALLG------YEFEAIAPKEFE 241
MLHA K+ + EFE AP F+
Sbjct: 265 QMLHAQKLGFIHPTKGKYMEFEREAPSHFQ 294
>ref|NP_655109.1| (NC_003995) PseudoU_synth_2, RNA pseudouridylate synthase [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 297
Score = 99.8 bits (247), Expect = 2e-20
Identities = 59/161 (36%), Positives = 90/161 (55%), Gaps = 8/161 (4%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQG-IIEEEREINAPILT 146
++ RLD++TSG++L+ K HL +K+ + +AVK+ Y A+ G ++E E I+API
Sbjct: 132 IVTRLDRDTSGLMLIAKNRFVHHLLSKQ-HQQKAVKRTYEAIVHGEMVEREGTIDAPIGR 190
Query: 147 FKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDT 206
+ + ++GQ AVT + N KT + + + TGRTHQIRVHL HI HP++GD
Sbjct: 191 KSDSIIERTVCEEGQRAVTHFRVIDSANHKTHVSLELDTGRTHQIRVHLAHIGHPLLGDN 250
Query: 207 LYNNEPSLAKRLMLHA------HKIALLGYEFEAIAPKEFE 241
LY + KR LH+ H I F A+ P + +
Sbjct: 251 LYGGKRDEMKRQALHSTSLTFYHPILEKEMSFAAMIPSDMQ 291
>ref|NP_623370.1| (NC_003869) Pseudouridylate synthase, 23S RNA-specific
[Thermoanaerobacter tengcongensis]
gb|AAM24974.1| (AE013131) Pseudouridylate synthase, 23S RNA-specific
[Thermoanaerobacter tengcongensis]
Length = 268
Score = 99.0 bits (245), Expect = 4e-20
Identities = 63/188 (33%), Positives = 97/188 (51%), Gaps = 24/188 (12%)
Query: 57 SVIFEDENILALFKPPFIESYDLASFFKGWAL------------------LHRLDKETSG 98
S+ +ED+ IL + KP + + + +G ++RLDK TSG
Sbjct: 58 SICYEDDEILIVDKPAGMVVHPTRRYREGTLANGVAYYFEKKGIKTLIRPVNRLDKGTSG 117
Query: 99 VVLLVKEN-SEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKIS 157
+V+ KE +++L+ K + K Y A+ G +E E I+ PI ++S
Sbjct: 118 IVIFAKEPFMQYYLQIVKP-----MSKFYYAIVNGKLEGEGIIDVPIKRKSFMTIEREVS 172
Query: 158 KKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKR 217
++G A+T LK + +LLK+ I TGRTHQIRVHL +I HPI+GD LY S +R
Sbjct: 173 EEGDRAITYYKSLKATEEFSLLKIKIATGRTHQIRVHLNYIGHPIVGDDLYGEPTSYIER 232
Query: 218 LMLHAHKI 225
LHA+++
Sbjct: 233 PALHAYRV 240
>ref|NP_214204.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
sp|O67638|YH58_AQUAE Hypothetical protein AQ_1758
pir||D70451 conserved hypothetical protein aq_1758 - Aquifex aeolicus
gb|AAC07603.1| (AE000754) hypothetical protein [Aquifex aeolicus]
Length = 316
Score = 98.6 bits (244), Expect = 5e-20
Identities = 72/243 (29%), Positives = 118/243 (47%), Gaps = 36/243 (14%)
Query: 13 NISHKKAKALIDSGLVSIGGKKLMVARKELPKNTHFSVQKVE------KP-----SVIFE 61
+ S K L+ GLV + G+++ ++L + + E KP ++I+E
Sbjct: 28 DFSRSYIKKLVKEGLVYVNGEEVRKPSRKLREGERVILHVPEPEPLDVKPENIPINIIYE 87
Query: 62 DENILALFKPPFIESYDLASFFKGW---------------------ALLHRLDKETSGVV 100
DE+I + KP + + + G ++HRLDKET+GV+
Sbjct: 88 DEDIAVVEKPCGLVVHPSPGYTSGTLVNALLYHIKDLSSIGGVERPGIVHRLDKETAGVM 147
Query: 101 LLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER-EINAPILTFKTTKAFSKISKK 159
++ K N+ H + F++R +K Y L +G+++++ I+ PI + + K+
Sbjct: 148 VIAKNNTA-HRNLVRQFQERKTEKFYKVLVKGLVKKDYGAIDTPIARHPVDRKRFWVRKE 206
Query: 160 GQEAVTIITPLKIINKK--TLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKR 217
G+EA+T LK K TLLKV I TGRTHQIRVH I HP++GD Y + S +
Sbjct: 207 GKEALTEYWVLKRYEKYEITLLKVKIHTGRTHQIRVHFASIGHPVLGDRTYGFKSSSVPK 266
Query: 218 LML 220
+L
Sbjct: 267 ELL 269
>ref|NP_471291.1| (NC_003212) similar to conserved hypothetical proteins [Listeria
innocua]
emb|CAC97187.1| (AL596170) similar to conserved hypothetical proteins [Listeria
innocua]
Length = 302
Score = 97.1 bits (240), Expect = 2e-19
Identities = 79/282 (28%), Positives = 131/282 (46%), Gaps = 46/282 (16%)
Query: 2 EKAYKILSVQENISHKKAKALIDSGLVSIGGK------KLMVA---RKELPKNTHFSVQK 52
E+ K+++ S + ++ +G +++ G+ K+ V R E + +
Sbjct: 15 ERVDKVIAEMMEKSRSAIQLMLKNGDITVNGELAKPNYKVQVGDEIRYEAREPEELEILA 74
Query: 53 VEKP-SVIFEDENILALFKPPFIESYDLASFFKGW---------------------ALLH 90
+ P + FED+++L + KP + + A G ++H
Sbjct: 75 EDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTLVNALLFHCDDLSGINGKIRPGIVH 134
Query: 91 RLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQG-IIEEEREINAPILTFKT 149
R+DK+TSG+ L+V +N H K KD+ +EY+AL G I+ ++ I API K
Sbjct: 135 RIDKDTSGL-LMVAKNDHAHESLAKQLKDKTSDREYIALVHGDIVHQKGTIEAPIGRAKE 193
Query: 150 TKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYN 209
+ + + G+EA T ++ + TL+ + TGRTHQIRVHLK+I HP+ GD Y
Sbjct: 194 DRQKMAVVRDGKEARTHFEVIERLPGYTLINCKLDTGRTHQIRVHLKYIGHPLAGDPKYG 253
Query: 210 NEPSL-AKRLMLHAHKIALLGYE---------FEAIAPKEFE 241
+ ++ LHA K LG++ FEA P FE
Sbjct: 254 PKNTIKGNGQFLHAAK---LGFDHPTTNERMTFEAPLPDSFE 292
>ref|NP_347897.1| (NC_003030) Pseudouridylate synthase family protein, yabo
B.subtilis ortholog [Clostridium acetobutylicum]
gb|AAK79237.1|AE007639_10 (AE007639) Pseudouridylate synthase family protein, yabo B.subtilis
ortholog [Clostridium acetobutylicum]
Length = 299
Score = 97.1 bits (240), Expect = 2e-19
Identities = 64/202 (31%), Positives = 106/202 (51%), Gaps = 21/202 (10%)
Query: 43 PKNTHFSVQKVEKPSVIFEDENILALFKPPFIESYDLASFFKGWA--------------- 87
P++ + +K++ ++++ED +I+ L KP + + ++ G
Sbjct: 69 PESQNVDPEKMDL-NIVYEDSDIIVLNKPANMIVHPTKNYQHGTLSNGLLYYFREKGENC 127
Query: 88 ---LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER-EINAP 143
L++RLD +TSG+VL+ K N H+ + K KKEY+A+ +G + + I+ P
Sbjct: 128 IVRLVNRLDMDTSGLVLVAK-NQFSHMALARDMKLDTFKKEYIAVVRGNLSSLKGTIDKP 186
Query: 144 ILTFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPII 203
I + I +GQE++T ++ +K+ ++TGRTHQIRVHL I +PII
Sbjct: 187 IYKEEEEPIRRTIDDRGQESITHFEVVERYKNADKVKLVLETGRTHQIRVHLSSIGNPII 246
Query: 204 GDTLYNNEPSLAKRLMLHAHKI 225
GD+LY E L KR LHA K+
Sbjct: 247 GDSLYGEESELIKRQALHAFKL 268
>ref|NP_216056.1| (NC_000962) hypothetical protein Rv1540 [Mycobacterium tuberculosis
H37Rv]
ref|NP_336044.1| (NC_002755) pseudouridine synthase, RluD-related protein
[Mycobacterium tuberculosis CDC1551]
sp|Q10786|Y04P_MYCTU Hypothetical protein Rv1540
pir||A70761 hypothetical protein Rv1540 - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA98322.1| (Z74020) hypothetical protein Rv1540 [Mycobacterium tuberculosis
H37Rv]
gb|AAK45858.1| (AE007025) pseudouridine synthase, RluD-related protein
[Mycobacterium tuberculosis CDC1551]
Length = 308
Score = 96.3 bits (238), Expect = 3e-19
Identities = 80/271 (29%), Positives = 122/271 (44%), Gaps = 52/271 (19%)
Query: 14 ISHKKAKALIDSGLVS------------IGGKKLMVARKELPKNTHFSVQKVEKPSVIFE 61
+S A AL + G V + G L V E P + +E ++++
Sbjct: 27 LSRTAAAALAEEGAVELNGVPAGKSDRLVSGALLQVRLPEAPAPLQNTPIDIEGMTILYS 86
Query: 62 DENILALFKPPFIESYDLASFFKGWA-------------------------LLHRLDKET 96
D++I+A+ KP + ++ GW ++HRLD T
Sbjct: 87 DDDIVAVDKPAAVAAHASV----GWTGPTVLGGLAAAGYRITTSGVHERQGIVHRLDVGT 142
Query: 97 SGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER-EINAPILTFKTTKAFSK 155
SGV ++V + + K+AFK R V K Y AL QG + I+API + +
Sbjct: 143 SGV-MVVAISERAYTVLKRAFKYRTVDKRYHALVQGHPDPSSGTIDAPIGRHRGHEWKFA 201
Query: 156 ISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLA 215
I+K G+ ++T L+ +LL V ++TGRTHQIRVH ++HP GD +Y +P LA
Sbjct: 202 ITKNGRHSLTHYDTLEAFVAASLLDVHLETGRTHQIRVHFAALHHPCCGDLVYGADPKLA 261
Query: 216 KRL-----MLHAHKIALL----GYEFEAIAP 237
KRL LHA +A G E ++P
Sbjct: 262 KRLGLDRQWLHARSLAFAHPADGRRVEIVSP 292
>ref|NP_608079.1| (NC_003485) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
gb|AAL98578.1| (AE010114) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
Length = 272
Score = 95.9 bits (237), Expect = 3e-19
Identities = 68/192 (35%), Positives = 109/192 (56%), Gaps = 18/192 (9%)
Query: 52 KVEKPSVIFEDENILALFKPPFIESY-----DLA-----SFFKGWA--LLHRLDKETSGV 99
+ EK + ++EDE+I+ + KP ++++ +LA S + G ++HRLDKETSG
Sbjct: 54 QAEKVTCLYEDEHIIIVNKPEGMKTHGNDPTELALLNHVSAYTGQTCYVVHRLDKETSGA 113
Query: 100 VLLVKENSEFHLKA-KKAFKDRAVKKEYLALTQGIIEEER-EINAPILTFKTTKAFSKIS 157
+L K + F L + + R + +EYLAL G ++ R + PI + + +
Sbjct: 114 ILFAK--TPFILPILNRLLEKRDIHREYLALVHGSLDSPRVTYHHPIGRHRHDRRKRVVD 171
Query: 158 K-KGQEAVTIITPLKIINKK-TLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLA 215
G++A+T +T +K +K +LL ++TGRTHQIRVHL H H + GD LY+N
Sbjct: 172 PINGKKAITEVTLVKNFHKTASLLNCQLQTGRTHQIRVHLAHQGHVLFGDPLYSNGKKDC 231
Query: 216 KRLMLHAHKIAL 227
RLMLHA+++ L
Sbjct: 232 ARLMLHAYQLRL 243
>ref|NP_270003.1| (NC_002737) conserved hypothetical protein [Streptococcus pyogenes]
[Streptococcus pyogenes M1 GAS]
gb|AAK34724.1| (AE006626) conserved hypothetical protein [Streptococcus pyogenes
M1 GAS]
Length = 272
Score = 95.5 bits (236), Expect = 4e-19
Identities = 68/192 (35%), Positives = 109/192 (56%), Gaps = 18/192 (9%)
Query: 52 KVEKPSVIFEDENILALFKPPFIESY-----DLA-----SFFKGWA--LLHRLDKETSGV 99
+ EK + ++EDE+I+ + KP ++++ +LA S + G ++HRLDKETSG
Sbjct: 54 QAEKVTCLYEDEHIIIVNKPEGMKTHGNDPTELALLNHVSAYTGQTCYVVHRLDKETSGA 113
Query: 100 VLLVKENSEFHLKA-KKAFKDRAVKKEYLALTQGIIEEER-EINAPILTFKTTKAFSKIS 157
+L K + F L + + R + +EYLAL G ++ R + PI + + +
Sbjct: 114 ILFAK--TPFILPILNRLLEKRDIHREYLALVHGSLDSPRVTYHHPIGRHRHDRRKRVVD 171
Query: 158 K-KGQEAVTIITPLKIINKK-TLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLA 215
G++A+T +T +K +K +LL ++TGRTHQIRVHL H H + GD LY+N
Sbjct: 172 PINGKKAITEVTLVKNFHKTASLLTCQLQTGRTHQIRVHLAHQGHVLFGDPLYSNGKKDC 231
Query: 216 KRLMLHAHKIAL 227
RLMLHA+++ L
Sbjct: 232 ARLMLHAYQLRL 243
>ref|NP_078147.1| (NC_002162) pseudouridine synthase (uracil hydrolase) [Ureaplasma
urealyticum]
pir||H82907 pseudouridine synthase (uracil hydrolase) UU313 [imported] -
Ureaplasma urealyticum
gb|AAF30722.1|AE002128_10 (AE002128) pseudouridine synthase (uracil hydrolase) [Ureaplasma
urealyticum]
Length = 299
Score = 95.1 bits (235), Expect = 6e-19
Identities = 78/275 (28%), Positives = 122/275 (44%), Gaps = 41/275 (14%)
Query: 6 KILSVQENISHKKAKALIDSGLVSIGGKKLMVARKELPKNTHFSVQK------------- 52
K L N S K ++D L+ + + A L KN + +
Sbjct: 15 KFLVENTNYSRTLIKKMLDQNLILVNDNFISKASYLLKKNDYIQINNELPIVQEQKKLLP 74
Query: 53 -VEKPSVIFEDENILALFKPP--------FIESYDLASFFK------GWALLHRLDKETS 97
V +IFED+++L + KP F E LA+ K + + HRLDK TS
Sbjct: 75 FVYSLEIIFEDQDLLIVNKPSGMLVHPTSFHEQNTLANALKYYLKTDNFYITHRLDKNTS 134
Query: 98 GVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER---EINAPILTFKTTKAFS 154
G++++ K + ++ F + ++K Y A+ + + IN PI K
Sbjct: 135 GLIIICKNQIALN-SLQQQFMQKTIRKSYYAIVHNRFDMQHLHFMINEPIGHSYQDKLRM 193
Query: 155 KI--SKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYN-NE 211
K SK +EA++I+ L+ L++V I TGRTHQIRVH+++INHP+ D LY ++
Sbjct: 194 KTGNSKNTKEAISIVKVLEQYKNTALVEVSIITGRTHQIRVHMRYINHPVYNDPLYGISK 253
Query: 212 PSLAKRLMLHA------HKIALLGYEFEAIAPKEF 240
+ LH+ H EF+ PKEF
Sbjct: 254 HTTEYEQYLHSFYISFNHPSTNKKVEFKINMPKEF 288
>ref|NP_269039.1| (NC_002737) conserved hypothetical protein [Streptococcus pyogenes]
[Streptococcus pyogenes M1 GAS]
gb|AAK33760.1| (AE006533) conserved hypothetical protein [Streptococcus pyogenes
M1 GAS]
Length = 296
Score = 94.7 bits (234), Expect = 8e-19
Identities = 73/255 (28%), Positives = 123/255 (47%), Gaps = 34/255 (13%)
Query: 6 KILSVQENISHKKAKALIDSGLVSIGGKKLM---------VARKELPKNTHFSVQKVEKP 56
K L+ +S +A I GLV + G++ V ELPK Q P
Sbjct: 14 KALADLSPLSRGQANDQIKQGLVLVNGQQKKAKYTVQAGDVICFELPKEEVLEYQAQNIP 73
Query: 57 -SVIFEDENILALFKPPFIESYDLASFFKGW---------------------ALLHRLDK 94
+I+ED+ + + KP + + A G ++HR+DK
Sbjct: 74 LDIIYEDDALAIINKPQGMVVHPSAGHPSGTMVNALMYHIKDLSSINGVVRPGIVHRIDK 133
Query: 95 ETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEERE-INAPILTFKTTKAF 153
+TSG++++ K ++ A++ ++++K YLA+ G + +R I API + +
Sbjct: 134 DTSGLLMVAKTDAAHQALAEELKAKKSLRK-YLAIVHGNLPNDRGMIEAPIGRSEKDRKK 192
Query: 154 SKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPS 213
++ KG+EAVT T L+ +L+++ ++TGRTHQIRVH+ +I HP+ GD LY +
Sbjct: 193 QAVTAKGKEAVTRFTVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDPLYGPRKT 252
Query: 214 LAKR-LMLHAHKIAL 227
L+ LHA + L
Sbjct: 253 LSGHGQFLHAKTLGL 267
>ref|NP_243713.1| (NC_002570) BH2847~unknown conserved protein [Bacillus halodurans]
dbj|BAB06566.1| (AP001516) BH2847~unknown conserved protein [Bacillus halodurans]
Length = 302
Score = 94.4 bits (233), Expect = 1e-18
Identities = 60/189 (31%), Positives = 106/189 (55%), Gaps = 20/189 (10%)
Query: 58 VIFEDENILALFKP---PFIESYD---------LASFFKGWAL------LHRLDKETSGV 99
VI+E+++ L + KP P I S D L ++F+ + ++RLDK+TSG+
Sbjct: 86 VIYENDHYLVVNKPAGVPTIPSRDHPQGTLANGLLNYFQRQKMAATFHAVNRLDKDTSGL 145
Query: 100 VLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEE-EREINAPILTFKTTKAFSKISK 158
+++ K H + K + +K+ Y+A+ QG IE+ E I API + + ++ +
Sbjct: 146 LIVAKHQLA-HDQLSKQQRQGNIKRTYMAIVQGEIEQQEGTITAPIARKEESLITREVRE 204
Query: 159 KGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKRL 218
GQ A+T + +N+ T+++V ++TGRTHQIRVH ++ +P+ GD LY E +R
Sbjct: 205 DGQLAITHFKVIDRLNQGTIVQVQLETGRTHQIRVHFSYLGYPLFGDDLYGGERKGIERQ 264
Query: 219 MLHAHKIAL 227
LH+ ++ +
Sbjct: 265 ALHSTELTI 273
>ref|NP_281244.1| (NC_002163) putative ribosomal pseudouridine synthase
[Campylobacter jejuni]
pir||A81418 pseudouridylate synthase (EC 4.2.1.70) rRNA-specific Cj0022c
[imported] - Campylobacter jejuni (strain NCTC 11168)
emb|CAB72515.1| (AL139074) putative ribosomal pseudouridine synthase [Campylobacter
jejuni]
Length = 300
Score = 94.0 bits (232), Expect = 1e-18
Identities = 79/227 (34%), Positives = 112/227 (48%), Gaps = 21/227 (9%)
Query: 2 EKAYKILSVQENISHKKAKALIDSGLVSIGGKKLMVARKELPKNTHFSVQKVEKPSV--I 59
+KA+++L IS +A+ LID + G + K L V + V +
Sbjct: 13 KKAFQVLMENLKISINEAQKLIDKKRLFCDGILVEEKNKILNGLVELIVYENNPKGVEIV 72
Query: 60 FEDENILALFKPPFIES--------YDLAS-----FFKGWALLHRLDKETSGVVLLVKEN 106
FE+E+ L K I S Y L+ + K + HRLDKETSG++L+ K N
Sbjct: 73 FENEDFAILEKESGILSHPNGRHCKYSLSDEIWHLWGKEACVAHRLDKETSGLILIAK-N 131
Query: 107 SEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKT---TKAFSKISKKGQEA 163
+ + K F+ + V+KEYLAL G IEE ++ I K K +I K+G++A
Sbjct: 132 KKAQIDLKSLFEKKLVQKEYLALAHGKIEENFIVDKAINLTKNYDDVKTRMQICKEGKQA 191
Query: 164 VTIITPLKIINK--KTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLY 208
+T L+ K TLL TGR HQIRVHL + NH I+GD LY
Sbjct: 192 ITEFEILEYFPKINATLLLCKPLTGRQHQIRVHLHYKNHTILGDPLY 238
>ref|NP_563038.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB81828.1| (AP003193) conserved hypothetical protein [Clostridium perfringens]
Length = 298
Score = 93.6 bits (231), Expect = 2e-18
Identities = 66/202 (32%), Positives = 97/202 (47%), Gaps = 26/202 (12%)
Query: 58 VIFEDENILALFKPPFIESYDLASFFKGWA------------------LLHRLDKETSGV 99
+++ED +IL L K PF+ + S G L+ RLD TSG+
Sbjct: 81 IVYEDSDILVLNKKPFMVVHPTRSHPNGTLANGILYYFKESNQDCIVRLVSRLDMNTSGL 140
Query: 100 VLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEE-EREINAPILTFKTTKAFSKISK 158
+++ K N H+ K +K YLA+ G +EE E IN PI + +
Sbjct: 141 IIIGK-NQYAHMVLSNEMKTDKFQKRYLAIVHGNLEEKEGTINRPIYRPAEDTIKRVVDE 199
Query: 159 KGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNE-PSLAKR 217
+GQE++T ++ N L++ ++TGRTHQIRVHL + HPI GD+LY E R
Sbjct: 200 RGQESITHYKVIESYNGADLVECLLETGRTHQIRVHLSSLGHPIFGDSLYGTEDEDFISR 259
Query: 218 LMLHAHKIALLGYEFEAIAPKE 239
LHA+ G +F + KE
Sbjct: 260 QALHAY-----GLDFYSPKTKE 276
>ref|NP_519162.1| (NC_003295) PROBABLE RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE
C PROTEIN [Ralstonia solanacearum]
emb|CAD14743.1| (AL646062) PROBABLE RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE
C PROTEIN [Ralstonia solanacearum]
Length = 331
Score = 93.2 bits (230), Expect = 2e-18
Identities = 57/155 (36%), Positives = 85/155 (54%), Gaps = 17/155 (10%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEERE-INAPILT 146
L+HRLD+ETSGV+LL K+ S + + ++ + K Y A +G+ +R+ I AP+
Sbjct: 140 LVHRLDRETSGVLLLAKKRSAL-VALHEQIREGQLDKRYFAAVKGVWPHQRQHIKAPLFK 198
Query: 147 FKTTKAFSKISKK--GQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIG 204
+ T + ++ + GQ + T+ + + TLL+ +KTGRTHQIRVHL H PI+G
Sbjct: 199 YSTPEGERRVRVQADGQPSHTVFNRVGVFGPYTLLEAELKTGRTHQIRVHLAHAGFPILG 258
Query: 205 DTLY------------NNEPSLAKRLMLHAHKIAL 227
D Y N P LA R+ LHAH + L
Sbjct: 259 DDKYGDFALNKALSRANASPRLA-RMFLHAHTLRL 292
>ref|NP_465768.1| (NC_003210) similar to putative ribosomal large subunit
pseudouridine synthase [Listeria monocytogenes EGD-e]
emb|CAD00322.1| (AL591982) similar to putative ribosomal large subunit
pseudouridine synthase [Listeria monocytogenes]
Length = 289
Score = 93.2 bits (230), Expect = 2e-18
Identities = 64/144 (44%), Positives = 86/144 (59%), Gaps = 9/144 (6%)
Query: 89 LHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLAL---TQGIIEEEREINAPIL 145
+HRLD+ TSG+VL K N ++RA+ + YLA T G++ + IN PI
Sbjct: 129 VHRLDQTTSGLVLFAK-NKLAIAGLSWQMENRAIHRTYLAAVDGTWGLVMQT--INKPIG 185
Query: 146 TFKTTKAFSKISKKGQEAVTIITPLKIINKK--TLLKVGIKTGRTHQIRVHLKHINHPII 203
+ + +IS GQ AVT + L+ N+K +L++ I+TGRTHQIRVHL I HPII
Sbjct: 186 EDRHHGSRRQISPYGQPAVTHVKVLENDNEKNTSLVECQIETGRTHQIRVHLSGIGHPII 245
Query: 204 GDTLYNNEPSLAKRLMLHAHKIAL 227
GDTLY P A R+MLHA K+ L
Sbjct: 246 GDTLYGGSPR-ANRIMLHAEKLHL 268
>ref|NP_470305.1| (NC_003212) similar to ribosomal large subunit pseudouridine
synthetase [Listeria innocua]
emb|CAC96199.1| (AL596167) similar to ribosomal large subunit pseudouridine
synthetase [Listeria innocua]
Length = 296
Score = 93.2 bits (230), Expect = 2e-18
Identities = 64/190 (33%), Positives = 97/190 (50%), Gaps = 20/190 (10%)
Query: 58 VIFEDENILALFKPPFIESY--------DLASFFKGWA----------LLHRLDKETSGV 99
V+FED+ +L + KP + S +A+F KG ++ RLD+ETSG+
Sbjct: 82 VVFEDDFLLIINKPAGMASIPSQYHPTGSVANFVKGHYENQGLTSAIHIVTRLDRETSGL 141
Query: 100 VLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER-EINAPILTFKTTKAFSKISK 158
+L+ K N H + + +K+ Y A T G +EEE I API + ++
Sbjct: 142 MLIAK-NRYAHARLSSFLQQGLLKRRYQAFTSGTLEEEAGSIEAPIGRKDVSIMERFVTP 200
Query: 159 KGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKRL 218
+G+ A T L N L + ++TGRTHQIRVH +I HP+IGD +Y + L KR
Sbjct: 201 EGKYAKTNYEVLMRYNGFDHLAIQLETGRTHQIRVHFSYIGHPLIGDDMYGGDQELLKRQ 260
Query: 219 MLHAHKIALL 228
LH+ + L+
Sbjct: 261 ALHSCHLHLV 270
>ref|NP_228748.1| (NC_000853) ribosomal large subunit pseudouridine synthase C
[Thermotoga maritima]
pir||D72316 ribosomal large subunit pseudouridine synthase C - Thermotoga
maritima (strain MSB8)
gb|AAD36021.1|AE001757_14 (AE001757) ribosomal large subunit pseudouridine synthase C
[Thermotoga maritima]
Length = 304
Score = 93.2 bits (230), Expect = 2e-18
Identities = 62/172 (36%), Positives = 90/172 (52%), Gaps = 31/172 (18%)
Query: 55 KPSVIFEDENILALFKPPFI-----ESYDLASFFKGWA-----------LLHRLDKETSG 98
K V++ED++ L L KPP I + +A+ +G L+HRLDKETSG
Sbjct: 84 KLDVLYEDDHYLVLNKPPNIAIHPGKGVHVATLIEGLLYYGQEKGFSPFLVHRLDKETSG 143
Query: 99 VVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKISK 158
+ L+V +N E + FK R ++KEY+ L +G+ E +I P+
Sbjct: 144 L-LVVAKNREAARILTELFKGRNIEKEYVTLVRGVPENNMKITIPL-------------- 188
Query: 159 KGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNN 210
GQEAV+ I +K + +LL+V I TGR HQIR HL I P++GD Y +
Sbjct: 189 DGQEAVSEIVSVKPLKDVSLLRVKIHTGRKHQIRRHLSQIGFPVVGDDTYGD 240
>ref|NP_240167.1| (NC_002528) ribosomal large subunit pseudouridine synthase C
[Buchnera sp. APS]
sp|P57430|RLUC_BUCAI Ribosomal large subunit pseudouridine synthase C (Pseudouridylate
synthase) (Uracil hydrolyase)
dbj|BAB13053.1| (AP001119) ribosomal large subunit pseudouridine synthase C
[Buchnera sp. APS]
Length = 314
Score = 92.4 bits (228), Expect = 4e-18
Identities = 65/206 (31%), Positives = 104/206 (49%), Gaps = 28/206 (13%)
Query: 44 KNTHFSVQKVEK--PSVIFEDENILALFKPPFIE-------SYDLASFF-------KGWA 87
KNT F + +++ED ++L + KP I ++ + +F K
Sbjct: 78 KNTFFPLNHSTNLLNRILYEDSHLLIINKPSGIAVHGGSGLNFGVIEYFRKLRPLNKFLE 137
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEE-REINAPILT 146
L+HR+D++TSGV++L K+ + + + +++ +KKEY+AL G+ + ++I+ P+L
Sbjct: 138 LVHRIDRDTSGVLILAKKRTSL-VSLHEQLREKKIKKEYIALVHGLWPDHIKKISEPLLK 196
Query: 147 --FKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIG 204
FK + I KKG+ + T K + TLL + KTGRTHQIRVH H HPI
Sbjct: 197 IQFKNKQKMVLIDKKGKPSETYFQIKKKFSSSTLLSIIPKTGRTHQIRVHALHAGHPIFF 256
Query: 205 DTLYNNEPSLA--------KRLMLHA 222
D Y A RL+LH+
Sbjct: 257 DKRYGKNDLDADIKNNHKINRLLLHS 282
>ref|NP_607042.1| (NC_003485) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
gb|AAL97541.1| (AE010018) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
Length = 296
Score = 92.4 bits (228), Expect = 4e-18
Identities = 74/255 (29%), Positives = 122/255 (47%), Gaps = 34/255 (13%)
Query: 6 KILSVQENISHKKAKALIDSGLVSIGGKKLM---------VARKELPKNTHFSVQKVEKP 56
K L+ +S +A I GLV + G++ V ELPK Q P
Sbjct: 14 KALADLSPLSRGQANDQIKQGLVLVNGQQKKAKYTVQAGDVICFELPKEEVLEYQAQNIP 73
Query: 57 -SVIFEDENILALFKPPFIESYDLA------------------SFFKGWA---LLHRLDK 94
+I+ED+ + + KP + + A S G ++HR+DK
Sbjct: 74 LDIIYEDDALAIINKPQGMVVHPSAGHPSETMVNALMYHIKDLSSINGVVRPGIVHRIDK 133
Query: 95 ETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEERE-INAPILTFKTTKAF 153
+TSG++++ K ++ H + K + ++YLA+ G + +R I API + +
Sbjct: 134 DTSGLLMVAKTDAA-HQALTEELKAKKSLRKYLAIVHGNLPNDRGMIEAPIGRSEKDRKK 192
Query: 154 SKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPS 213
++ KG+EAVT T L+ +L+++ ++TGRTHQIRVH+ +I HP+ GD LY +
Sbjct: 193 QAVTAKGKEAVTRFTVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDPLYGPRKT 252
Query: 214 LAKR-LMLHAHKIAL 227
L+ LHA + L
Sbjct: 253 LSGHGQFLHAKTLGL 267
>ref|NP_072871.1| (NC_000908) sfhB protein, putative [Mycoplasma genitalium]
sp|P47451|Y209_MYCGE Hypothetical protein MG209
pir||A64223 probable pseudouridine synthase - Mycoplasma genitalium
gb|AAC71427.1| (U39700) sfhB protein, putative [Mycoplasma genitalium]
Length = 308
Score = 91.7 bits (226), Expect = 6e-18
Identities = 76/251 (30%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 13 NISHKKAKALIDSGLVSIGGK-----KLMVARKELPK------NTHFSVQKVE----KPS 57
N+S K LI +G + + K L+VA+ ++ K T + VE K
Sbjct: 22 NLSRVKVVKLIMNGQIKVNEKLTFKNSLIVAKDDVIKVEIHDETTSDFITSVEPYNLKLE 81
Query: 58 VIFEDENILALFKPPFIESY-----DLASFFKGWA---------LLHRLDKETSGVVLLV 103
V+FED++++ + KP + ++ + AS L+HRLD++TSG +++
Sbjct: 82 VLFEDKDLMVINKPSGLLTHPTTFNEKASLLAACIFHNNKNPVYLVHRLDRDTSGAIVVC 141
Query: 104 KENSEFHLKAKKAFKDRAVKKEYLALTQGIIEE-EREINAPILTFKTTKAFSKISKKGQE 162
K + L + ++R +K+ Y+AL INAP+ K KI++ +
Sbjct: 142 KNQASL-LNLQNQLQNRTLKRYYVALVHFPFNALTGSINAPLARVNNNKVMFKIAQTAK- 199
Query: 163 AVTIITPLKIIN---KKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLY--NNEPSLAKR 217
A IT K+IN K L+ + + TGRTHQIRVHLK I HP+ D LY +E +
Sbjct: 200 AKQAITKFKVINQNEKAALISLELLTGRTHQIRVHLKFIQHPVYNDPLYGIKSEKKDSYG 259
Query: 218 LMLHAHKIALL 228
LHA++I +
Sbjct: 260 QFLHANRICFI 270
>ref|NP_232134.1| (NC_002505) ribosomal large subunit pseudouridine synthase A
[Vibrio cholerae]
pir||G82068 ribosomal large subunit pseudouridine synthase A VC2505 [imported]
- Vibrio cholerae (group O1 strain N16961)
gb|AAF95647.1| (AE004320) ribosomal large subunit pseudouridine synthase A [Vibrio
cholerae]
Length = 245
Score = 91.3 bits (225), Expect = 8e-18
Identities = 64/197 (32%), Positives = 104/197 (52%), Gaps = 18/197 (9%)
Query: 46 THFSVQKVEKPSVIFEDENILALFKPPF--------IESYD-----LASFFKGWALLHRL 92
T ++ K VI+EDE+I+A KP +E YD L + ++HRL
Sbjct: 4 TEYNPPKDPWIDVIYEDEHIIAANKPSGLLSVPGRPVEHYDSMWARLVDYCPDVKVVHRL 63
Query: 93 DKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEE-EREINAPILTFKTTK 151
D TSG++L K KK F+ R K Y A G++E+ E E+N P+ +
Sbjct: 64 DMSTSGLILFAK-GKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCDWPNR 122
Query: 152 AFSKIS-KKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNN 210
K+ ++G++++T +K K T++++ TGR+HQ+RVH++ + HPI+GD LY
Sbjct: 123 PKQKVCFEEGRDSLTRYQVVKREEKTTVVRLIPITGRSHQLRVHMQSLGHPIVGDDLYAP 182
Query: 211 EPSL--AKRLMLHAHKI 225
++ A RL LHA ++
Sbjct: 183 PEAVEFADRLQLHAAEL 199
>ref|NP_207145.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
sp|O25114|Y347_HELPY Hypothetical protein HP0347
pir||C64563 conserved hypothetical protein HP0347 - Helicobacter pylori
(strain 26695)
gb|AAD07404.1| (AE000551) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 298
Score = 90.9 bits (224), Expect = 1e-17
Identities = 67/163 (41%), Positives = 90/163 (55%), Gaps = 24/163 (14%)
Query: 90 HRLDKETSGVVLLVKE-NSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILT-- 146
HRLD ETSG+VL K S LKA F + VKK YLAL G++E+ +I+ PILT
Sbjct: 116 HRLDYETSGLVLAGKTLQSVKDLKA--LFMQKKVKKTYLALAHGLVEKSMKIDKPILTPQ 173
Query: 147 --FKTTKAFSKISKKGQEAVTIITPLKI--INKKTLLKVGIKTGRTHQIRVHLKHINHPI 202
K SKIS G++++T++ PL +LLK+ TGRTHQIR+HL ++H I
Sbjct: 174 NIQKDLHIRSKISPLGKQSITLVEPLSYNPFLDISLLKITPLTGRTHQIRLHLSSVDHRI 233
Query: 203 IGDTLYN------------NEPSLAKRLMLHAHKIALLGYEFE 233
+G+ LY + A LMLHA A L +EF+
Sbjct: 234 VGEGLYGVADENAREYLQLKRENNAPLLMLHA---ASLEFEFK 273
>ref|NP_626332.1| (NC_003888) putative ribosomal large subunit pseudouridine synthase
[Streptomyces coelicolor A3(2)]
pir||T34943 probable ribosomal large subunit pseudouridine synthase -
Streptomyces coelicolor
emb|CAB51982.1| (AL109663) putative ribosomal large subunit pseudouridine synthase
[Streptomyces coelicolor A3(2)]
Length = 314
Score = 90.9 bits (224), Expect = 1e-17
Identities = 71/257 (27%), Positives = 112/257 (42%), Gaps = 43/257 (16%)
Query: 2 EKAYKILSVQENISHKKAKALIDSGLVSI------------GGKKLMVARKELPKNTHFS 49
E+ +S S KA L +G V + GG L V + P
Sbjct: 19 ERVDAAISRMFGFSRTKAAELAAAGKVQVDGSVVGKSERVHGGAWLEVEMPQAPAPVQVV 78
Query: 50 VQKVEKPSVIFEDENILALFKPPFIESYDLASFFKGWA---------------------- 87
+ VE ++ +DE+++ + KP + ++ GW+
Sbjct: 79 AEPVEGMEIVHDDEDVVVVVKPVGVAAHPSP----GWSGPTVIGGLAAAGYRVSTSGAAE 134
Query: 88 ---LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER-EINAP 143
++HRLD TSG++ + K + K+ FK+R V K Y L QG + I+AP
Sbjct: 135 RQGIVHRLDVGTSGLMAVAKSERAY-TSLKRQFKERTVDKRYHTLVQGHPDPTSGTIDAP 193
Query: 144 ILTFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPII 203
I ++ +G+ +VT ++ +LL V ++TGRTHQIRVH+ HP +
Sbjct: 194 IGRHPQHDYKWAVTAEGKPSVTHYDLIEAFRAASLLDVKLETGRTHQIRVHMAAHRHPCV 253
Query: 204 GDTLYNNEPSLAKRLML 220
GD Y +P+LAKRL L
Sbjct: 254 GDLTYGADPTLAKRLRL 270
>ref|NP_246658.1| (NC_002663) SfB [Pasteurella multocida]
sp|Q9CKA6|RLUD_PASMU Ribosomal large subunit pseudouridine synthase D (Pseudouridylate
synthase) (Uracil hydrolyase)
gb|AAK03803.1| (AE006208) SfB [Pasteurella multocida]
Length = 324
Score = 90.9 bits (224), Expect = 1e-17
Identities = 61/228 (26%), Positives = 106/228 (45%), Gaps = 32/228 (14%)
Query: 15 SHKKAKALIDSGLVSIGGKKLMVARK------------ELPKNTHFSVQKVEKPSVIFED 62
S + K I+ LV + G + V R E+ +T F + + ++++ED
Sbjct: 31 SRSRLKTWIEQNLVHVNGDVVNVPRAKVYGGEQIEIVVEIDDDTRFEPENLPL-NIVYED 89
Query: 63 ENILALFKPPFIESYDLASFFKGWAL------------------LHRLDKETSGVVLLVK 104
++IL + KP + A G L +HRLDK+T+G++++ K
Sbjct: 90 DDILVINKPKDFVVHPGAGNASGTVLNALLYHYPAIAEVPRAGIVHRLDKDTTGLMVIAK 149
Query: 105 ENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKISKKGQEAV 164
K + + R + +EY A+ GI+ + ++ P+ T + + G+ AV
Sbjct: 150 -TIPAQTKLVRDLQKRKITREYEAIACGIMTKGGMVDQPMARHPTKRTHMAVHPMGKPAV 208
Query: 165 TIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEP 212
T ++ T L++ ++TGRTHQIRVH+ HI HP++GD Y P
Sbjct: 209 THYRIMERFRNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQTYGGRP 256
>ref|NP_219609.1| (NC_000117) predicted pseudouridine synthetase family [Chlamydia
trachomatis]
pir||A71557 probable pseudouridine synthetase - Chlamydia trachomatis
(serotype D, strain UW3/Cx)
gb|AAC67697.1| (AE001284) predicted pseudouridine synthetase family [Chlamydia
trachomatis]
Length = 303
Score = 90.9 bits (224), Expect = 1e-17
Identities = 71/205 (34%), Positives = 101/205 (48%), Gaps = 27/205 (13%)
Query: 41 ELPKNTHFSVQKVE--KPSVIFEDENILALFKPPFIESYDLASFFKGWALLHRLDKETSG 98
+L S+Q +E P +++EDE++ KP S DLA L+HRLD++TSG
Sbjct: 52 KLQPGDRVSLQIIEHSSPQLLWEDEHLCIYNKPAKQTSEDLAHQLNVH-LVHRLDRDTSG 110
Query: 99 VVLLVKENSEFHLKAK----KAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFS 154
+L K H KA + FK+R + K Y+AL G +E + I+T T +
Sbjct: 111 CILFAK-----HAKASSLITQLFKNREIDKRYIALVFGQPRQE----SGIITTYTAPCYR 161
Query: 155 KIS---------KKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGD 205
+I G+ +T L K TLL TGRTHQIR+H+K I HPI+GD
Sbjct: 162 RIGAVLFGNTDQNSGKITITKWEILTRYPKYTLLLCRPVTGRTHQIRLHMKTIGHPIVGD 221
Query: 206 TLYNN--EPSLAKRLMLHAHKIALL 228
Y N +P R +LHA +A +
Sbjct: 222 VDYGNQEQPKNVVRTLLHAASLAFI 246
>ref|NP_601339.1| (NC_003450) COG0564:Pseudouridylate synthases, 23S RNA-specific
[Corynebacterium glutamicum]
dbj|BAB99531.1| (AP005280) Pseudouridylate synthases, 23S RNA-specific
[Corynebacterium glutamicum ATCC 13032]
Length = 310
Score = 90.9 bits (224), Expect = 1e-17
Identities = 53/135 (39%), Positives = 81/135 (59%), Gaps = 2/135 (1%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEE-EREINAPILT 146
++ RLD TSGV ++V + + K+AF+DR V K Y AL QG + I API
Sbjct: 137 IVQRLDVGTSGV-MVVAASERGYTVLKRAFRDRTVDKTYHALVQGHPDPLTGTIEAPIGR 195
Query: 147 FKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDT 206
+ ++ +G+ AVT L+ + TLLK+ ++TGRTHQIRVH ++HP GD
Sbjct: 196 HPSAGWRFAVTTEGKHAVTHYETLEAFQEATLLKIHLETGRTHQIRVHFSALHHPCCGDP 255
Query: 207 LYNNEPSLAKRLMLH 221
+Y ++P+L++RL L+
Sbjct: 256 MYGSDPALSERLGLN 270
>emb|CAA70352.1| (Y09142) product homologous to E.coli YfiI [Borrelia burgdorferi]
Length = 309
Score = 90.5 bits (223), Expect = 1e-17
Identities = 66/198 (33%), Positives = 104/198 (52%), Gaps = 28/198 (14%)
Query: 57 SVIFEDENILALFKPPFIESYDLASFFKGWA-----------------------LLHRLD 93
++I+ED N++ L KP I S+ S + ++HRLD
Sbjct: 85 AIIYEDSNVIVLNKPQGILSHPGISHWDDTVVNFLLYHIKSLKINFNEEKIRPGIVHRLD 144
Query: 94 KETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEE-REINAPILTFK-TTK 151
K+TSGV++ K S A++ FKD+ + K Y+A+ +G I + I K K
Sbjct: 145 KDTSGVLICAKNISTLRFLAQQ-FKDKRINKVYIAIVKGNFNSFFGSIESFIDRDKHNRK 203
Query: 152 AFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNN- 210
FS +G++A+T L + +LL + KTGRTHQ+RVH+K++N PI+GD +Y
Sbjct: 204 KFSVSKDRGKKALTEYRLLLNFGEYSLLALKPKTGRTHQLRVHMKYLNFPILGDEVYGRV 263
Query: 211 EPSLAK-RLMLHAHKIAL 227
+ SL K LMLH++K+ +
Sbjct: 264 DGSLEKITLMLHSYKLEI 281
>ref|NP_345413.1| (NC_003028) ribosomal large subunit pseudouridine synthase D
[Streptococcus pneumoniae TIGR4]
gb|AAK75053.1| (AE007398) ribosomal large subunit pseudouridine synthase D
[Streptococcus pneumoniae TIGR4]
Length = 295
Score = 90.1 bits (222), Expect = 2e-17
Identities = 74/275 (26%), Positives = 126/275 (44%), Gaps = 40/275 (14%)
Query: 6 KILSVQENISHKKAKALIDSGLVSIGG--KKLMVARKE-------LPKNTHFSVQKVEKP 56
K LS +S A I SG V + G KK +E +P+ + P
Sbjct: 14 KALSDLSELSRSLANEQIKSGQVLVNGQVKKAKYTVQEGDVVTYHVPEPEVLEYVAEDLP 73
Query: 57 -SVIFEDENILALFKPPFIESYDLASFFKGW---------------------ALLHRLDK 94
++++DE++ + KP + + A G ++HR+DK
Sbjct: 74 LEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDK 133
Query: 95 ETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEERE-INAPILTFKTTKAF 153
+TSG++++ K N + HL + KD+ ++Y A+ G + +R I API + +
Sbjct: 134 DTSGLLMIAK-NDDAHLALAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK 192
Query: 154 SKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPS 213
++ KG+ AVT L+ +L+++ ++TGRTHQIRVH+ +I HP+ GD +Y +
Sbjct: 193 QAVTAKGKPAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVYGPRKT 252
Query: 214 L-AKRLMLHAHKIALL------GYEFEAIAPKEFE 241
L LHA + EF+A P+ F+
Sbjct: 253 LKGHGQFLHAKTLGFTHPRTGKTLEFKADIPEIFK 287
>ref|NP_301874.1| (NC_002677) putative pseudouridine synthase [Mycobacterium leprae]
emb|CAB39580.1| (AL049478) putative pseudouridine synthase [Mycobacterium leprae]
emb|CAC31581.1| (AL583921) putative pseudouridine synthase [Mycobacterium leprae]
Length = 308
Score = 90.1 bits (222), Expect = 2e-17
Identities = 69/226 (30%), Positives = 106/226 (46%), Gaps = 36/226 (15%)
Query: 32 GKKLMVARKELPKNTHFSVQKVEKPSVIFEDENILALFKPPFIESYDLASFFKGWA---- 87
G L V E P + +E ++++ D++I+A+ KP + ++ GWA
Sbjct: 57 GAWLQVRLCEAPAPLENTPVDIEDMTILYSDDDIVAVDKPAAVAAHASV----GWAGPTV 112
Query: 88 ---------------------LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEY 126
++HRLD TSGV +LV + + K+AFK R V K Y
Sbjct: 113 LGGLAAAGYRITTSGVPERQGIVHRLDVGTSGV-MLVAISERAYTVLKRAFKCRTVDKRY 171
Query: 127 LALTQGIIEEER-EINAPILTFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKT 185
AL QG + I+API + ++K G+ ++T L+ +LL V ++T
Sbjct: 172 HALVQGHPDPSSGTIDAPIGRHRGHTWKFAVTKDGRHSITHYDTLEAFVAASLLDVHLET 231
Query: 186 GRTHQIRVHLKHINHPIIGDTLYNNEPSLAKRL-----MLHAHKIA 226
GRTHQIR H ++ P GD +Y +P LAKRL LHA ++
Sbjct: 232 GRTHQIRAHFAELHRPCCGDLVYGADPKLAKRLGLERQWLHARSLS 277
>ref|NP_438344.1| (NC_000907) sfhB protein (sfhB) [Haemophilus influenzae Rd]
sp|P44445|RLUD_HAEIN Ribosomal large subunit pseudouridine synthase D (Pseudouridylate
synthase) (Uracil hydrolyase)
pir||F64144 hypothetical protein HI0176 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC21845.1| (U32702) sfhB protein (sfhB) [Haemophilus influenzae Rd]
Length = 324
Score = 89.7 bits (221), Expect = 2e-17
Identities = 54/201 (26%), Positives = 101/201 (49%), Gaps = 21/201 (10%)
Query: 30 IGGKKLMVARKELPKNTHFSVQKVEKPSVIFEDENILALFKPPFIESYDLASFFKGWAL- 88
+GG+++ + E+ T F + + ++++ED++I+ + KP + + A G L
Sbjct: 59 LGGERIEII-VEVEDETRFEAENIPL-NIVYEDDDIIVINKPKDLVVHPGAGNPNGTVLN 116
Query: 89 -----------------LHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQ 131
+HRLDK+T+G++++ K K + + R + +EY A+
Sbjct: 117 ALLYHYPPIVEVPRAGIVHRLDKDTTGLMVVAK-TIPAQTKLVRDLQKRKITREYEAVAS 175
Query: 132 GIIEEEREINAPILTFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQI 191
GI+ + ++ P+ T + + G+ AVT ++ T L++ ++TGRTHQI
Sbjct: 176 GIMTKGGTVDQPMARHATKRTLMAVHPMGKPAVTHYRIMENYRNYTRLRLRLETGRTHQI 235
Query: 192 RVHLKHINHPIIGDTLYNNEP 212
RVH+ HI HP++GD Y P
Sbjct: 236 RVHMAHIAHPLLGDQTYGGRP 256
>ref|NP_212152.1| (NC_001318) conserved hypothetical protein [Borrelia burgdorferi]
pir||B70102 conserved hypothetical protein BB0018 - Lyme disease spirochete
gb|AAC66413.1| (AE001116) conserved hypothetical protein [Borrelia burgdorferi]
Length = 336
Score = 89.7 bits (221), Expect = 2e-17
Identities = 64/198 (32%), Positives = 101/198 (50%), Gaps = 28/198 (14%)
Query: 57 SVIFEDENILALFKPPFIESYDLASFFKGWA-----------------------LLHRLD 93
++I+ED N++ L KP I S+ S + ++HRLD
Sbjct: 95 AIIYEDSNVIVLNKPQGILSHPGISHWDDTVVNFLLYHIKSLKINFNEEKIRPGIVHRLD 154
Query: 94 KETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEE-REINAPILTFK-TTK 151
K+TSGV++ K S A++ FKD+ K Y+A+ +G I + I K K
Sbjct: 155 KDTSGVLICAKNISTLRFLAQQ-FKDKRTNKVYIAIVKGNFNSFFGSIESFIDRDKHNRK 213
Query: 152 AFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNE 211
FS +G++A+T L + +LL + KTGRTHQ+RVH+K++N PI+GD +Y
Sbjct: 214 KFSVSKDRGKKALTEYRLLLNFGEYSLLALKPKTGRTHQLRVHMKYLNFPILGDEVYGRV 273
Query: 212 PSLAKR--LMLHAHKIAL 227
K+ LMLH++K+ +
Sbjct: 274 DGSLKKITLMLHSYKLEI 291
>ref|NP_471677.1| (NC_003212) similar to putative ribosomal large subunit
pseudouridine synthase [Listeria innocua]
emb|CAC97573.1| (AL596172) similar to putative ribosomal large subunit
pseudouridine synthase [Listeria innocua]
Length = 289
Score = 89.7 bits (221), Expect = 2e-17
Identities = 63/144 (43%), Positives = 85/144 (58%), Gaps = 9/144 (6%)
Query: 89 LHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLAL---TQGIIEEEREINAPIL 145
+HRLD+ TSG+VL K N ++RA+ + YLA T G++ + IN PI
Sbjct: 129 VHRLDQTTSGLVLFAK-NKLAIAGLSWQMENRAIHRTYLAAVDGTWGLVMQT--INKPIG 185
Query: 146 TFKTTKAFSKISKKGQEAVTIITPLKIINKK--TLLKVGIKTGRTHQIRVHLKHINHPII 203
+ + +IS GQ AVT + L+ N+ +L++ I+TGRTHQIRVHL I HPII
Sbjct: 186 EDRHHGSRRQISPYGQPAVTHVKVLENDNENNTSLVECQIETGRTHQIRVHLSGIGHPII 245
Query: 204 GDTLYNNEPSLAKRLMLHAHKIAL 227
GDTLY S A R+MLHA K+ L
Sbjct: 246 GDTLYGGS-SRANRIMLHAEKLHL 268
>sp|P70870|RLUD_BORBU Ribosomal large subunit pseudouridine synthase D (Pseudouridylate
synthase) (Uracil hydrolyase)
Length = 326
Score = 89.7 bits (221), Expect = 2e-17
Identities = 64/198 (32%), Positives = 101/198 (50%), Gaps = 28/198 (14%)
Query: 57 SVIFEDENILALFKPPFIESYDLASFFKGWA-----------------------LLHRLD 93
++I+ED N++ L KP I S+ S + ++HRLD
Sbjct: 85 AIIYEDSNVIVLNKPQGILSHPGISHWDDTVVNFLLYHIKSLKINFNEEKIRPGIVHRLD 144
Query: 94 KETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEE-REINAPILTFK-TTK 151
K+TSGV++ K S A++ FKD+ K Y+A+ +G I + I K K
Sbjct: 145 KDTSGVLICAKNISTLRFLAQQ-FKDKRTNKVYIAIVKGNFNSFFGSIESFIDRDKHNRK 203
Query: 152 AFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNE 211
FS +G++A+T L + +LL + KTGRTHQ+RVH+K++N PI+GD +Y
Sbjct: 204 KFSVSKDRGKKALTEYRLLLNFGEYSLLALKPKTGRTHQLRVHMKYLNFPILGDEVYGRV 263
Query: 212 PSLAKR--LMLHAHKIAL 227
K+ LMLH++K+ +
Sbjct: 264 DGSLKKITLMLHSYKLEI 281
>ref|NP_358424.1| (NC_003098) 23S rRNA pseudouridine synthase (supresses ftsH(ts)
mutants) [Streptococcus pneumoniae R6]
gb|AAK99634.1| (AE008458) 23S rRNA pseudouridine synthase (supresses ftsH(ts)
mutants) [Streptococcus pneumoniae R6]
Length = 295
Score = 89.7 bits (221), Expect = 2e-17
Identities = 74/275 (26%), Positives = 126/275 (44%), Gaps = 40/275 (14%)
Query: 6 KILSVQENISHKKAKALIDSGLVSIGG--KKLMVARKE-------LPKNTHFSVQKVEKP 56
K LS +S A I SG V + G KK +E +P+ + P
Sbjct: 14 KALSDLSELSRSLANEQIKSGQVLVNGQVKKAKYTVQEGDVVTYHVPEPEVLEYVAEDLP 73
Query: 57 -SVIFEDENILALFKPPFIESYDLASFFKGW---------------------ALLHRLDK 94
++++DE++ + KP + + A G ++HR+DK
Sbjct: 74 LEIVYQDEDVAVVNKPQGMVVHPSAGHTSGTLVNALMYHIKDLSGINGVLRPGIVHRIDK 133
Query: 95 ETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEERE-INAPILTFKTTKAF 153
+TSG++++ K N + HL + KD+ ++Y A+ G + +R I API + +
Sbjct: 134 DTSGLLMIAK-NDDAHLVLAQELKDKKSLRKYWAIVHGNLPNDRGVIEAPIGRSEKDRKK 192
Query: 154 SKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPS 213
++ KG+ AVT L+ +L+++ ++TGRTHQIRVH+ +I HP+ GD +Y +
Sbjct: 193 QAVTAKGKPAVTRFHVLERFGDYSLVELQLETGRTHQIRVHMAYIGHPVAGDEVYGPRKT 252
Query: 214 L-AKRLMLHAHKIALL------GYEFEAIAPKEFE 241
L LHA + EF+A P+ F+
Sbjct: 253 LKGHGQFLHAKTLGFTHPRTGKTLEFKADIPEIFK 287
>ref|NP_207538.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
sp|O25441|Y745_HELPY Hypothetical protein HP0745
pir||A64613 conserved hypothetical protein HP0745 - Helicobacter pylori
(strain 26695)
gb|AAD07795.1| (AE000587) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 327
Score = 89.7 bits (221), Expect = 2e-17
Identities = 78/266 (29%), Positives = 127/266 (47%), Gaps = 50/266 (18%)
Query: 6 KILSVQENISHKKAKALIDSGLVSIGGKKLM---VARKELPKNTHFSVQKVEKP------ 56
+ L+ + IS + LI GLV K++ +A KE + T + + KP
Sbjct: 16 EFLAKELQISKNQVLNLIKEGLVFCQKKEVKKGGLALKEGDEITLLTPKITPKPLKKELD 75
Query: 57 ---SVIFEDENILALFKPPFI-------------------ESYDLASFF--KGWALLHRL 92
VIFEDE++L L KPP + ++Y+L++ + + ++HRL
Sbjct: 76 LEIEVIFEDEDLLVLNKPPNLVVHKALSVKEPTLVDWLEFKNYELSNLGLKERYGIVHRL 135
Query: 93 DKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKA 152
DK+TSG +++ K N H+ + K + + + Y+AL ++EE+ LT
Sbjct: 136 DKDTSGGIVIAKNNFT-HVHLSEQLKTKMMGRYYIALLSTPLKEEKMSVECYLTRNPNNR 194
Query: 153 FSKISKKG----------QEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPI 202
I+ K E ++++T +N L+ + TGRTHQIR HL+++N I
Sbjct: 195 LKMIALKAVKKEKSRYSKSEFISLLTSQNNLN---LIGAKLFTGRTHQIRAHLEYLNRHI 251
Query: 203 IGDTLYNNEPSLAK---RLMLHAHKI 225
IGD LY +L K R+MLHA+ I
Sbjct: 252 IGDNLYGLNGALPKEEIRIMLHAYLI 277
>ref|NP_345571.1| (NC_003028) ribosomal large subunit pseudouridine synthase, RluD
subfamily [Streptococcus pneumoniae TIGR4]
ref|NP_358600.1| (NC_003098) 23S rRNA pseudouridine synthase [Streptococcus
pneumoniae R6]
gb|AAK75211.1| (AE007411) ribosomal large subunit pseudouridine synthase, RluD
subfamily [Streptococcus pneumoniae TIGR4]
gb|AAK99810.1| (AE008473) 23S rRNA pseudouridine synthase [Streptococcus
pneumoniae R6]
Length = 298
Score = 89.4 bits (220), Expect = 3e-17
Identities = 63/209 (30%), Positives = 107/209 (51%), Gaps = 24/209 (11%)
Query: 41 ELPKNTHF-SVQKVEKP-SVIFEDENILALFKPPFIESYD-------LASFFKGWA---- 87
++P F +++ +E P +++ED++ L L KP + S +A+F KG+
Sbjct: 59 DIPAEKGFETLEAIELPLDILYEDDHFLVLNKPYGVASIPSVNHSNTIANFIKGYYVKQN 118
Query: 88 -------LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGI--IEEER 138
++ RLD++TSG++L K H + K + ++++K Y AL +G +E E
Sbjct: 119 YENQQVHIVTRLDRDTSGLMLFAKHGYA-HARLDKQLQKKSIEKRYFALVKGDGHLEPEG 177
Query: 139 EINAPILTFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHI 198
EI API + + +++K G+ A T + L+ + + TGRTHQIRVH HI
Sbjct: 178 EIIAPIARDEDSIITRRVAKGGKYAHTSYKIVASYGNIHLVYIHLHTGRTHQIRVHFSHI 237
Query: 199 NHPIIGDTLYNNE-PSLAKRLMLHAHKIA 226
P++GD LY +R LH H ++
Sbjct: 238 GFPLLGDDLYGGSLEDGIQRQALHCHYLS 266
>ref|NP_267154.1| (NC_002662) pseudouridine synthase [Lactococcus lactis subsp.
lactis]
gb|AAK05096.1|AE006334_2 (AE006334) pseudouridine synthase [Lactococcus lactis subsp.
lactis]
Length = 301
Score = 89.0 bits (219), Expect = 4e-17
Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 32/231 (13%)
Query: 41 ELPKNTHFSVQKVEKP-SVIFEDENILALFKPPFIESYDLASFFKGW------------- 86
E+P+ + + P +I+ED ++ + KP + + A G
Sbjct: 61 EVPEAEVLDIVAEDLPLEIIYEDSDVAVVNKPQGMVVHPAAGHASGTLVNAIMYHIKDLS 120
Query: 87 --------ALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER 138
++HR+DK+TSG++++ K N + H KD+ K+ YLA+ G I ++
Sbjct: 121 SINGVIRPGIVHRIDKDTSGLLMIAK-NDKAHESLAAQLKDKTSKRRYLAIVHGEIANDK 179
Query: 139 -EINAPILTFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKH 197
I API + + G+ AVT L+ TL+ + ++TGRTHQIRVH+ +
Sbjct: 180 GTIEAPIGRNLKDRKKQAVVSGGKPAVTHFEVLERFYGYTLIALRLETGRTHQIRVHMNY 239
Query: 198 INHPIIGDTLYNNEPSLA--KRLMLHA------HKIALLGYEFEAIAPKEF 240
I HP+ GD LY +L K LHA H EF+ AP+ F
Sbjct: 240 IGHPVAGDPLYGPNKTLTPNKGQFLHAETLGFDHPTTGEFMEFQVDAPEIF 290
>ref|NP_223040.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZMA1|Y347_HELPJ Hypothetical protein JHP0321
pir||A71946 hypothetical protein jhp0321 - Helicobacter pylori (strain J99)
gb|AAD05911.1| (AE001468) putative [Helicobacter pylori J99]
Length = 293
Score = 89.0 bits (219), Expect = 4e-17
Identities = 68/167 (40%), Positives = 91/167 (53%), Gaps = 32/167 (19%)
Query: 90 HRLDKETSGVVLLVKE-NSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILT-- 146
HRLD ETSG+VL K S LKA F + VKK YLAL G++++ IN PILT
Sbjct: 116 HRLDYETSGLVLAGKTLQSTKDLKA--LFMQKKVKKTYLALAHGLVDKSIIINKPILTPQ 173
Query: 147 --FKTTKAFSKISKKGQEAVTIITPLKI--INKKTLLKVGIKTGRTHQIRVHLKHINHPI 202
K + S+IS G+ ++T++ PL +LLK+ TGRTHQIR+HL ++H I
Sbjct: 174 NIQKDLRIRSQISPLGKPSITLVEPLSYNPFLDISLLKITPLTGRTHQIRLHLSSVDHRI 233
Query: 203 IGDTLY----------------NNEPSLAKRLMLHAHKIALLGYEFE 233
+G+ LY NN P+ LMLHA A L +EF+
Sbjct: 234 VGEGLYGVADENAREYLQLKRENNAPT----LMLHA---ASLEFEFK 273
>sp|O66114|YLP4_ZYMMO Hypothetical 24.4 kDa protein in LPD 3'region (ORF4)
emb|CAA63803.1| (X93605) hypothetical protein [Zymomonas mobilis]
Length = 219
Score = 88.6 bits (218), Expect = 5e-17
Identities = 67/181 (37%), Positives = 103/181 (56%), Gaps = 16/181 (8%)
Query: 74 IESYDLASF---FKGW-ALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLAL 129
+E+Y LAS FK W +++HRLD++TSG +LL + N + H + +AF VKK Y A+
Sbjct: 36 LENY-LASLCFGFKRWPSIVHRLDRDTSGCLLLAR-NPKMHRRLSEAFSQGQVKKCYWAI 93
Query: 130 TQGIIEE-EREINAPILTFKTTKAFSKI--SKKGQEAVTIITPLKIINKKTLLKVGIKTG 186
+G+ E+ E I+ P+L + K+ +I KG+ AVT L ++L+ +TG
Sbjct: 94 LEGVPEKNEGTIDLPLLKISSPKSGWRIVADDKGKRAVTHWEILAKNKGRSLVAFRPETG 153
Query: 187 RTHQIRVH-LKHINHPIIGDTLY-NNEPSLAKRLMLHAHKIALLGYEFEAIA-----PKE 239
RTHQ+RVH + PI+GD Y +++ R+MLHAH + + E + IA PK
Sbjct: 154 RTHQLRVHAATGLGLPIVGDPFYSSHKDENISRMMLHAHSLEIARLEKKPIAAEAPLPKA 213
Query: 240 F 240
F
Sbjct: 214 F 214
>ref|NP_406747.1| (NC_003143) ribosomal large subunit pseudouridine synthase D
[Yersinia pestis]
emb|CAC92511.1| (AJ414156) ribosomal large subunit pseudouridine synthase D
[Yersinia pestis]
Length = 325
Score = 88.6 bits (218), Expect = 5e-17
Identities = 60/228 (26%), Positives = 107/228 (46%), Gaps = 32/228 (14%)
Query: 15 SHKKAKALIDSGLVSIGGKK------------LMVARKELPKNTHFSVQKVEKPSVIFED 62
S + K I V++ GKK L+ ++ ++ ++ Q++ +++ED
Sbjct: 32 SRSRIKEWILDSRVTVNGKKINKPKEKVLGGELVAIDAQIEEDARWAPQEIPL-DIVYED 90
Query: 63 ENILALFKPPFIESYDLASFFKGWAL------------------LHRLDKETSGVVLLVK 104
+IL + KP + + A G L +HRLDK+T+G++++ K
Sbjct: 91 NDILVINKPRGLVVHPGAGNPDGTVLNALLHYYPEIMDVPRAGIVHRLDKDTTGLMVVAK 150
Query: 105 ENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKISKKGQEAV 164
+ +A + R + +EY A+ G + ++ PI T + + G+ A
Sbjct: 151 -TVPAQTRLVEALQAREITREYEAVAIGNMTAGGRVDEPISRHSTKRTHMAVHPMGKPAT 209
Query: 165 TIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEP 212
T ++ T L++ ++TGRTHQIRVH+ HINHP++GD LY P
Sbjct: 210 THYRIMEHFRAHTRLRLRLETGRTHQIRVHMSHINHPLVGDQLYGGRP 257
>ref|NP_326129.1| (NC_002771) RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D
(PSEUDOURIDYLATE SYNTHASE) (URACIL HYDROLYASE)
[Mycoplasma pulmonis]
emb|CAC13471.1| (AL445564) RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D
(PSEUDOURIDYLATE SYNTHASE) (URACIL HYDROLYASE)
[Mycoplasma pulmonis]
Length = 296
Score = 87.8 bits (216), Expect = 9e-17
Identities = 77/283 (27%), Positives = 126/283 (44%), Gaps = 44/283 (15%)
Query: 2 EKAYKILSVQENISHKKAKALIDSGLVSIGGKKLMVARKELPKNTHFSVQKVE------K 55
E+ K +S IS K+LI V + GK + L + V KV K
Sbjct: 10 ERIDKYISDNSAISRNDIKSLILEKAVFVNGKVIQKPNFILKPDAEIEVIKVIDKTIDLK 69
Query: 56 PS-----VIFEDENILALFKPPFIESYD------------LASFFKGWA---------LL 89
P +++EDE+++ + KP + + L FK + ++
Sbjct: 70 PEKMDLDIVYEDEHLIVINKPSGLVVHPAPGHYSQTLVNGLIYHFKNLSNENGLLRPGIV 129
Query: 90 HRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER-EINAPI-LTF 147
HR+DK+TSG++++ K N L AK K+ +K+ Y+A+ +G E + +N PI +
Sbjct: 130 HRIDKDTSGLLIIAKTNQVHQLLAKM-LKNHEIKRSYIAIVEGFFENKIVHLNLPIGRSQ 188
Query: 148 KTTKAFSKISKKGQEAVTIITPLKIINKK----TLLKVGIKTGRTHQIRVHLKHINHPII 203
K K + + A+T + +K + +L++ ++TGRTHQIRVHL + HP+
Sbjct: 189 KDRKKMEITNNNSKNAITHVYLIKQFYYEKQPLSLVECQLETGRTHQIRVHLNYFKHPVW 248
Query: 204 GDTLYNNEPS-----LAKRLMLHAHKIALLGYEFEAIAPKEFE 241
D LY S L + H I FE P+EF+
Sbjct: 249 NDPLYGKSFSDYGQYLHAYKLFFVHPITNQELTFEIPMPEEFQ 291
>ref|NP_223400.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZL98|Y745_HELPJ Hypothetical protein JHP0682
pir||B71900 hypothetical protein jhp0682 - Helicobacter pylori (strain J99)
gb|AAD06270.1| (AE001500) putative [Helicobacter pylori J99]
Length = 327
Score = 87.4 bits (215), Expect = 1e-16
Identities = 79/266 (29%), Positives = 125/266 (46%), Gaps = 50/266 (18%)
Query: 6 KILSVQENISHKKAKALIDSGLVSIGGKKLM---VARKELPKNTHFSVQKVEKP------ 56
+ L+ + IS + LI GLV K++ +A KE T + + V KP
Sbjct: 16 EFLAKELQISKNQVLNLIKEGLVFCQKKEVKKGGLALKEGDAITLLTPKIVPKPLKKELD 75
Query: 57 ---SVIFEDENILALFKPPFI-------------------ESYDLASFF--KGWALLHRL 92
VIFEDE++L L KPP + ++Y+L++ + + ++HRL
Sbjct: 76 LEIEVIFEDEDLLVLNKPPNLVVHKAPSVKEPTLVDWLKSQNYELSNLGLKERYGIVHRL 135
Query: 93 DKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKA 152
DK+TSG +++ K N H+ + K + + + Y+AL ++EE+ LT
Sbjct: 136 DKDTSGGIVIAKNNFT-HVCLSEQLKTKMMGRYYIALLSTPLKEEKMSVECYLTRNPNNR 194
Query: 153 FSKISKKG----------QEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPI 202
I+ K E +++T N L+ + TGRTHQIR HL+++N I
Sbjct: 195 LKMIALKAAKKEKSRYSKSEFTSLLTSQ---NGMDLIGAKLFTGRTHQIRAHLEYLNRHI 251
Query: 203 IGDTLYNNEPSLAK---RLMLHAHKI 225
IGD LY L+K R+MLHA+ I
Sbjct: 252 IGDNLYGLNGVLSKEEIRIMLHAYLI 277
>ref|NP_457133.1| (NC_003198) ftsH suppressor protein SfhB [Salmonella enterica
subsp. enterica serovar Typhi]
ref|NP_461593.1| (NC_003197) pseudouridine synthase (pseudouridines 1911, 1915, 1917
in 23S RNA) [Salmonella typhimurium LT2]
gb|AAL21552.1| (AE008821) pseudouridine synthase (pseudouridines 1911, 1915, 1917
in 23S RNA) [Salmonella typhimurium LT2]
emb|CAD05842.1| (AL627276) ftsH suppressor protein SfhB [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 326
Score = 87.4 bits (215), Expect = 1e-16
Identities = 55/201 (27%), Positives = 100/201 (49%), Gaps = 21/201 (10%)
Query: 30 IGGKKLMVARKELPKNTHFSVQKVEKPSVIFEDENILALFKPPFIESYDLASFFKGWAL- 88
+GG+++ + E+ + F Q + +++ED++IL + KP + + A G L
Sbjct: 60 LGGERVAIDA-EIDEEIRFEAQDIPL-DIVYEDDDILVINKPRDLVVHPGAGNPDGTVLN 117
Query: 89 -----------------LHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQ 131
+HRLDK+T+G++++ K + ++ + R + +EY A+
Sbjct: 118 ALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAK-TVPAQTRLVESLQLREITREYEAVAI 176
Query: 132 GIIEEEREINAPILTFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQI 191
G + +N PI T + + G+ AVT ++ T L++ ++TGRTHQI
Sbjct: 177 GHMTAGGTVNEPISRHPTKRTHMSVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236
Query: 192 RVHLKHINHPIIGDTLYNNEP 212
RVH+ HI HP++GD +Y P
Sbjct: 237 RVHMAHITHPLVGDQVYGGRP 257
>ref|NP_388802.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
sp|P54604|YHCT_BACSU Hypothetical protein yhcT
pir||H69823 conserved hypothetical protein yhcT - Bacillus subtilis
emb|CAA65704.1| (X96983) hypothetical protein [Bacillus subtilis]
emb|CAB12749.1| (Z99108) similar to hypothetical proteins [Bacillus subtilis]
Length = 302
Score = 87.0 bits (214), Expect = 2e-16
Identities = 67/238 (28%), Positives = 119/238 (49%), Gaps = 23/238 (9%)
Query: 10 VQENISHKKAKALIDSGLVSIGGKKLMVARKELPKNTHFSV-QKVEKPSVIFEDENILAL 68
+Q+ +SH++ K +S L ++ KK +L ++ SV + + ++FED ++L +
Sbjct: 36 IQDWMSHQQIKVNHESVLNNMIVKKGDRVFIDLQESEASSVIPEYGELDILFEDNHMLII 95
Query: 69 FKPPFIESYDLASFFKGWAL------------------LHRLDKETSGVVLLVKENSEFH 110
KP I ++ G +HRLD++TSG ++ K H
Sbjct: 96 NKPAGIATHPNEDGQTGTLANLIAYHYQINGETCKVRHVHRLDQDTSGAIVFAKHRLA-H 154
Query: 111 LKAKKAFKDRAVKKEYLALTQGIIEEER-EINAPILTFKTTKAFSKISKKGQEAVTIITP 169
+ + + +K+ Y A+ +G + ++ IN PI ++ ++S GQ AVT
Sbjct: 155 AILDQQLEKKTLKRTYTAIAEGKLRTKKGTINPPIGRDRSHPTRRRVSPGGQTAVTHFKV 214
Query: 170 LKIINKK--TLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKRLMLHAHKI 225
+ K+ +L+++ ++TGRTHQIRVHL + HP+ GD+LY L R LHA+K+
Sbjct: 215 MASNAKERLSLVELELETGRTHQIRVHLASLGHPLTGDSLYGGGSKLLNRQALHANKV 272
>ref|NP_231662.1| (NC_002505) ribosomal large subunit pseudouridine synthase C
[Vibrio cholerae]
sp|Q9KQH0|RLUC_VIBCH Ribosomal large subunit pseudouridine synthase C (Pseudouridylate
synthase) (Uracil hydrolyase)
pir||G82126 ribosomal large chain pseudouridine synthase C VC2028 [imported] -
Vibrio cholerae (group O1 strain N16961)
gb|AAF95176.1| (AE004277) ribosomal large subunit pseudouridine synthase C [Vibrio
cholerae]
Length = 315
Score = 87.0 bits (214), Expect = 2e-16
Identities = 73/249 (29%), Positives = 125/249 (49%), Gaps = 31/249 (12%)
Query: 5 YKIL---SVQENISHKKAKALIDSG-LVSIGGKKLMVARKE-LPKNTHFSVQKVEKPSVI 59
Y+IL V+ N KA+ +++G +V + + V E P +T S + ++
Sbjct: 39 YRILRKGEVRVNKKRVKAEYKLEAGDVVRVPPVTVEVKENEPAPPSTKLSKVAELEHCIV 98
Query: 60 FEDENILALFKPPFIESYDLASFFKG--------------WALLHRLDKETSGVVLLVKE 105
+ED+++L L KP + + G L+HR+D++TSG++L+ K+
Sbjct: 99 YEDDHLLILNKPSGTAVHGGSGLHFGAIEALRALRPQARFLELVHRIDRDTSGILLVAKK 158
Query: 106 NSEF-HLKAKKAFKDRAVKKEYLALTQGIIEEE-REINAPILTFKTTKAFSKISKKGQEA 163
S HL+A+ F+++ V+K Y AL G + E + +NAP+L + +++ G+ +
Sbjct: 159 RSALRHLQAQ--FREKTVQKYYYALVMGHWDAECKVVNAPLLK-NEVNSIVRVNPNGKPS 215
Query: 164 VTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLA-------K 216
T L+ + TL++ TGRTHQIRVH +++ HPI D Y + A +
Sbjct: 216 ETRFRILEKFAEATLVQASPVTGRTHQIRVHTQYMGHPIAWDDRYGDRRFDAYTAQFGIE 275
Query: 217 RLMLHAHKI 225
RL LHA I
Sbjct: 276 RLFLHAANI 284
>ref|NP_645897.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB94945.1| (AP004825) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 305
Score = 86.7 bits (213), Expect = 2e-16
Identities = 54/146 (36%), Positives = 85/146 (57%), Gaps = 6/146 (4%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER-EINAPILT 146
++HR+D +TSG+ L+V +N H + D++VK++Y+AL G I + I+API
Sbjct: 134 IVHRIDMDTSGL-LMVAKNDIAHRGLVEQLMDKSVKRKYIALVHGNIPHDYGTIDAPIGR 192
Query: 147 FKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDT 206
K + + G+EAVT L+ TL++ ++TGRTHQIRVH+K+I P++GD
Sbjct: 193 NKNDRQSMAVVDDGKEAVTHFNVLEHFKDYTLVECQLETGRTHQIRVHMKYIGFPLVGDP 252
Query: 207 LYNNEPSL-AKRLMLHAHKIALLGYE 231
Y + +L LHA L+G+E
Sbjct: 253 KYGPKKTLDIGGQALHA---GLIGFE 275
>ref|NP_346438.1| (NC_003028) ribosomal large subunit pseudouridine synthase, RluD
subfamily [Streptococcus pneumoniae TIGR4]
gb|AAK76078.1| (AE007490) ribosomal large subunit pseudouridine synthase, RluD
subfamily [Streptococcus pneumoniae TIGR4]
Length = 291
Score = 86.7 bits (213), Expect = 2e-16
Identities = 61/183 (33%), Positives = 99/183 (53%), Gaps = 17/183 (9%)
Query: 59 IFEDENILALFKPPFIESY----------DLASFFKGWA--LLHRLDKETSGVVLLVKEN 106
+++D++++ + KP ++++ + S + G ++HRLD ETSG+VL K
Sbjct: 84 VYQDQHLIIVNKPEGMKTHGNQPNEIALLNHVSTYVGQTCYVVHRLDMETSGLVLFAKNP 143
Query: 107 SEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKI--SKKGQEAV 164
+ + + + + +EY AL G I + + + +I +K GQ A
Sbjct: 144 FILPI-LNRLLEKKEISREYWALVDGNINRKELVFRDKIGRDRHDRRKRIVDAKNGQYAE 202
Query: 165 TIITPLK-IINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKRLMLHAH 223
T ++ LK NK +L +KTGRTHQIRVHL H N PI+GD LYN++ S RLMLHA
Sbjct: 203 THVSRLKQFSNKTSLAHCKLKTGRTHQIRVHLSHHNLPILGDPLYNSK-SKTSRLMLHAF 261
Query: 224 KIA 226
+++
Sbjct: 262 RLS 264
>ref|NP_657862.1| (NC_003995) PseudoU_synth_2, RNA pseudouridylate synthase [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 302
Score = 86.7 bits (213), Expect = 2e-16
Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 15/165 (9%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER-EINAPILT 146
++HR+DK+TSG+ L+V +N H + V + Y A+ G+I ++ I+API
Sbjct: 134 IVHRIDKDTSGL-LMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIAR 192
Query: 147 FKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDT 206
K + + + G+ AVT L+ TL++ ++TGRTHQIRVH+K+I +P+ GD
Sbjct: 193 DKKERQSMTVDENGKHAVTHFQVLERFKDFTLVECRLETGRTHQIRVHMKYIGYPLAGDP 252
Query: 207 LYNNEPSL-AKRLMLHAHKIALLGY---------EFEAIAPKEFE 241
Y + +L LHA +LG+ +FEA P+ FE
Sbjct: 253 KYGPKKTLDMNGQALHA---GILGFDHPRTGEYIQFEAPIPEVFE 294
>ref|NP_371721.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_374313.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB42292.1| (AP003132) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB57359.1| (AP003361) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 305
Score = 86.7 bits (213), Expect = 2e-16
Identities = 54/146 (36%), Positives = 85/146 (57%), Gaps = 6/146 (4%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER-EINAPILT 146
++HR+D +TSG+ L+V +N H + D++VK++Y+AL G I + I+API
Sbjct: 134 IVHRIDMDTSGL-LMVAKNDIAHRGLVEQLMDKSVKRKYIALVHGNIPHDYGTIDAPIGR 192
Query: 147 FKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDT 206
K + + G+EAVT L+ TL++ ++TGRTHQIRVH+K+I P++GD
Sbjct: 193 NKNDRQSMAVVDDGKEAVTHFNVLEHFKDYTLVECQLETGRTHQIRVHMKYIGFPLVGDP 252
Query: 207 LYNNEPSL-AKRLMLHAHKIALLGYE 231
Y + +L LHA L+G+E
Sbjct: 253 KYGPKKTLDIGGQALHA---GLIGFE 275
>ref|NP_230358.1| (NC_002505) ribosomal large subunit pseudouridine synthase D
[Vibrio cholerae]
pir||G82289 ribosomal large chain pseudouridine synthase D VC0709 [imported] -
Vibrio cholerae (group O1 strain N16961)
gb|AAF93874.1| (AE004157) ribosomal large subunit pseudouridine synthase D [Vibrio
cholerae]
Length = 324
Score = 86.3 bits (212), Expect = 3e-16
Identities = 53/203 (26%), Positives = 99/203 (48%), Gaps = 20/203 (9%)
Query: 32 GKKLMVARKELPKNTHFSVQKVEKPSVIFEDENILALFKP------------------PF 73
G +++ + EL + Q + ++++ED++I+ + KP
Sbjct: 61 GGEVITVQAELEDEQRWEAQDLPL-NIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNAL 119
Query: 74 IESYDLASFFKGWALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGI 133
+ Y + ++HRLDK+T+G++++ K + +A + R V +EY A+ G
Sbjct: 120 LFHYSPIAEVPRAGIVHRLDKDTTGLMVVAK-TVPAQTRLVRALQKRDVTREYEAIVIGT 178
Query: 134 IEEEREINAPILTFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRV 193
+ I+ PI T + +S G+ AVT + + T L++ ++TGRTHQIRV
Sbjct: 179 MTAGGMIDKPIGRHSTKRTLMSVSPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRV 238
Query: 194 HLKHINHPIIGDTLYNNEPSLAK 216
H+ ++ HP++GDT Y + K
Sbjct: 239 HMAYLQHPLLGDTAYGGRARIPK 261
>ref|NP_289149.1| (NC_002655) suppressor of ftsH mutation [Escherichia coli O157:H7
EDL933]
gb|AAG57707.1|AE005490_2 (AE005490) suppressor of ftsH mutation [Escherichia coli O157:H7
EDL933]
Length = 326
Score = 86.3 bits (212), Expect = 3e-16
Identities = 54/201 (26%), Positives = 100/201 (48%), Gaps = 21/201 (10%)
Query: 30 IGGKKLMVARKELPKNTHFSVQKVEKPSVIFEDENILALFKPPFIESYDLASFFKGWAL- 88
+GG+++ + E+ + F Q + +++EDE+I+ + KP + + A G L
Sbjct: 60 LGGEQVAI-NAEIEEEARFEPQDIPL-DIVYEDEDIIVINKPRDLVVHPGAGNPDGTXLN 117
Query: 89 -----------------LHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQ 131
+HRLDK+T+G++++ K + ++ + R + +EY A+
Sbjct: 118 ALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAK-TVPAQTRLVESLQRREITREYEAVAI 176
Query: 132 GIIEEEREINAPILTFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQI 191
G + ++ PI T + + G+ AVT ++ T L++ ++TGRTHQI
Sbjct: 177 GHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236
Query: 192 RVHLKHINHPIIGDTLYNNEP 212
RVH+ HI HP++GD +Y P
Sbjct: 237 RVHMAHITHPLVGDPVYGGRP 257
>ref|NP_464494.1| (NC_003210) similar to ribosomal large subunit pseudouridine
synthetase [Listeria monocytogenes EGD-e]
emb|CAC99047.1| (AL591977) similar to ribosomal large subunit pseudouridine
synthetase [Listeria monocytogenes]
Length = 296
Score = 86.3 bits (212), Expect = 3e-16
Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 20/190 (10%)
Query: 58 VIFEDENILALFKPPFIESY--------DLASFFKGWA----------LLHRLDKETSGV 99
++FED+ +L + KP + S +A+F KG ++ RLD+ETSG+
Sbjct: 82 IVFEDDFLLIINKPAGMASIPSQYHPNGSVANFVKGHYEAQGLTNAIHIVTRLDRETSGL 141
Query: 100 VLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER-EINAPILTFKTTKAFSKISK 158
+L+ K N H + + +K+ Y A G++ E++ I API + + ++
Sbjct: 142 MLIAK-NRFAHARLSTFLQKGLLKRRYQAFISGVLVEQKGSIEAPIGRKEVSIMERFVTP 200
Query: 159 KGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKRL 218
+G+ A T L + + ++TGRTHQIRVH +I HP+IGD +Y + +L KR
Sbjct: 201 EGKYAKTNYEVLARYRAFDHVAIQLETGRTHQIRVHFSYIGHPLIGDDMYGGDTNLLKRQ 260
Query: 219 MLHAHKIALL 228
LH+ + L+
Sbjct: 261 ALHSCHLHLV 270
>ref|NP_311484.1| (NC_002695) suppressor of ftsH mutation [Escherichia coli O157:H7]
dbj|BAB36880.1| (AP002562) suppressor of ftsH mutation [Escherichia coli O157:H7]
Length = 326
Score = 86.3 bits (212), Expect = 3e-16
Identities = 54/201 (26%), Positives = 100/201 (48%), Gaps = 21/201 (10%)
Query: 30 IGGKKLMVARKELPKNTHFSVQKVEKPSVIFEDENILALFKPPFIESYDLASFFKGWAL- 88
+GG+++ + E+ + F Q + +++EDE+I+ + KP + + A G L
Sbjct: 60 LGGEQVAI-NAEIEEEARFEPQDIPL-DIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLN 117
Query: 89 -----------------LHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQ 131
+HRLDK+T+G++++ K + ++ + R + +EY A+
Sbjct: 118 ALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAK-TVPAQTRLVESLQRREITREYEAVAI 176
Query: 132 GIIEEEREINAPILTFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQI 191
G + ++ PI T + + G+ AVT ++ T L++ ++TGRTHQI
Sbjct: 177 GHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236
Query: 192 RVHLKHINHPIIGDTLYNNEP 212
RVH+ HI HP++GD +Y P
Sbjct: 237 RVHMAHITHPLVGDPVYGGRP 257
>dbj|BAA16479.1| (D90887) similar to [SwissProt Accession Number P33643]~start codon
is not identified yet [Escherichia coli]
Length = 352
Score = 85.9 bits (211), Expect = 4e-16
Identities = 54/201 (26%), Positives = 100/201 (48%), Gaps = 21/201 (10%)
Query: 30 IGGKKLMVARKELPKNTHFSVQKVEKPSVIFEDENILALFKPPFIESYDLASFFKGWAL- 88
+GG+++ + E+ + F Q + +++EDE+I+ + KP + + A G L
Sbjct: 104 LGGEQVAI-NAEIEEEARFEPQDIPL-DIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLN 161
Query: 89 -----------------LHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQ 131
+HRLDK+T+G++++ K + ++ + R + +EY A+
Sbjct: 162 ALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAK-TVPAQTRLVESLQRREITREYEAVAI 220
Query: 132 GIIEEEREINAPILTFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQI 191
G + ++ PI T + + G+ AVT ++ T L++ ++TGRTHQI
Sbjct: 221 GHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 280
Query: 192 RVHLKHINHPIIGDTLYNNEP 212
RVH+ HI HP++GD +Y P
Sbjct: 281 RVHMAHITHPLVGDPVYGGRP 301
>ref|NP_417085.1| (NC_000913) suppressor of ftsH mutation [Escherichia coli K12]
sp|P33643|RLUD_ECOLI Ribosomal large subunit pseudouridine synthase D (Pseudouridylate
synthase) (Uracil hydrolyase)
pir||E65037 ftsH suppressor protein SfhB - Escherichia coli (strain K-12)
gb|AAA92957.1| (U50134) SfhB [Escherichia coli]
gb|AAC75643.1| (AE000346) suppressor of ftsH mutation [Escherichia coli K12]
Length = 326
Score = 85.9 bits (211), Expect = 4e-16
Identities = 54/201 (26%), Positives = 100/201 (48%), Gaps = 21/201 (10%)
Query: 30 IGGKKLMVARKELPKNTHFSVQKVEKPSVIFEDENILALFKPPFIESYDLASFFKGWAL- 88
+GG+++ + E+ + F Q + +++EDE+I+ + KP + + A G L
Sbjct: 60 LGGEQVAI-NAEIEEEARFEPQDIPL-DIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLN 117
Query: 89 -----------------LHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQ 131
+HRLDK+T+G++++ K + ++ + R + +EY A+
Sbjct: 118 ALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAK-TVPAQTRLVESLQRREITREYEAVAI 176
Query: 132 GIIEEEREINAPILTFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQI 191
G + ++ PI T + + G+ AVT ++ T L++ ++TGRTHQI
Sbjct: 177 GHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236
Query: 192 RVHLKHINHPIIGDTLYNNEP 212
RVH+ HI HP++GD +Y P
Sbjct: 237 RVHMAHITHPLVGDPVYGGRP 257
>sp|P50513|RLUD_ZYMMO RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D (PSEUDOURIDYLATE
SYNTHASE) (URACIL HYDROLYASE)
pir||S60168 hypothetical protein X - Zymomonas mobilis
dbj|BAA09443.1| (D50832) homologue of E. coli ClpB5' ORF [Zymomonas mobilis]
Length = 317
Score = 85.9 bits (211), Expect = 4e-16
Identities = 80/291 (27%), Positives = 132/291 (44%), Gaps = 60/291 (20%)
Query: 7 ILSVQENISHKKAKALIDSGLVS-------------IGGKKLMVARKELPKNTHFSVQKV 53
+ S+ +S ++ K LI SG VS I LP+ H Q +
Sbjct: 21 LASLITRLSRERLKNLISSGCVSNSQGALVRDPAFKIKSLDCFTVDIPLPRPAHNEPQDI 80
Query: 54 EKPSVIFEDENILALFKP------PFIESYDLA-------------SFFKGWA---LLHR 91
++FEDE++L + KP P +YD S G A ++HR
Sbjct: 81 PL-EIVFEDEHLLVVNKPAGMVVHPAAGNYDNTLVNALLYHCAGKLSGIGGVARPGIVHR 139
Query: 92 LDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTK 151
+DK+TSG++++ K + H F D ++ + Y A+ G + ++AP+ +
Sbjct: 140 IDKDTSGLLVVAKTDPA-HAGLAAQFADHSINRRYRAIVDGNPSLQGHVDAPLARSSVNR 198
Query: 152 AFSKISK--KGQEAVT---IITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDT 206
I +G+ AVT +ITPLK +L++ ++TGRTHQ+RVH+ I H ++GD
Sbjct: 199 QKMAIVSDGRGKRAVTHYCMITPLK---NASLIECRLETGRTHQVRVHMSSIGHSLLGDP 255
Query: 207 LYNNE--------PSLA-KRLMLHA------HKIALLGYEFEAIAPKEFEI 242
+Y SLA +R LHA H I+ +F+A P++ ++
Sbjct: 256 VYGRSKKAHHALLQSLAFQRQALHAAHLGFIHPISGKQVDFDAEMPQDMQL 306
>ref|NP_643525.1| (NC_003919) ribosomal large subunit pseudouridine synthase D
[Xanthomonas axonopodis pv. citri str. 306]
gb|AAM38061.1| (AE011967) ribosomal large subunit pseudouridine synthase D
[Xanthomonas axonopodis pv. citri str. 306]
Length = 331
Score = 85.9 bits (211), Expect = 4e-16
Identities = 66/222 (29%), Positives = 103/222 (45%), Gaps = 24/222 (10%)
Query: 17 KKAKALIDSGLV----SIGGKKLMVARKELPKNTHFSVQKVEKPSVIFEDENILALFKPP 72
K AL+D + ++ G + + + L TH + Q + SV++EDE +L + KP
Sbjct: 48 KSGDALLDGEMARPRDTLRGGESVQVQVVLETQTHAAPQDIPL-SVLYEDEQVLVIDKPA 106
Query: 73 FIESYDLAS----------FFKGWAL--------LHRLDKETSGVVLLVKENSEFHLKAK 114
+ + A F+ AL +HRLDK+TSGV ++V +
Sbjct: 107 GLVVHPGAGNPDRTLVNALLFRDPALASVPRAGVVHRLDKDTSGV-MVVARTVQAQTALV 165
Query: 115 KAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKISKKGQEAVTIITPLKIIN 174
+ R V ++YLA+ G + NAPI + + G++AVT +
Sbjct: 166 EQLSAREVHRQYLAVVVGALVSGGTANAPIDRHPRDRLKMAVRDDGRDAVTHYRLRERFR 225
Query: 175 KKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAK 216
T L+ ++TGRTHQIRVH+ H+ PI+GD LY L K
Sbjct: 226 AHTALECRLETGRTHQIRVHMAHLKSPIVGDPLYGGALKLPK 267
>ref|NP_282427.1| (NC_002163) putative ribosomal pseudouridine synthase
[Campylobacter jejuni]
pir||B81336 pseudouridylate synthase (EC 4.2.1.70) rRNA-specific Cj1280c
[imported] - Campylobacter jejuni (strain NCTC 11168)
emb|CAB73534.1| (AL139077) putative ribosomal pseudouridine synthase [Campylobacter
jejuni]
Length = 322
Score = 85.9 bits (211), Expect = 4e-16
Identities = 70/242 (28%), Positives = 110/242 (44%), Gaps = 34/242 (14%)
Query: 8 LSVQENISHKKAKALIDSGLVSIGGKKLMVARKELPKNTHFSVQKVEKPSVIFEDENILA 67
+ V + I K + L + ++SI KL K F + V++EDE++L
Sbjct: 36 VQVNDKIQDKNSFKLKNGDIISIASLKLCNEIKP-QFEVDFDID------VLYEDEDLLV 88
Query: 68 LFKPPFIESYDLASFFKG----W-----------------ALLHRLDKETSGVVLLVKEN 106
L KP + + +S W L+HRLDK+TSG +L+ K N
Sbjct: 89 LNKPSNLVVHGASSVKNATLVDWLIEKKYTLSNLGGEIRAGLVHRLDKDTSGAILIAKNN 148
Query: 107 SEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKIS-----KKGQ 161
H K + D+++ + YLAL ++E++ I L + A KI+ K +
Sbjct: 149 FT-HQKLSEQLADKSMGRIYLALIDLPLKEDKIIVEKFLMRSPSNAIKKIAIDKENKFSK 207
Query: 162 EAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKRLMLH 221
A + + TL+ + TGRTHQIR HL +N I+GD+LY + R+MLH
Sbjct: 208 NAKSAFINVVKTENLTLMAAKLFTGRTHQIRAHLASLNRYILGDSLYGYKGKYDCRIMLH 267
Query: 222 AH 223
A+
Sbjct: 268 AY 269
>ref|NP_389044.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
sp|O31613|YJBO_BACSU Hypothetical protein yjbO
pir||G69844 conserved hypothetical protein yjbO - Bacillus subtilis
emb|CAB13019.1| (Z99110) similar to hypothetical proteins [Bacillus subtilis]
Length = 283
Score = 85.9 bits (211), Expect = 4e-16
Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 20/190 (10%)
Query: 58 VIFEDENILALFKPPFIES------------------YDLASFFKGWALLHRLDKETSGV 99
+++EDE++L + K P++ S Y L+ RLD++TSG+
Sbjct: 68 ILYEDEHVLVINKQPYVSSIPSREHPSGSIANGIIDHYQTTGVRATVHLVTRLDRDTSGI 127
Query: 100 VLLVKENSEFHLKAKKAFKDRAVKKEYLALTQG-IIEEEREINAPILTFKTTKAFSKISK 158
+L+ K H A K+ VK+ Y A+ G + + E ++API + ++
Sbjct: 128 MLVAKHRFA-HSILSSAQKNGLVKRRYAAVVHGRMAQMEGTVDAPIGRHPDSIIERTVTP 186
Query: 159 KGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKRL 218
GQ+AVT + T + + ++TGRTHQIRVH+ ++ HP+ GDTLY R
Sbjct: 187 DGQKAVTHFYVTCANDDMTSVALQLETGRTHQIRVHMSYLGHPLCGDTLYGGTRQEIGRQ 246
Query: 219 MLHAHKIALL 228
LH+ ++ +
Sbjct: 247 ALHSEHLSFI 256
>gb|AAF78056.1|AF263561_1 (AF263561) 23S rRNA pseudouridine synthase [secondary endosymbiont
of Glycaspis brimblecombei]
Length = 314
Score = 85.9 bits (211), Expect = 4e-16
Identities = 51/175 (29%), Positives = 91/175 (51%), Gaps = 21/175 (12%)
Query: 57 SVIFEDENILALFKPPFIESYDLASFFKGWAL------------------LHRLDKETSG 98
++++ED+ I+ + KP + + A G L +HRLDK+T+G
Sbjct: 74 NIVYEDDEIIVINKPRDLVVHPGAGNPDGTVLNALLYRYPEIINVPRAGIVHRLDKDTTG 133
Query: 99 VVLLVKE-NSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKIS 157
++++ K ++ HL +A + R + +EY A+ G + ++ PI T + I
Sbjct: 134 LMVIAKTIPAQTHLV--EALQLREITREYEAVVNGRMTAGGTVDEPIARHPTKRTHMAIH 191
Query: 158 KKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEP 212
G+ A+T ++ T L++ +++GRTHQIRVH+ HINHP++GD +Y P
Sbjct: 192 PLGKPAITHYRVMEHFRAHTRLRLRLESGRTHQIRVHMAHINHPLVGDPVYGGRP 246
>ref|NP_655191.1| (NC_003995) PseudoU_synth_2, RNA pseudouridylate synthase [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 307
Score = 85.5 bits (210), Expect = 5e-16
Identities = 60/206 (29%), Positives = 107/206 (51%), Gaps = 26/206 (12%)
Query: 58 VIFEDENILALFKPPFIESY-----------DLASF---FKGWAL----LHRLDKETSGV 99
V++ED+++L + KP ++++ +L +F KG +HRLDK+T+G
Sbjct: 87 VVYEDDHVLIVNKPEKMDTHPAEKGGMGTLANLVAFHYQMKGLETKVRHIHRLDKDTTGG 146
Query: 100 VLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER-EINAPILTFKTTKAFSKISK 158
V+ K + + +R +K+ Y AL +G +++++ I+A I + ++S
Sbjct: 147 VVFAKHRIAGAIM-DRLLMERKIKRTYAALVEGKVKKKQGTIDAAIGRDRHHATRRRVSP 205
Query: 159 KGQEAVTIITPLKIINKK--TLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAK 216
KG +A+T + K+ T + + ++TGRTHQIRVH+ + +P++GD LY +
Sbjct: 206 KGDQAITYYKVEEYFKKQNVTFVTLQLETGRTHQIRVHMSYNGNPLVGDVLYGGQTKYMS 265
Query: 217 RLMLHAHKIALLGYEFEAIAPKEFEI 242
R LHA KI L I +E E+
Sbjct: 266 RQALHAMKINFL----HPITKEEIEV 287
>gb|AAF32394.1|AF224466_1 (AF224466) putative pseudouridylate synthase [Haemophilus ducreyi]
Length = 250
Score = 85.1 bits (209), Expect = 6e-16
Identities = 59/222 (26%), Positives = 108/222 (48%), Gaps = 34/222 (15%)
Query: 15 SHKKAKALIDSGLVSIGGKKLMVAR------------KELPKNTHFSVQKVEKPSVIFED 62
S + K I++ LV + G + AR E+ + F Q + +++ ED
Sbjct: 32 SRSRIKVWIENDLVKVNGIIVNRARGKVFGGEQIEIQAEIEEEIRFEPQNIPL-NIVHED 90
Query: 63 ENILALFKPPFIESYDLASFFKGWAL------------------LHRLDKETSGVVLLVK 104
++I+ + KP + + A G L +HRLDK+T+G++++ K
Sbjct: 91 DDIIIINKPKNLVVHPGAGNPDGTVLNALLYYYPPIAEVPRAGIIHRLDKDTTGLMVVAK 150
Query: 105 E-NSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKISKKGQEA 163
++ HL A + R + +EY A+ GI+ + +++ P+ T + + G+ A
Sbjct: 151 NIPAQTHLVT--ALQKRRITREYEAIASGIMTQGGKVDEPMARHPTKRTAMAVHPMGKPA 208
Query: 164 VTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGD 205
+T ++ T L++ ++TGRTHQIRVH+ HI HP++GD
Sbjct: 209 ITHYRIMERFRNYTRLRLRLETGRTHQIRVHMAHIAHPLLGD 250
>ref|NP_253234.1| (NC_002516) pseudouridine synthase [Pseudomonas aeruginosa]
sp|P33640|RLUD_PSEAE Ribosomal large subunit pseudouridine synthase D (Pseudouridylate
synthase) (Uracil hydrolyase)
pir||F83077 pseudouridine synthase PA4544 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG07932.1|AE004868_3 (AE004868) pseudouridine synthase [Pseudomonas aeruginosa]
Length = 320
Score = 85.1 bits (209), Expect = 6e-16
Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 19/169 (11%)
Query: 58 VIFEDENILALFKPPFIESYDLASFFKGWAL------------------LHRLDKETSGV 99
+++EDE+IL + KP + + A G L +HRLDK+T+G+
Sbjct: 85 IVYEDEHILVIDKPAGLVVHPAAGHQDGTLLNALLYHVPDIANVPRAGIVHRLDKDTTGL 144
Query: 100 VLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKISKK 159
+++ K E H K + R+V + Y A+ G+I I+API + +
Sbjct: 145 MVVAK-TLEAHTKLVAQLQARSVSRIYEAIVIGVITSGGTIDAPIGRHGVQRQKMAVVDA 203
Query: 160 GQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLY 208
G+ AV+ L+ T +V ++TGRTHQIRVH+ HI +P++GD +Y
Sbjct: 204 GKVAVSHYRVLERFRAHTHTRVKLETGRTHQIRVHMSHIGYPLVGDPVY 252
>ref|NP_441760.1| (NC_000911) hypothetical protein [Synechocystis sp. PCC 6803]
sp|P74346|YG29_SYNY3 Hypothetical protein slr1629
pir||S76181 hypothetical protein - Synechocystis sp. (strain PCC 6803)
dbj|BAA18440.1| (D90914) ORF_ID:slr1629~hypothetical protein [Synechocystis sp. PCC
6803]
Length = 327
Score = 84.7 bits (208), Expect = 8e-16
Identities = 73/267 (27%), Positives = 125/267 (46%), Gaps = 44/267 (16%)
Query: 14 ISHKKAKALIDSGLVSIGG-----KKLMVARKE-----LPKNTHFSVQKVEKP-SVIFED 62
+S + + LI+SG V G K L++ + +P+ V P +++ED
Sbjct: 45 LSRSRCQKLIESGQVQRNGLVCQDKNLILKTGDRLVVNIPELIPLDVVAQNIPLDILYED 104
Query: 63 ENILALFKPPFIESY-------------------DLASF--FKGWALLHRLDKETSGVVL 101
E ++ + KP + + DLA + ++HRLDK+T+G ++
Sbjct: 105 EQLIIINKPAGLVVHPGPGHPDGTVVNALLAHCPDLAGIGGVQRPGIVHRLDKDTTGAMV 164
Query: 102 LVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEE-EREINAPILTF---KTTKAFSKIS 157
+ K H + K++ ++ Y + G +E + +N P+ + +
Sbjct: 165 VAKTELALH-NLQVQLKEKTARRLYWGIVYGSPKEIQGTVNLPVGRHPGDRQKMGIVPVE 223
Query: 158 KKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKR 217
K G+EAVT L+ I + L+ ++TGRTHQIRVH K + HP++GD LY + S+
Sbjct: 224 KGGREAVTHWRLLERIGNHSWLEFQLETGRTHQIRVHSKQMGHPLVGDNLYTSPGSVNVN 283
Query: 218 L---MLHAHKIALL----GYEFEAIAP 237
L LHAH+++L+ G AIAP
Sbjct: 284 LPGQALHAHQLSLIHPVSGEIITAIAP 310
>ref|NP_359981.1| (NC_003103) ribosomal large subunit pseudouridine synthase C
[EC:4.2.1.70] [Rickettsia conorii]
sp|Q92IS6|RLUC_RICCN Ribosomal large subunit pseudouridine synthase C (Pseudouridylate
synthase) (Uracil hydrolyase)
gb|AAL02882.1| (AE008600) ribosomal large subunit pseudouridine synthase C
[EC:4.2.1.70] [Rickettsia conorii]
Length = 303
Score = 84.3 bits (207), Expect = 1e-15
Identities = 79/258 (30%), Positives = 129/258 (49%), Gaps = 38/258 (14%)
Query: 1 MEKAYKILSVQENISHKKAKALIDSGLVSIGGKKLMVARK-----ELPKNTHFS------ 49
+EKA + Q+ I+ KA ++ L GG K+ + K + P+ F+
Sbjct: 29 IEKALR----QKQITVNAQKA--EASLRVKGGDKIFINDKFNLPVKQPEKLVFTDAEIKL 82
Query: 50 VQKVEKPSVIFEDENILALFKPPFIESYDLASF------------FKG--WALLHRLDKE 95
+K+ +I+ D+N++A+ KP + + +KG + L+HRLDK+
Sbjct: 83 AKKITTDYLIYADDNLIAINKPAGLATQGGTKINLSIDSALKYLNYKGADFKLVHRLDKK 142
Query: 96 TSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGI-IEEEREINAPILTFK--TTKA 152
TSG++L+ K N +K AFK++ V K Y A+T G I+ E+ + I K T K
Sbjct: 143 TSGLLLIAK-NYLSSVKLHNAFKEKLVVKTYFAVTYGKPIKNVGEVRSNIEKSKGSTPKI 201
Query: 153 FSKISKKGQEAVTIITPLKII-NKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNE 211
S+ G+ A+T LK + N L++ TGR HQ+R+H K + PI+GD Y N+
Sbjct: 202 TDIDSENGKLAITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLHAKLLGCPILGDDKYGNK 261
Query: 212 PSL--AKRLMLHAHKIAL 227
+ +K + LHA+ I L
Sbjct: 262 EIMPYSKYMFLHANNICL 279
>ref|NP_660679.1| (NC_004061) ribosomal large subunit pseudouridine synthase
[Buchnera aphidicola str. Sg (Schizaphis graminum)]
gb|AAM67890.1| (AE014110) ribosomal large subunit pseudouridine synthase [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
Length = 314
Score = 84.3 bits (207), Expect = 1e-15
Identities = 64/210 (30%), Positives = 103/210 (48%), Gaps = 30/210 (14%)
Query: 57 SVIFEDENILALFKPPFIESYD-------LASFF-------KGWALLHRLDKETSGVVLL 102
++++ED +L + KP I + + +F K L+HR+D++TSGV++L
Sbjct: 93 NILYEDNYLLIINKPSGIAVHGGSGINLGVIEYFRKIRPLEKFLELVHRIDRDTSGVLML 152
Query: 103 VKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEE-REINAPILT--FKTTKAFSKISKK 159
K+ L K +++ V+K+Y+AL G+ R+++ P+L K + I+K+
Sbjct: 153 AKKRRSL-LSLHKQIREKKVQKKYIALVHGLWPLSLRKVSEPLLKTHLKNKQRKILINKE 211
Query: 160 GQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYN--------NE 211
G+ A T K TL+ + KTGRTHQIRVH H HPI+ D Y
Sbjct: 212 GKPAETYFKIKKQYLFTTLVSITPKTGRTHQIRVHTLHAGHPILFDKRYGKRDLDCNIKN 271
Query: 212 PSLAKRLMLHAHKIALL----GYEFEAIAP 237
+ RL+LHA I + G + +AP
Sbjct: 272 KTKINRLLLHATSINFIHPETGKKMHIVAP 301
>ref|NP_283696.1| (NC_003116) putative ribosomal large subunit pseudouridine synthase
D [Neisseria meningitidis Z2491]
pir||D81937 probable ribosomal large subunit pseudouridine synthase D NMA0908
[imported] - Neisseria meningitidis (group A strain
Z2491)
emb|CAB84185.1| (AL162754) putative ribosomal large subunit pseudouridine synthase
D [Neisseria meningitidis Z2491]
Length = 374
Score = 84.3 bits (207), Expect = 1e-15
Identities = 69/251 (27%), Positives = 118/251 (46%), Gaps = 47/251 (18%)
Query: 30 IGGKKLMVARKELPKNTHFSVQKVEKPSVIFEDENILALFKPPFIESYDLASFFKGWAL- 88
IGG+++ V + +N F V + +++ED+ ++ + KP + + A + G L
Sbjct: 80 IGGEQIRVTVRPSEENLAF-VPEPMALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLN 138
Query: 89 -----------------LHRLDKETSGVVLLVKENSEFHLKAKKAF----KDRAVKKEYL 127
+HRLDKETSG++++ K L A+ + ++R VK+ Y
Sbjct: 139 GLLAHCPELSQIPRAGIVHRLDKETSGLMVVAKT-----LPAQNSLVWQLQERTVKRIYR 193
Query: 128 ALTQGIIEEEREINAPILTFKTTKAFSKISK-KGQEAVTIITPLKIINKKTLLKVGIKTG 186
A+ GI+ + +I I + + K G+ AVT + L+ + ++ ++TG
Sbjct: 194 AVANGIVPFDGKIETQIGRDPHNRLKMAVVKFGGKPAVTHVKVLERYLAHSYIECSLETG 253
Query: 187 RTHQIRVHLKHINHPIIGDTLYNNE------------PSLAKRLMLHAHKIALLGYE--- 231
RTHQIRVH++ NHP+ GD +Y N SL R LHA++++ E
Sbjct: 254 RTHQIRVHMREANHPLAGDPVYGNPRHPCGDTVKEAVKSLGARQALHAYRLSFTHPESGE 313
Query: 232 ---FEAIAPKE 239
FEA P +
Sbjct: 314 TVSFEAPIPDD 324
>ref|NP_359416.1| (NC_003098) Ribosomal large subunit pseudouridine synthase D
[Streptococcus pneumoniae R6]
gb|AAL00627.1| (AE008547) Ribosomal large subunit pseudouridine synthase D
[Streptococcus pneumoniae R6]
Length = 291
Score = 84.3 bits (207), Expect = 1e-15
Identities = 60/183 (32%), Positives = 99/183 (53%), Gaps = 17/183 (9%)
Query: 59 IFEDENILALFKPPFIESY----------DLASFFKGWA--LLHRLDKETSGVVLLVKEN 106
+++D++++ + KP ++++ + S + G ++HRLD ETSG+VL K
Sbjct: 84 VYQDQHLIIVNKPEGMKTHGNQPNEIALLNHVSTYVGQTCYVVHRLDMETSGLVLFAKNP 143
Query: 107 SEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKI--SKKGQEAV 164
+ + + + + +EY AL G I + + + +I +K G+ A
Sbjct: 144 FILPI-LNRLLEKKEISREYWALVDGNINRKELVFRDKIGRDRHDRRKRIVDAKNGKYAE 202
Query: 165 TIITPLK-IINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKRLMLHAH 223
T ++ LK NK +L +KTGRTHQIRVHL H N PI+GD LYN++ S RLMLHA
Sbjct: 203 THVSRLKQFSNKTSLAHCKLKTGRTHQIRVHLLHHNLPILGDPLYNSK-SKTSRLMLHAF 261
Query: 224 KIA 226
+++
Sbjct: 262 RLS 264
>ref|NP_298229.1| (NC_002488) ribosomal large subunit pseudouridine synthase D
[Xylella fastidiosa 9a5c]
pir||F82742 ribosomal large subunit pseudouridine synthase D XF0939 [imported]
- Xylella fastidiosa (strain 9a5c)
gb|AAF83749.1|AE003933_1 (AE003933) ribosomal large subunit pseudouridine synthase D
[Xylella fastidiosa 9a5c]
Length = 331
Score = 83.6 bits (205), Expect = 2e-15
Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 20/202 (9%)
Query: 58 VIFEDENILALFKPPFIESYDLASFFKGW------------------ALLHRLDKETSGV 99
+++EDE++ L KP + + A G ++HRLDK+TSGV
Sbjct: 92 ILYEDEHVFVLNKPAGLVVHPGAGNPDGTLVNALLHRDPALAAVPRAGVVHRLDKDTSGV 151
Query: 100 VLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKISKK 159
++V + + R V ++YLA+ + +NA I + +S
Sbjct: 152 -MVVARTLQAQTALVEQLSSRQVHRQYLAVVVSALVSGGTVNAAIERHPRDRLRMAVSDT 210
Query: 160 GQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKRLM 219
G+EAVT + T L+ + TGRTHQIRVH+ H+ HPI+GD LY L K +
Sbjct: 211 GKEAVTHYRLRERFRAHTALECRLDTGRTHQIRVHMAHLRHPIVGDRLYGGSLKLPK-VG 269
Query: 220 LHAHKIALLGYEFEAIAPKEFE 241
A + L G++ +A+ + E
Sbjct: 270 TDALVVMLRGFKRQALHAEVLE 291
>ref|NP_603548.1| (NC_003454) Ribosomal large subunit pseudouridine synthase D
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gb|AAL94847.1| (AE010576) Ribosomal large subunit pseudouridine synthase D
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Length = 288
Score = 83.2 bits (204), Expect = 2e-15
Identities = 75/248 (30%), Positives = 121/248 (48%), Gaps = 44/248 (17%)
Query: 17 KKAKALIDSGL----VSIGGKKLMVARKELPKNTHFSVQKVEKPS----------VIFED 62
K+ K GL + + GK++ K++ K V + EK + + +ED
Sbjct: 20 KETKGYSSRGLRNLEIYLNGKRIKNNAKKIKKLNRIVVIEKEKSTGIKAMDIPIDIAYED 79
Query: 63 ENILALFKPPFIESYD------------LASFFK---GWALL----HRLDKETSGVVLLV 103
EN+L + K P+I + + ++F+ G L+ +RLD TSG++++
Sbjct: 80 ENLLIVNKEPYIIVHPTQKKVDKTLANAVVNYFEKTLGKTLVPRFYNRLDMNTSGLIIIA 139
Query: 104 KENSEFHLKAKKAFKDRA-VKKEYLALTQGIIEEERE-INAPILTFKTTKAFSKISKK-- 159
K + + +D+ VKK Y + GIIE++ I PI ++S++
Sbjct: 140 K-----NAYTQAFLQDKTEVKKTYKVIASGIIEKDDFFIKIPIGKVGDDLRRIELSEENG 194
Query: 160 GQEAVTIITPLKIINKK--TLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKR 217
G+ A T I L+ +K T L+ + TGRTHQIR HL I H ++GD LY + LAKR
Sbjct: 195 GKSAKTHIKVLEKNYEKNITFLEARLYTGRTHQIRAHLSLIGHSLVGDELYGGDMKLAKR 254
Query: 218 LMLHAHKI 225
MLHA+K+
Sbjct: 255 QMLHAYKL 262
>ref|NP_273746.1| (NC_003112) ribosomal large subunit pseudouridine synthase D
[Neisseria meningitidis MC58]
pir||A81168 ribosomal large chain pseudouridine synthase D NMB0704 [imported] -
Neisseria meningitidis (group B strain MD58)
gb|AAF41121.1| (AE002425) ribosomal large subunit pseudouridine synthase D
[Neisseria meningitidis MC58]
Length = 374
Score = 83.2 bits (204), Expect = 2e-15
Identities = 66/247 (26%), Positives = 116/247 (46%), Gaps = 39/247 (15%)
Query: 30 IGGKKLMVARKELPKNTHFSVQKVEKPSVIFEDENILALFKPPFIESYDLASFFKGWAL- 88
IGG+++ V + +N F V + +++ED+ ++ + KP + + A + G L
Sbjct: 80 IGGEQICVTVRPSEENLAF-VPEPMALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLN 138
Query: 89 -----------------LHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQ 131
+HRLDKETSG++++ K + ++ ++R VK+ Y A+
Sbjct: 139 GLLAHCPELSQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVRQ-LQERTVKRIYRAVAN 197
Query: 132 GIIEEEREINAPILTFKTTKAFSKISK-KGQEAVTIITPLKIINKKTLLKVGIKTGRTHQ 190
GI+ + +I I + + K G+ AVT + L+ + ++ ++TGRTHQ
Sbjct: 198 GIVPFDGKIETQIGRDPHNRLKMAVVKFGGKPAVTHVKVLERYLTHSYIECSLETGRTHQ 257
Query: 191 IRVHLKHINHPIIGDTLYNNE------------PSLAKRLMLHAHKIALLGYE------F 232
IRVH++ NHP+ D +Y N SL R LHA++++ E F
Sbjct: 258 IRVHMREANHPLAADPVYGNPRHPCGDTVKEAVKSLGARQALHAYRLSFTHPESGETVSF 317
Query: 233 EAIAPKE 239
EA P +
Sbjct: 318 EAPIPND 324
>ref|NP_493778.1| (NM_061377) K07E8.7.p [Caenorhabditis elegans]
sp|O16686|YK27_CAEEL Hypothetical 50.0 kDa protein K07E8.7 in chromosome IV
pir||T32044 hypothetical protein K07E8.7 - Caenorhabditis elegans
gb|AAB66153.1| (AF016678) Hypothetical protein K07E8.7 [Caenorhabditis elegans]
Length = 432
Score = 82.8 bits (203), Expect = 3e-15
Identities = 52/168 (30%), Positives = 83/168 (48%), Gaps = 16/168 (9%)
Query: 58 VIFEDENILALFKPPFIESYDLASFF--------------KGWALLHRLDKETSGVVLLV 103
VI E +++ + KPP + + + G +LHRLD+ TSGV+L
Sbjct: 150 VISETDDLFVVEKPPSLPVHTCGQYAIHTVLGQLRVNEGRTGLRVLHRLDRATSGVLLFA 209
Query: 104 KENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREI-NAPILTFKTTKAFSKISKKGQE 162
K N E L+ K K KEY+ G+ +E ++ PI + + G++
Sbjct: 210 K-NYETDLEFKTTLKQGEWSKEYICKVDGVFPDEEQVCEQPIGPLVISMGIQCVRPDGKD 268
Query: 163 AVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNN 210
A + L +++++V I+TGRTHQIRVH + + HPI GD +YN+
Sbjct: 269 AKSRFRKLWSDGTQSVVQVHIETGRTHQIRVHSQFLGHPIAGDQIYNS 316
>sp|O50310|YBC5_CHLVI Hypothetical 36.7 kDa protein in BCHI 5'region
pir||T17190 conserved hypothetical protein CAB06297 - Chlorobium vibrioforme
emb|CAB06297.1| (Z83933) hypothetical protein [Chlorobium vibrioforme]
Length = 327
Score = 82.8 bits (203), Expect = 3e-15
Identities = 65/237 (27%), Positives = 111/237 (46%), Gaps = 43/237 (18%)
Query: 12 ENISHKKAKALIDSGLVSIGGKKLMV-ARKELPKNTHFSVQKVEKP---------SVIFE 61
EN++ K +A I+ G V + GK + R + + H + + P ++++E
Sbjct: 23 ENMTRNKVQAAIEEGRVLVNGKPVKSNYRVKSCDHIHLTFLRPPAPELAPEDIPITILYE 82
Query: 62 DENILALFK-------PPF------------------IESYDLASFFKGWALLHRLDKET 96
D++++ + K P F + D G ++HRLDK+T
Sbjct: 83 DDDLMVIDKEAGMVVHPAFGNWTGTLANAILHHLGKDADELDKTEMRPG--IVHRLDKDT 140
Query: 97 SGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIE-EEREINAPI-LTFKTTKAFS 154
SG++++ K + H K + F +R V+K Y A+ G+ + E I I + K K +
Sbjct: 141 SGLIIIAKNPTALH-KLARQFANRQVEKVYKAIVWGVPKAESGTIKTNIGRSHKNRKVMA 199
Query: 155 KISKKGQEAVTIITPLKIINKK---TLLKVGIKTGRTHQIRVHLKHINHPIIGDTLY 208
+G E IT +++ +L+ V + TGRTHQIRVHL+H+ H I+GD Y
Sbjct: 200 NFPYEGAEGKHAITDYQVVEDLGYFSLMDVTLHTGRTHQIRVHLQHLGHSILGDETY 256
>ref|NP_218779.1| (NC_000919) conserved hypothetical protein [Treponema pallidum]
pir||A71338 conserved hypothetical protein TP0339 - syphilis spirochete
gb|AAC65324.1| (AE001213) conserved hypothetical protein [Treponema pallidum]
Length = 331
Score = 82.8 bits (203), Expect = 3e-15
Identities = 55/146 (37%), Positives = 78/146 (52%), Gaps = 11/146 (7%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTF 147
++HRLDK+TSGV LL N H ++FK R V+K YLAL QG+ R + T
Sbjct: 158 IVHRLDKDTSGV-LLTSRNMHAHEALVRSFKKRQVRKVYLALLQGV--PARGVGVIETTI 214
Query: 148 ------KTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHP 201
+T S+ KG+ A T +KI ++ + TGRTHQIRVH +++ P
Sbjct: 215 VRDRRRRTRFVASEDFSKGKYARTRYKVMKICGACAFVQFLLDTGRTHQIRVHARYLGCP 274
Query: 202 IIGDTLY--NNEPSLAKRLMLHAHKI 225
++GD LY N + LMLHA+ +
Sbjct: 275 VVGDPLYGSRNICGIPTTLMLHAYAV 300
>ref|NP_220643.1| (NC_000963) unknown [Rickettsia prowazekii]
sp|Q9ZDR7|RLUC_RICPR Ribosomal large subunit pseudouridine synthase C (Pseudouridylate
synthase) (Uracil hydrolyase)
pir||F71680 hypothetical protein RP258 - Rickettsia prowazekii
emb|CAA14720.1| (AJ235271) unknown [Rickettsia prowazekii]
Length = 303
Score = 82.8 bits (203), Expect = 3e-15
Identities = 69/214 (32%), Positives = 113/214 (52%), Gaps = 29/214 (13%)
Query: 51 QKVEKPSVIFEDENILALFKPPFIE---------SYDLASFFKGWA-----LLHRLDKET 96
+K+ +I+ED++++A+ KP + S D A + + L+HRLDKET
Sbjct: 84 KKILTDYLIYEDDHLIAINKPASLATQGGSKINLSIDSALKYLNYQGADFKLVHRLDKET 143
Query: 97 SGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGI-IEEEREINAPILTFKTTKAFSK 155
SG++L+ K N +K AFK++ V K+Y A+T G ++ + + I K+ + SK
Sbjct: 144 SGLLLIAK-NYLSSVKLHNAFKEKLVIKKYFAITYGRPVKNVGTVKSNI--GKSKRRLSK 200
Query: 156 I----SKKGQEAVTIITPLKIINKKT-LLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNN 210
I S G+ A+T LK +N L++ TGR HQ+R+H + + PI+GD Y N
Sbjct: 201 IANIDSDDGKLAITYYKLLKSLNNNLFLIEFMPVTGRMHQLRLHAQLLGCPILGDDKYGN 260
Query: 211 EPSL--AKRLMLHAHKIALLGYEFEAIAPKEFEI 242
+ + +K + LHA+ I Y E I KE ++
Sbjct: 261 KEIMPYSKYMFLHANNI----YLSETIVGKEIKL 290
>ref|NP_269281.1| (NC_002737) conserved hypothetical protein [Streptococcus pyogenes]
[Streptococcus pyogenes M1 GAS]
gb|AAK34002.1| (AE006555) conserved hypothetical protein [Streptococcus pyogenes
M1 GAS]
Length = 301
Score = 82.0 bits (201), Expect = 5e-15
Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 23/188 (12%)
Query: 58 VIFEDENILALFKP-------PFIESYDLASFFKGWA-----------LLHRLDKETSGV 99
++ ED++ L + KP I S +A+F K + ++ RLD++TSG+
Sbjct: 78 IVHEDDHFLVINKPIGFASIPSAIHSNTIANFIKAYYVDNHYLDQQVHIVTRLDRDTSGL 137
Query: 100 VLLVKENSEFHLKAKKAFKDRAVKKEYLALTQG--IIEEEREINAPILTFKTTKAFSKIS 157
+L K H + K + R+++K Y AL G ++ +E +I API K + +
Sbjct: 138 MLFAKHGYA-HARLDKQLQTRSIEKRYFALVSGNGMLPDEGDIIAPIGRSKDSIITRAVD 196
Query: 158 KKGQEAVTIITPLKIINKKT-LLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLA- 215
G+ A T + ++ L+ + + TGRTHQIRVH HI P++GD LY L
Sbjct: 197 PMGKYAKTSYKVVARYSENVHLVDIKLHTGRTHQIRVHFAHIGFPLLGDDLYGGRLDLGI 256
Query: 216 KRLMLHAH 223
R LH H
Sbjct: 257 TRQALHCH 264
>ref|NP_356602.1| (NC_003063) AGR_L_1625p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_534526.1| (NC_003305) ribosomal large subunit pseudouridine synthase A
[Agrobacterium tumefaciens str. C58 (U. Washington)]
gb|AAK89387.1| (AE008280) AGR_L_1625p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL44842.1| (AE009334) ribosomal large subunit pseudouridine synthase A
[Agrobacterium tumefaciens str. C58 (U. Washington)]
Length = 222
Score = 82.0 bits (201), Expect = 5e-15
Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 19/187 (10%)
Query: 57 SVIFEDENILALFKPPFIESYD-------------LASFFKGWALLHRLDKETSGVVLLV 103
+++ D+++L L KP + S + F +++RLDK+TSG+VL+
Sbjct: 19 TIVHRDDDLLVLDKPSGLLSVPGRDPALSDSLMTRVQKQFPKALMINRLDKDTSGIVLM- 77
Query: 104 KENSEFHLKAKKAFKDRAVKKEYLALTQGIIE-EEREINAPILTFKTTKAFSKIS-KKGQ 161
N + H F+ R +K Y+A+ G + EE E++ P+ K ++ + G+
Sbjct: 78 SLNRKAHAAIAAQFEKRETRKSYVAIVWGTVAGEEGEVDLPLAIDPDNKPRHRVDHENGK 137
Query: 162 EAVTIITPLKIIN-KKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSL--AKRL 218
A ++ L+ + T L + TGRTHQ+RVH+K + HPI+GD Y +L A RL
Sbjct: 138 PAQSLWRVLERLPLPATRLALTPLTGRTHQLRVHMKALGHPILGDEFYAEGEALTAAPRL 197
Query: 219 MLHAHKI 225
MLHA ++
Sbjct: 198 MLHAQEV 204
>ref|NP_660729.1| (NC_004061) ribosomal large subunit pseudouridine synthase d
[Buchnera aphidicola str. Sg (Schizaphis graminum)]
gb|AAM67940.1| (AE014115) ribosomal large subunit pseudouridine synthase d
[Buchnera aphidicola str. Sg (Schizaphis graminum)]
Length = 315
Score = 82.0 bits (201), Expect = 5e-15
Identities = 59/202 (29%), Positives = 100/202 (49%), Gaps = 31/202 (15%)
Query: 30 IGGKKLMV--ARKELPKNTHFSVQKVEKPSVIFEDENILALFKPP--------------- 72
+GG+K+ + ++LP N ++ + I+ED NIL + KPP
Sbjct: 60 LGGEKITIYSTDEKLPINLPQNIAL----NTIYEDSNILIINKPPGLVVHPGAGNQDGTI 115
Query: 73 ---FIESYDLASFFKGWALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLAL 129
+ Y S ++HRLDK+TSG++++ K ++ K K R + ++Y +
Sbjct: 116 LNALLYRYTNISSIPRCGIIHRLDKDTSGLMVIAKTIFSYN-KLVTLLKKRKIIRKYQGI 174
Query: 130 TQGIIEEEREINAPILTFKTTKAFSKISKKGQEAVTIITPLKIINK---KTLLKVGIKTG 186
+G + +N PI+ + G+++ IT KIIN+ T + ++TG
Sbjct: 175 IKGNMISGGIVNYPIMRHPFKRICMTTDSLGKKS---ITHYKIINRFKFHTHVSFRLETG 231
Query: 187 RTHQIRVHLKHINHPIIGDTLY 208
RTHQIRVH+ HI +P++GD LY
Sbjct: 232 RTHQIRVHMLHIGYPLLGDPLY 253
>ref|NP_266520.1| (NC_002662) pseudouridine synthase [Lactococcus lactis subsp.
lactis]
gb|AAK04462.1|AE006273_8 (AE006273) pseudouridine synthase [Lactococcus lactis subsp.
lactis]
Length = 293
Score = 81.6 bits (200), Expect = 7e-15
Identities = 62/242 (25%), Positives = 108/242 (44%), Gaps = 34/242 (14%)
Query: 20 KALIDSGLVSIGGKKLMVARKELPKNTHFSVQKVEKP------------SVIFEDENILA 67
K D G +++ G++ + L K+ +V ++P +V+FED++ L
Sbjct: 30 KVKFDGGKITVNGQEKNAIYR-LEKDDLVTVTVPDEPDNEKLIPDDFPLNVLFEDDHYLV 88
Query: 68 LFKPPFIESYD--------LASFFKGWA-----------LLHRLDKETSGVVLLVKENSE 108
+ KP S +++ KG+ ++ RLD++TSG++ L K
Sbjct: 89 VEKPAGKPSITGSLHPTGAMSNAVKGYISQKNYANQTVHIITRLDRDTSGLMFLAKHRYA 148
Query: 109 FHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPI--LTFKTTKAFSKISKKGQEAVTI 166
L + F+D K+ + + + + I+ PI + + +K ++A+T
Sbjct: 149 HALMNQHKFRDTMEKRYFAIVNDQDLPDSGRIDLPIGRRDDSIIQRQVRFDEKAKDALTS 208
Query: 167 ITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKRLMLHAHKIA 226
+ N LL + + TGRTHQIRVH H+ +P+IGD LY L R LH H +
Sbjct: 209 YVVAERKNDLALLDIILHTGRTHQIRVHFSHLGYPLIGDDLYGGNHDLISRQALHCHHLQ 268
Query: 227 LL 228
L
Sbjct: 269 FL 270
>ref|NP_230535.1| (NC_002505) pseudouridine synthase Rlu family protein [Vibrio
cholerae]
pir||G82266 pseudouridine synthase Rlu family protein VC0888 [imported] -
Vibrio cholerae (group O1 strain N16961)
gb|AAF94050.1| (AE004173) pseudouridine synthase Rlu family protein [Vibrio
cholerae]
Length = 244
Score = 81.6 bits (200), Expect = 7e-15
Identities = 53/161 (32%), Positives = 84/161 (51%), Gaps = 22/161 (13%)
Query: 89 LHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTF- 147
LHRLD+ TSGV++ +S+ + F + ++K Y A+ +G IEE ++ P+
Sbjct: 50 LHRLDRPTSGVLVFAL-SSQIASEVMPMFANHEMEKTYHAIVRGWIEEANVLDYPLKEEL 108
Query: 148 -KTTKAFSKISKKGQEAVTIITPLKIIN-----------KKTLLKVGIKTGRTHQIRVHL 195
K F+K K+ Q AVT PL + + L+++ KTGR HQ+R H+
Sbjct: 109 DKIADKFAKQDKEAQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQLRRHM 168
Query: 196 KHINHPIIGDTLYNN--------EPSLAKRLMLHAHKIALL 228
H+ HPI+GDT + + E A+RLMLHA ++ +
Sbjct: 169 AHLRHPIVGDTTHGDGVHNRLFREHFSAQRLMLHASELRFM 209
>sp|Q45480|YLYB_BACSU Hypothetical protein ylyB
gb|AAB57767.1| (U48870) orf-X; hypothetical protein; Method: conceptual
translation supplied by author [Bacillus subtilis]
Length = 303
Score = 81.6 bits (200), Expect = 7e-15
Identities = 54/163 (33%), Positives = 89/163 (54%), Gaps = 15/163 (9%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIE-EEREINAPILT 146
++HR+DK+TSG+ L+V +N H ++ V ++Y A+ G+I ++ I+API
Sbjct: 133 IVHRIDKDTSGL-LMVAKNDMAHESLVNQLVNKTVTRKYTAVVHGLISHDDGTIDAPIGR 191
Query: 147 FKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDT 206
K + +++ G+ AVT L+ TL++ ++TGRTHQIRVH+K+I P+ GD
Sbjct: 192 DKKDRQSMTVTRDGKNAVTHFHVLERFQDFTLVECQLETGRTHQIRVHMKYIGFPLAGDP 251
Query: 207 LYNNEPSL-AKRLMLHAHKIALLGY---------EFEAIAPKE 239
Y ++ LHA +LG+ EFEA P++
Sbjct: 252 KYGPRKTIDFNGQALHA---GVLGFDHPRTGEYVEFEAPLPED 291
>ref|NP_282921.1| (NC_003116) ribosomal large subunit pseudouridine synthase C
[Neisseria meningitidis Z2491]
pir||E81998 pseudouridylate synthase (EC 4.2.1.70) C rRNA-specific NMA0070
[imported] - Neisseria meningitidis (group A strain
Z2491)
emb|CAB83386.1| (AL162752) ribosomal large subunit pseudouridine synthase C
[Neisseria meningitidis Z2491]
Length = 330
Score = 81.3 bits (199), Expect = 9e-15
Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 38/226 (16%)
Query: 37 VARKELPKNTHFSVQKVEKPSVIFEDENILALFKPPFIESYDLASFFKG----------- 85
VA KE+P +V V++ED+ +L + KP + + + G
Sbjct: 76 VAEKEMPSERRAAVP-ARAFDVVYEDDALLVIDKPSGVAVHGGSGVSFGVIEQLRRARPE 134
Query: 86 ---WALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINA 142
L+HRLDK+TSG++++ K+ S +K +A ++ KK YLAL G + ++ +
Sbjct: 135 ARYLELVHRLDKDTSGLLMVAKKRSAL-VKLHEAIRNDHPKKIYLALGVGKLPDDN-FHV 192
Query: 143 PILTFKTTKA----FSKISKKGQEAVTIITPLKI----------INKKTLLKVGIKTGRT 188
+ FK T A ++S+ GQ A T+ L ++ TL++ +KTGRT
Sbjct: 193 KLPLFKYTGAQGEKMVRVSEDGQSAHTVFRVLSRFSDGILHGVGLSHLTLVRATLKTGRT 252
Query: 189 HQIRVHLKHINHPIIGDTLYNN-------EPSLAKRLMLHAHKIAL 227
HQIRVHL+ PI GD Y + + KR+ LHA ++ L
Sbjct: 253 HQIRVHLQSQGCPIAGDERYGDYQANRRLQKLGLKRMFLHASELHL 298
>gb|AAG10501.1|AF279106_63 (AF279106) predicted ribosomal large subunit pseudouridine synthase
D [uncultured proteobacterium EBAC31A08]
Length = 310
Score = 81.3 bits (199), Expect = 9e-15
Identities = 65/231 (28%), Positives = 105/231 (45%), Gaps = 31/231 (13%)
Query: 15 SHKKAKALIDSGLVSIGGKKLMVARKELPKNTHFSVQKVEKPSVI-----------FEDE 63
S + K I+ G V I G+ + R ++ +N + E+ V FE+E
Sbjct: 27 SRTQIKKWIEEGRVLINGE-VSQPRDKVYENDQIELSPKEEQKVSWEAQDIDFEIHFENE 85
Query: 64 NILALFKPPFIESYDLASFFKGW------------------ALLHRLDKETSGVVLLVKE 105
+ + + KP + + + + G ++HRLDK+TSG+ LLV
Sbjct: 86 DFIIINKPAGLIMHPGSGCYDGTLANGLIYKFPELINIPRSGIVHRLDKDTSGI-LLVAR 144
Query: 106 NSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKISKKGQEAVT 165
N F ++R V K+Y ++ G I PI K + I + G++A+T
Sbjct: 145 NESFRNFFINEMQERRVVKKYTSIVIGSTLGSFSIEEPIGRDKNNRTKMAIREDGKDALT 204
Query: 166 IITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAK 216
+ + I ++L + I+TGRTHQIRVHL PIIGD Y+ S+A+
Sbjct: 205 FVKLKENIGNYSVLDIRIETGRTHQIRVHLSSKKLPIIGDKTYDPSRSIAR 255
>ref|NP_607212.1| (NC_003485) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
gb|AAL97711.1| (AE010035) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
Length = 301
Score = 81.3 bits (199), Expect = 9e-15
Identities = 58/188 (30%), Positives = 91/188 (47%), Gaps = 23/188 (12%)
Query: 58 VIFEDENILALFKP-------PFIESYDLASFFKGWA-----------LLHRLDKETSGV 99
++ ED++ L + KP I S +A+F K + ++ RLD++TSG+
Sbjct: 78 IVHEDDHFLVINKPIGFASIPSAIHSNTIANFIKAYYVDNHYLDQQVHIVTRLDRDTSGL 137
Query: 100 VLLVKENSEFHLKAKKAFKDRAVKKEYLALTQG--IIEEEREINAPILTFKTTKAFSKIS 157
+L K H + K + R+++K Y AL G + +E +I API K + +
Sbjct: 138 MLFAKHGYA-HARLDKQLQTRSIEKRYFALVSGNGTLPDEGDIIAPIGRSKDSIITRAVD 196
Query: 158 KKGQEAVTIITPLKIINKKT-LLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLA- 215
G+ A T + ++ L+ + + TGRTHQIRVH HI P++GD LY L
Sbjct: 197 PMGKYAKTSYKVVARYSENVHLVDIKLHTGRTHQIRVHFAHIGFPLLGDDLYGGRLDLGI 256
Query: 216 KRLMLHAH 223
R LH H
Sbjct: 257 TRQALHCH 264
>ref|NP_245929.1| (NC_002663) RluC [Pasteurella multocida]
sp|Q9CM51|RLUC_PASMU Ribosomal large subunit pseudouridine synthase C (Pseudouridylate
synthase) (Uracil hydrolyase)
gb|AAK03076.1| (AE006138) RluC [Pasteurella multocida]
Length = 326
Score = 80.9 bits (198), Expect = 1e-14
Identities = 61/200 (30%), Positives = 102/200 (50%), Gaps = 26/200 (13%)
Query: 50 VQKVEKPSVIFEDENILALFKPPFIESYDLASFFKG--------------WALLHRLDKE 95
V ++EK ++FEDE +L L KP I + + G L+HRLD++
Sbjct: 94 VSQLEK-QILFEDECLLVLNKPSGIAVHGGSGLSFGVIEALRTLRPDARFLELVHRLDRD 152
Query: 96 TSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEE-REINAPILT--FKTTKA 152
TSG++L+ K+ S + +++ V+K+YLAL +G + + + AP+L + +
Sbjct: 153 TSGILLVAKKRSALR-SLHEQLREKTVQKDYLALVRGQWQSHCKVVKAPLLKNELSSGER 211
Query: 153 FSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEP 212
++S++G+ + T + + TL+K TGRTHQIRVH ++ HPI D Y ++
Sbjct: 212 IVRVSEQGKPSETRFSIEERYEYATLVKASPVTGRTHQIRVHTQYAGHPIALDDKYGDKH 271
Query: 213 SLAK-------RLMLHAHKI 225
+ RL LHA I
Sbjct: 272 FDEQMTQLGLTRLFLHAFSI 291
>ref|NP_296760.1| (NC_002620) RNA pseudouridylate synthase family protein [Chlamydia
muridarum]
gb|AAF73552.1| (AE002305) RNA pseudouridylate synthase family protein [Chlamydia
muridarum]
Length = 274
Score = 80.9 bits (198), Expect = 1e-14
Identities = 63/192 (32%), Positives = 95/192 (48%), Gaps = 19/192 (9%)
Query: 50 VQKVEKPS--VIFEDENILALFKPPFIESYDLASFFKGWALLHRLDKETSGVVLLVKENS 107
+Q +E+ S +++EDE++ KP S LA L+HRLD++TSG +L K
Sbjct: 61 LQIIERSSAQLLWEDEHLCIYNKPAKQTSEALACQLHVH-LVHRLDRDTSGCILFAKHEK 119
Query: 108 EFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKIS---------K 158
+ FK R + K Y+AL G ++ + I+T T +I K
Sbjct: 120 AI-TPITQLFKTRQIDKRYIALVFGHPRQQ----SGIITTYTAPCHRRIGAVLFGNTDEK 174
Query: 159 KGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNN--EPSLAK 216
G++ +T L +K LL TGRTHQIR+H+K I HPI+GD Y N +P
Sbjct: 175 LGKKTITEWEVLTHYSKYALLLCRPITGRTHQIRLHMKTIGHPIVGDIDYGNKEQPKHVV 234
Query: 217 RLMLHAHKIALL 228
R +LHA+ + +
Sbjct: 235 RPLLHANSLCFI 246
>ref|NP_246775.1| (NC_002663) RsuA [Pasteurella multocida]
gb|AAK03920.1| (AE006221) RsuA [Pasteurella multocida]
Length = 219
Score = 80.9 bits (198), Expect = 1e-14
Identities = 51/142 (35%), Positives = 82/142 (56%), Gaps = 6/142 (4%)
Query: 90 HRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER-EINAPILTFK 148
HRLD TSG++L + K+ F++R KK Y AL G +EE++ E+N P++
Sbjct: 61 HRLDMSTSGLILFALSKVADR-ELKRQFREREPKKHYQALVWGHLEEDQGEVNLPLICDW 119
Query: 149 TTKAFSKIS-KKGQEAVTIITPL-KIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDT 206
+ KI ++G+ A+T+ L + N T +K+ TGR+HQ+R+H+ + HPI+GD
Sbjct: 120 ENRPRQKICFERGKPALTLYEVLARYPNNTTRVKLTPITGRSHQLRLHMLALGHPILGDK 179
Query: 207 LY--NNEPSLAKRLMLHAHKIA 226
Y +L+ RL LHA ++A
Sbjct: 180 FYAPPQAKALSPRLCLHAEQLA 201
>ref|NP_273256.1| (NC_003112) ribosomal large subunit pseudouridine synthase C
[Neisseria meningitidis MC58]
pir||H81225 ribosomal large chain pseudouridine synthase C NMB0198 [imported] -
Neisseria meningitidis (group B strain MD58)
gb|AAF40655.1| (AE002377) ribosomal large subunit pseudouridine synthase C
[Neisseria meningitidis MC58]
Length = 330
Score = 80.5 bits (197), Expect = 1e-14
Identities = 68/226 (30%), Positives = 108/226 (47%), Gaps = 38/226 (16%)
Query: 37 VARKELPKNTHFSVQKVEKPSVIFEDENILALFKPPFIESYDLASFFKG----------- 85
VA KE+P +V V++ED+ +L + KP + + + G
Sbjct: 76 VAEKEMPSERRAAVP-ARAFDVVYEDDALLVIDKPSGVAVHGGSGVSFGVIEQLRRARPE 134
Query: 86 ---WALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINA 142
L+HRLDK+TSG++++ K+ S +K +A ++ KK YLAL G + ++ +
Sbjct: 135 AKYLELVHRLDKDTSGLLMVAKKRSAL-VKLHEAIRNDHPKKIYLALGVGKLPDDN-FHV 192
Query: 143 PILTFKTTKA----FSKISKKGQEAVTIITPLKI----------INKKTLLKVGIKTGRT 188
+ FK T A ++S GQ A T+ L ++ TL++ +KTGRT
Sbjct: 193 KLPLFKYTGAQGEKMVRVSADGQSAHTVFRVLSRFSDGILHGVGLSHLTLVRATLKTGRT 252
Query: 189 HQIRVHLKHINHPIIGDTLYNN-------EPSLAKRLMLHAHKIAL 227
HQIRVHL+ PI GD Y + + KR+ LHA ++ L
Sbjct: 253 HQIRVHLQSQGCPIAGDERYGDYQANRRLQKLGLKRMFLHASELHL 298
>ref|NP_638435.1| (NC_003902) ribosomal large subunit pseudouridine synthase D
[Xanthomonas campestris pv. campestris str. ATCC 33913]
gb|AAM42359.1| (AE012424) ribosomal large subunit pseudouridine synthase D
[Xanthomonas campestris pv. campestris str. ATCC 33913]
Length = 331
Score = 80.1 bits (196), Expect = 2e-14
Identities = 63/226 (27%), Positives = 106/226 (46%), Gaps = 32/226 (14%)
Query: 17 KKAKALIDSGLV----SIGGKKLMVARKELPKNTHFSVQKVEKPSVIFEDENILALFKPP 72
K AL+D ++ G + + + L TH + Q + +V++ED+++L + KP
Sbjct: 48 KSGDALLDGETARPRDTLRGGETVQVQVVLETQTHAAPQDIPL-NVLYEDDHVLVIDKPA 106
Query: 73 FIESYDLASFFKGW------------------ALLHRLDKETSGVVLLVKENSEFHLKAK 114
+ + A G ++HRLDK+TSGV+++ + L+A+
Sbjct: 107 GLVVHPGAGNPDGTLVNALLFRDPNLAAVPRAGVVHRLDKDTSGVMVVART-----LQAQ 161
Query: 115 KAFKD----RAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKISKKGQEAVTIITPL 170
A + R V ++YLA+ G + +API + + G++AVT
Sbjct: 162 TALVEQLSARDVHRQYLAVVVGALVSGGTADAPIDRHPRDRLKMAVRDDGRDAVTHYRLR 221
Query: 171 KIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAK 216
+ T L+ ++TGRTHQIRVH+ H+ PI+GD LY L K
Sbjct: 222 ERFRAHTALECRLETGRTHQIRVHMAHLKSPIVGDPLYGGALKLPK 267
>ref|NP_251936.1| (NC_002516) pseudouridine synthase RluA [Pseudomonas aeruginosa]
pir||H83239 pseudouridine synthase RluA PA3246 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG06634.1|AE004747_7 (AE004747) pseudouridine synthase RluA [Pseudomonas aeruginosa]
Length = 211
Score = 80.1 bits (196), Expect = 2e-14
Identities = 50/144 (34%), Positives = 84/144 (57%), Gaps = 5/144 (3%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIE-EEREINAPILT 146
++HRLD ETSG+++L ++ ++ H + + F DR +K Y AL G+ E + I P+
Sbjct: 52 IVHRLDWETSGLMVLARD-ADSHRELSRQFHDRETEKAYTALCWGLPELDSGRIELPLRY 110
Query: 147 FKTTKAFSKIS-KKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGD 205
TK + + G+ A+T ++ + + +++ TGR+HQ+RVH+ I HP++GD
Sbjct: 111 DPPTKPRHVVDFEHGRHALTFWRVIERHERWSRVELTPITGRSHQLRVHMLSIGHPLLGD 170
Query: 206 TLYNNEPSLA--KRLMLHAHKIAL 227
LY N +LA +RL LHA + L
Sbjct: 171 RLYANPEALAAHERLCLHASLLCL 194
>ref|NP_389429.1| (NC_000964) alternate gene name: ylmL~similar to hypothetical
proteins [Bacillus subtilis]
pir||B69883 conserved hypothetical protein ylyB - Bacillus subtilis
emb|CAB13420.1| (Z99112) alternate gene name: ylmL~similar to hypothetical proteins
[Bacillus subtilis]
Length = 273
Score = 80.1 bits (196), Expect = 2e-14
Identities = 44/122 (36%), Positives = 73/122 (59%), Gaps = 2/122 (1%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIE-EEREINAPILT 146
++HR+DK+TSG+ L+V +N H ++ V ++Y A+ G+I ++ I+API
Sbjct: 133 IVHRIDKDTSGL-LMVAKNDMAHESLVNQLVNKTVTRKYTAVVHGLISHDDGTIDAPIGR 191
Query: 147 FKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDT 206
K + +++ G+ AVT L+ TL++ ++TGRTHQIRVH+K+I P+ GD
Sbjct: 192 DKKDRQSMTVTRDGKNAVTHFHVLEGFQDFTLVECQLETGRTHQIRVHMKYIGFPLAGDP 251
Query: 207 LY 208
Y
Sbjct: 252 KY 253
>sp|P44197|YQCB_HAEIN Hypothetical protein HI1435
Length = 239
Score = 80.1 bits (196), Expect = 2e-14
Identities = 53/161 (32%), Positives = 87/161 (53%), Gaps = 22/161 (13%)
Query: 89 LHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAP--ILT 146
+HRLD+ TSGV+L + +L ++ F+ + V+K YLA+ +G ++ + I+ P I
Sbjct: 50 IHRLDRPTSGVLLFALSSEIANLMCEQ-FEQKYVQKSYLAVVRGYLQGKERIDYPLKIQL 108
Query: 147 FKTTKAFSKISKKGQEAVTIITPLKIIN-----------KKTLLKVGIKTGRTHQIRVHL 195
K FS+ K+ QEA+T LKI+ + +L+K+ TGR H +R H+
Sbjct: 109 DKIADKFSQEDKEPQEAITDYEGLKIVEMPYPAGRYQTARYSLVKLIPHTGRKHXLRXHM 168
Query: 196 KHINHPIIGDT----LYNNEPSLA----KRLMLHAHKIALL 228
KH+ HPI GDT L+ N ++ RL LH+ ++ +
Sbjct: 169 KHVFHPIXGDTQYGDLHQNRALMSHLGCSRLFLHSDSLSFI 209
>ref|NP_224915.1| (NC_000922) predicted Pseudouridine Synthase [Chlamydophila
pneumoniae CWL029]
ref|NP_300775.1| (NC_002491) pseudouridine synthase [Chlamydophila pneumoniae J138]
ref|NP_444579.1| (NC_002179) ribosomal large subunit pseudouridine synthase D
[Chlamydophila pneumoniae AR39]
pir||G72043 ribosomal large chain pseudouridine synthase D CP0027 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
gb|AAD18858.1| (AE001653) predicted Pseudouridine Synthase [Chlamydophila
pneumoniae CWL029]
gb|AAF37922.1| (AE002166) ribosomal large subunit pseudouridine synthase D
[Chlamydophila pneumoniae AR39]
dbj|BAA98926.1| (AP002547) pseudouridine synthase [Chlamydophila pneumoniae J138]
Length = 325
Score = 79.3 bits (194), Expect = 3e-14
Identities = 51/147 (34%), Positives = 81/147 (54%), Gaps = 16/147 (10%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKD----RAVKKEYLALTQGIIEEEREINAP 143
++HRLDK+TSG+++ K +AKK F + + +KK YLA+ G I+
Sbjct: 138 IVHRLDKDTSGLIITAKTR-----QAKKVFSELFSTKRLKKSYLAVCIGK-PRSTTIHTH 191
Query: 144 ILTFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPII 203
I + + +S +G+EAVT L K + + + +TGRTHQ+RVH+KH+ PI+
Sbjct: 192 ISRHQNKRKEMTVSSQGKEAVTHCQVLAFNGKLSFVALSPETGRTHQLRVHMKHLGTPIL 251
Query: 204 GDTLY-----NNEPSLAKRLMLHAHKI 225
GD +Y N+ L K+ LHA+ +
Sbjct: 252 GDPVYGIPSMNSSYGLDKQ-QLHAYSV 277
>ref|NP_355395.1| (NC_003062) AGR_C_4432p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK88180.1| (AE008157) AGR_C_4432p [Agrobacterium tumefaciens str. C58
(Cereon)]
Length = 340
Score = 78.6 bits (192), Expect = 6e-14
Identities = 79/300 (26%), Positives = 135/300 (44%), Gaps = 68/300 (22%)
Query: 10 VQENISHKKAKALIDSGLVSIGGKKLMVARKELPKNTHFSVQKVEKPSVI---------- 59
V ++S + KALI+ G V + G+ + +K++ + E +
Sbjct: 33 VGSDLSRSRLKALIEQGAVLLNGQPVTEPKKKVHPGDRVEIVMPEPEDPVPQGEDIPLDV 92
Query: 60 -FEDENILALFKPPFIESYDLASFFKGW----------------------ALLHRLDKET 96
+EDE+++ L KP + + A + G ++HRLDKET
Sbjct: 93 EYEDEDLIVLVKPAGLVVHPGAGNWTGTLVNALIYHCGDSLSGIGGVKRPGIVHRLDKET 152
Query: 97 SGVVLLVK-ENSEFHLKAKKAFKDRA--VKKEYLALTQGIIEEEREINAPIL---TFKTT 150
SGV+++ K +N+ HL A+ A R +++ Y A+ G R L T +T
Sbjct: 153 SGVMVVAKNDNAHRHLAAQFADHGRTGPLERAYKAVVWGRPRTLRGTVDAALGRGTDRTK 212
Query: 151 KAF-SKISKKGQEAVTIITPLKIINKK-------TLLKVGIKTGRTHQIRVHLKHINHPI 202
+A ++ S +EA+T ++ ++K ++++ ++TGRTHQIRVH+ HI HP+
Sbjct: 213 RAVKNEDSFDAREAITHYEVMERFHEKPDASCLASMVECRLETGRTHQIRVHMAHIGHPL 272
Query: 203 IGDTLYN----------NEPSLA-----KRLMLHAHKIALLG------YEFEAIAPKEFE 241
IGD Y +EP+ + R LHA+ +A EFE P++ E
Sbjct: 273 IGDPEYGAAFRTKANLLDEPARSTVNRFPRQALHAYLLAFEHPRTGEVMEFETDMPEDME 332
>sp|Q45826|YMDA_CHLAU Hypothetical protein in MDH 5'region (ORFA)
emb|CAA61435.1| (X89038) ORFA [Chloroflexus aurantiacus]
Length = 253
Score = 78.6 bits (192), Expect = 6e-14
Identities = 56/167 (33%), Positives = 87/167 (51%), Gaps = 17/167 (10%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKD----RAVKKEYLALTQGIIEEEREINAP 143
++HRLD++TSG++++ + H +A ++ D R ++K Y AL G E I+AP
Sbjct: 80 IVHRLDRDTSGLLVIAR-----HDQAMRSLVDQQQARRMRKIYQALVIGRPPETGTIDAP 134
Query: 144 ILTFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPII 203
I + + G+ A T L +LL+V ++TGRTHQIRVHL+H+ +PI+
Sbjct: 135 IGRDPRDRLRMAVVPDGRPARTHYRLLDTFGDYSLLEVQLETGRTHQIRVHLRHLGYPIV 194
Query: 204 GDTLYNNEPS--LAKRLMLHAHKIALL------GYEFEAIAPKEFEI 242
GD +Y S R LHA + L+ EF A P + +I
Sbjct: 195 GDPVYGPRRSHLHLSRQFLHAAYLGLVHPRSGRWQEFTAPLPADLQI 241
>ref|NP_533115.1| (NC_003304) pseudouridine synthase homolog [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAL43431.1| (AE009191) pseudouridine synthase homolog [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 325
Score = 78.6 bits (192), Expect = 6e-14
Identities = 79/300 (26%), Positives = 135/300 (44%), Gaps = 68/300 (22%)
Query: 10 VQENISHKKAKALIDSGLVSIGGKKLMVARKELPKNTHFSVQKVEKPSVI---------- 59
V ++S + KALI+ G V + G+ + +K++ + E +
Sbjct: 18 VGSDLSRSRLKALIEQGAVLLNGQPVTEPKKKVHPGDRVEIVMPEPEDPVPQGEDIPLDV 77
Query: 60 -FEDENILALFKPPFIESYDLASFFKGW----------------------ALLHRLDKET 96
+EDE+++ L KP + + A + G ++HRLDKET
Sbjct: 78 EYEDEDLIVLVKPAGLVVHPGAGNWTGTLVNALIYHCGDSLSGIGGVKRPGIVHRLDKET 137
Query: 97 SGVVLLVK-ENSEFHLKAKKAFKDRA--VKKEYLALTQGIIEEEREINAPIL---TFKTT 150
SGV+++ K +N+ HL A+ A R +++ Y A+ G R L T +T
Sbjct: 138 SGVMVVAKNDNAHRHLAAQFADHGRTGPLERAYKAVVWGRPRTLRGTVDAALGRGTDRTK 197
Query: 151 KAF-SKISKKGQEAVTIITPLKIINKK-------TLLKVGIKTGRTHQIRVHLKHINHPI 202
+A ++ S +EA+T ++ ++K ++++ ++TGRTHQIRVH+ HI HP+
Sbjct: 198 RAVKNEDSFDAREAITHYEVMERFHEKPDASCLASMVECRLETGRTHQIRVHMAHIGHPL 257
Query: 203 IGDTLYN----------NEPSLA-----KRLMLHAHKIALLG------YEFEAIAPKEFE 241
IGD Y +EP+ + R LHA+ +A EFE P++ E
Sbjct: 258 IGDPEYGAAFRTKANLLDEPARSTVNRFPRQALHAYLLAFEHPRTGEVMEFETDMPEDME 317
>ref|NP_484566.1| (NC_003272) probable pseudouridine synthase [Nostoc sp. PCC 7120]
gb|AAG09315.1| (AF178757) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB72480.1| (AP003582) ORF_ID:alr0522~probable pseudouridine synthase [Nostoc
sp. PCC 7120]
Length = 312
Score = 78.2 bits (191), Expect = 7e-14
Identities = 65/255 (25%), Positives = 119/255 (46%), Gaps = 42/255 (16%)
Query: 13 NISHKKAKALIDSGLVSIGGK-------KLMVARK---ELPKNTHFSVQKVEKP-SVIFE 61
++S + + LI+ G V + GK L V + E+P+ +Q + P +++E
Sbjct: 26 DLSRSRIQQLIEQGKVQVNGKVCTSKKINLKVGDRITLEVPEAQPLEIQAEDIPLDILYE 85
Query: 62 DENILALFKPPFIESYDLASFFKGW---------------------ALLHRLDKETSGVV 100
D+ +L L KP + + G ++HRLDK+T+G +
Sbjct: 86 DDQLLILNKPAGLVVHPAPGHSHGTLVNALLAHCPDLPGIGGVQRPGIVHRLDKDTTGAI 145
Query: 101 LLVKENSEF-HLKAKKAFKDRAVKKEYLALTQGIIEEER-EINAPILTFKTTK---AFSK 155
+ K + + H++A+ + + ++EYL + G + +++ PI + A
Sbjct: 146 AIAKTDIAYKHIQAQ--LQAKTARREYLGVVYGAPKTASGKVDLPIGRHPQDRKKMAVVP 203
Query: 156 ISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLA 215
I + G+ A+T + + TL+ ++TGRTHQIRVH + HPI+GD +Y + S+
Sbjct: 204 IEEGGRSAITHWQIQERLGNFTLIHFQLETGRTHQIRVHSAKMGHPIVGDPVYGSGRSVG 263
Query: 216 KRL---MLHAHKIAL 227
L LHA ++ L
Sbjct: 264 VNLPGQALHAWRLRL 278
>ref|NP_243408.1| (NC_002570) BH2542~unknown conserved protein [Bacillus halodurans]
dbj|BAB06261.1| (AP001515) BH2542~unknown conserved protein [Bacillus halodurans]
Length = 305
Score = 77.8 bits (190), Expect = 1e-13
Identities = 50/147 (34%), Positives = 82/147 (55%), Gaps = 7/147 (4%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER-EINAPILT 146
++HR+DK+TSG++++ K N H K + ++ Y A+ G I + I+API
Sbjct: 134 IVHRIDKDTSGLLMIAK-NDRAHESLVNQLKAKTTERVYQAIVHGNIPHDHGTIDAPIGR 192
Query: 147 FKTTKAFSKISKKG-QEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGD 205
K + ++++ ++AVT T L+ T ++ ++TGRTHQIRVH K+I P+ GD
Sbjct: 193 DKVDRQSMTVTEENSRDAVTHFTVLERFGDFTFVECQLETGRTHQIRVHFKYIGFPLAGD 252
Query: 206 TLYNNEPSLA-KRLMLHAHKIALLGYE 231
Y + +L+ LHA K LG+E
Sbjct: 253 PKYGPKKTLSIDGQALHAQK---LGFE 276
>ref|NP_232505.1| (NC_002506) ribosomal large subunit pseudouridine synthase A
[Vibrio cholerae]
pir||C82498 ribosomal large chain pseudouridine synthase A VCA0104 [imported] -
Vibrio cholerae (group O1 strain N16961)
gb|AAF96018.1| (AE004353) ribosomal large subunit pseudouridine synthase A [Vibrio
cholerae]
Length = 221
Score = 77.8 bits (190), Expect = 1e-13
Identities = 59/189 (31%), Positives = 102/189 (53%), Gaps = 23/189 (12%)
Query: 57 SVIFEDENILALFKP------PFIESYD-----LASFF---KGWALLHRLDKETSGVVLL 102
+++++D+ I+ + KP P + +D L + F +G LHRLD TSG+++
Sbjct: 19 TIVYQDDAIVVVNKPAEFLSVPGVHVHDSVLTRLKAQFTQAEGVFALHRLDMSTSGLLVF 78
Query: 103 VKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER-EINAPILTFKTTKAFSKIS-KKG 160
+ + +K F RAV+K Y+AL +G + E + EI P+ + K+ ++G
Sbjct: 79 ALTRRA-NKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDLDDRPRQKVCWQQG 137
Query: 161 QEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKH---INHPIIGDTLYNNEPSLAKR 217
+ A+T +++ +T + + TGRTHQ+RVH H +N PI+GD LY + KR
Sbjct: 138 KPALTHWETVQVEQNRTRVYLYPHTGRTHQLRVHCAHHLGLNAPIVGDDLYGLQD---KR 194
Query: 218 LMLHAHKIA 226
L LHA +++
Sbjct: 195 LFLHAEQLS 203
>ref|NP_519749.1| (NC_003295) PROBABLE RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE
D PROTEIN [Ralstonia solanacearum]
emb|CAD15330.1| (AL646065) PROBABLE RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE
D PROTEIN [Ralstonia solanacearum]
Length = 358
Score = 77.8 bits (190), Expect = 1e-13
Identities = 69/263 (26%), Positives = 114/263 (43%), Gaps = 51/263 (19%)
Query: 15 SHKKAKALIDSGLVSIGGK------------KLMVARKELPKNTHFSVQKVEKPSVIFED 62
S + + ID+G V +GG ++ V + F + V+ V++ED
Sbjct: 64 SRSRLQQWIDAGAVRVGGAAVRPRAAVCGGDRIEVVPQRADDENAFVAEPVDL-DVVYED 122
Query: 63 ENILALFKPPFIESYDLASFFKGWAL------------------LHRLDKETSGVVLLVK 104
+ +L + KP + + A + G L +HRLDKETSG+ ++V
Sbjct: 123 DTLLVINKPAGLVVHPAAGNWSGTVLNGLLHRYPQAAGLPRAGIVHRLDKETSGL-MVVA 181
Query: 105 ENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKI--SKKGQE 162
+ + R VK+ YLAL G E I+API + I + G+
Sbjct: 182 RTLPAQTDLVRQLQARTVKRTYLALVWGETPEAGTIDAPIGRDPRDRTRMAIIETASGKP 241
Query: 163 AVTIITPLKIIN----KKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNE------- 211
A T L +++ + +L++ ++TGRTHQIRVH + HP++GD +Y
Sbjct: 242 ARTHFKTLDVVDLGRAQVSLVQCQLETGRTHQIRVHFESEGHPLLGDPVYTRNFRRGRPQ 301
Query: 212 ------PSLAKRLMLHAHKIALL 228
P+ R LHA ++ L+
Sbjct: 302 TIKAPLPAPFARQALHAVRLGLV 324
>ref|NP_251665.1| (NC_002516) ribosomal large subunit pseudouridine synthase C
[Pseudomonas aeruginosa]
pir||G83273 ribosomal large subunit pseudouridine synthase C PA2975 [imported]
- Pseudomonas aeruginosa (strain PAO1)
gb|AAG06363.1|AE004723_7 (AE004723) ribosomal large subunit pseudouridine synthase C
[Pseudomonas aeruginosa]
Length = 318
Score = 77.4 bits (189), Expect = 1e-13
Identities = 59/216 (27%), Positives = 106/216 (48%), Gaps = 25/216 (11%)
Query: 35 LMVARKELPKNTHFSVQKVEKPSVIFEDENILALFKPPFIESY--------------DLA 80
L +A ++ P + + + ++++ED+ ++ + KP I + L
Sbjct: 74 LRLAERDEPAPLAQGLLERMEAAIVYEDKALIVVNKPAGIAVHGGSGVSAGVIEVFRQLR 133
Query: 81 SFFKGWALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEE-ERE 139
K L+HRLD++TSG++++ K+ S + ++ V K Y AL +G ++
Sbjct: 134 PDAKDIELVHRLDRDTSGLLMIAKKRSMLRHLHEALRGEKIVDKRYHALVRGHWPAGKKN 193
Query: 140 INAPIL--TFKTTKAFSKISKKGQEAVTIITPLKIINK-KTLLKVGIKTGRTHQIRVHLK 196
+ AP+L ++ + +++ +G++A+T L+ TL++ TGRTHQIRVH K
Sbjct: 194 VRAPLLKNNLRSGERMVEVNVEGKDALTEFRVLRRFGDFATLVEARPITGRTHQIRVHAK 253
Query: 197 HINHPIIGDTLYNNEPSL-------AKRLMLHAHKI 225
H H I GD Y +E KRL LHA ++
Sbjct: 254 HAGHAIAGDPKYGDEDFSREIRELGGKRLFLHAAQL 289
>ref|NP_372374.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_374957.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
ref|NP_646608.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB42936.1| (AP003135) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB58012.1| (AP003363) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
dbj|BAB95656.1| (AP004828) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 273
Score = 77.0 bits (188), Expect = 2e-13
Identities = 50/139 (35%), Positives = 79/139 (55%), Gaps = 5/139 (3%)
Query: 89 LHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIE-EEREINAPILTF 147
+HRLD+ET G+ L+V +N + +D + + Y A + ++ + + I+ PI
Sbjct: 121 IHRLDQETVGL-LIVAKNPLMKKILDRMLEDNDITRIYKANVKALLPLKPQTIDMPIGKD 179
Query: 148 KTTKAFSKISKKGQEAVTIITPLKIINKKTL-LKVGIKTGRTHQIRVHLKHINHPIIGDT 206
K ++S GQ A+T I K+I + L++ + TGRTHQIRVHL I HP+IGD
Sbjct: 180 KFHSNKRRVSPTGQRAITHILTSKMIKEAVCQLEIKLDTGRTHQIRVHLAEIGHPVIGDP 239
Query: 207 LYNNEPSLAKRLMLHAHKI 225
LY + S ++L L ++KI
Sbjct: 240 LYGD--STLRQLELESYKI 256
>ref|NP_599568.1| (NC_003450) COG0564:Pseudouridylate synthases, 23S RNA-specific
[Corynebacterium glutamicum]
dbj|BAB97709.1| (AP005274) Pseudouridylate synthases, 23S RNA-specific
[Corynebacterium glutamicum ATCC 13032]
Length = 294
Score = 77.0 bits (188), Expect = 2e-13
Identities = 64/211 (30%), Positives = 99/211 (46%), Gaps = 26/211 (12%)
Query: 52 KVEKPSVIFEDENILALFKPPFIESYDLASFFKG--------------WALLHRLDKETS 97
K SV+FED +L + KP I + G L+HRLD++TS
Sbjct: 83 KAVADSVLFEDAELLVINKPAGIPVHGGTGHGGGVIEALRQKFPQERDLELVHRLDRDTS 142
Query: 98 GVVLLVKENSEFHLKAKKAFKDRA--VKKEYLALTQGIIEEE-REINAPILTFKTTKAFS 154
G++L+ K S + ++ +DR + + YL +G + R+I+ P+ +TT
Sbjct: 143 GLLLVSKTTSVLR-ELQEILRDREEEIFRGYLLKVEGAWPGDLRQIDVPLKRTETTVV-- 199
Query: 155 KISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSL 214
G A T +K + TL+K + TGR HQIRVH ++ HPI+GD Y +
Sbjct: 200 -PHSDGLRARTYFEVVKRLPGATLVKAQLATGRKHQIRVHAQYAGHPIVGDPRYGSRGGR 258
Query: 215 AKRLMLHAHKI-----ALLGYEFEAIAPKEF 240
A + LHA ++ A +F A PKE+
Sbjct: 259 AATMHLHAAELVAPRGAGKRQKFTAPLPKEW 289
>ref|NP_245416.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK02563.1| (AE006084) unknown [Pasteurella multocida]
Length = 243
Score = 76.6 bits (187), Expect = 2e-13
Identities = 52/158 (32%), Positives = 84/158 (52%), Gaps = 22/158 (13%)
Query: 89 LHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTF- 147
+HRLD+ TSGV+L + +L + F+++ V+K YLA+ +G + E I+ P+
Sbjct: 51 IHRLDRPTSGVLLFALSSEVANLLCLQ-FENKQVQKSYLAIVRGYLVGEGRIDYPLKVQL 109
Query: 148 -KTTKAFSKISKKGQEAVTIITPLKIIN-----------KKTLLKVGIKTGRTHQIRVHL 195
K F++ K QEAVT L + + +L+++ TGR HQ+R H+
Sbjct: 110 DKIADKFAQDDKAPQEAVTDYLGLAKVEMPYCVKKYPTTRYSLVRLIPHTGRKHQLRRHM 169
Query: 196 KHINHPIIGDTLYNN--------EPSLAKRLMLHAHKI 225
KH+ HPI+GDT Y + + +RLMLHA ++
Sbjct: 170 KHLFHPILGDTQYGDLHQNRALTTHTGVQRLMLHAERL 207
>ref|NP_240218.1| (NC_002528) ribosomal large subunit pseudouridine synthase D
[Buchnera sp. APS]
sp|P57481|RLUD_BUCAI Ribosomal large subunit pseudouridine synthase D (Pseudouridylate
synthase) (Uracil hydrolyase)
dbj|BAB13104.1| (AP001119) ribosomal large subunit pseudouridine synthase D
[Buchnera sp. APS]
Length = 312
Score = 76.6 bits (187), Expect = 2e-13
Identities = 57/221 (25%), Positives = 103/221 (45%), Gaps = 34/221 (15%)
Query: 10 VQENISHKKAKALIDSGLVSIG--GKKLMVARKELPKNTHFSVQKVEKPSVIFEDENILA 67
V E+I ++ K ++ ++I K L+V ++P+N + ++ED +IL
Sbjct: 47 VNESIVNQPDKKILGGETLTIHPFSKDLLV---DIPENIFLDI--------VYEDSDILI 95
Query: 68 LFKPP------------------FIESYDLASFFKGWALLHRLDKETSGVVLLVKENSEF 109
+ KP + Y + ++HRLDK+TSG++++ K +
Sbjct: 96 INKPAGLVVHPGSGNKSGTILNALLYHYKNSKDLPRAGIVHRLDKDTSGLMVIAKNIFSY 155
Query: 110 -HLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKISKKGQEAVTIIT 168
HL K++ + +EY + G + IN PI+ + + G+ +VT
Sbjct: 156 NHLLL--LLKEKKIIREYEGIVHGKMIAGGTINKPIMRHYNRRTCMMVHHLGKPSVTHYK 213
Query: 169 PLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYN 209
L T + + ++TGRTHQIRVH+ HI +P++GD Y+
Sbjct: 214 VLSRFKFHTHIAIRLETGRTHQIRVHMLHIKYPLVGDPCYS 254
>ref|NP_104781.1| (NC_002678) pseudouridine synthase [Mesorhizobium loti]
dbj|BAB50567.1| (AP003002) pseudouridine synthase [Mesorhizobium loti]
Length = 329
Score = 76.6 bits (187), Expect = 2e-13
Identities = 76/302 (25%), Positives = 127/302 (41%), Gaps = 70/302 (23%)
Query: 9 SVQENISHKKAKALIDSGLVSIGGKKLMVARKELPKNTHFSVQKVEKP-----------S 57
S+ ++S + + LI G VS+ GK ++++ S+ E
Sbjct: 20 SLGPDMSRSRVQMLIRQGAVSVDGKPADETKRKMSAGESVSIAMPEPEPAAPQGEAIALD 79
Query: 58 VIFEDENILALFKPPFIESYDLASFFKGW----------------------ALLHRLDKE 95
V++ED+ ++ + KP + + A + G ++HRLDKE
Sbjct: 80 VLYEDDALIVINKPAGLVVHPGAGNWTGTLVNALIHHCGDSLSGIGGVRRPGIVHRLDKE 139
Query: 96 TSGVVLLVKENSEFHLKAKKAFKDRA----VKKEYLALTQGIIEEER-EINAPILTFKTT 150
TSGV+++ K + H +AF D +++ YLAL GI + ++AP+
Sbjct: 140 TSGVMVVAKTDRA-HKALSEAFADHGRTGDLERAYLALVWGIPQRPTGTVDAPLGRAADR 198
Query: 151 KAFSKISKKGQEAVTIITPLKIINK----------KTLLKVGIKTGRTHQIRVHLKHINH 200
+ + + +A +T + + +L++ ++TGRTHQIRVH+ HI H
Sbjct: 199 VRRAVVPEGRDDARHAVTHFAVQERFGENQQEFATASLVECRLETGRTHQIRVHMAHIGH 258
Query: 201 PIIGDTLY--------NNEPSLAK-------RLMLHAHKIAL------LGYEFEAIAPKE 239
P+IGD Y N P K R LHA +A L FEA P++
Sbjct: 259 PVIGDPDYGQAFRTKANRLPEPLKSQVKAFSRQALHAWLLAFRHPDTHLTMRFEAPIPRD 318
Query: 240 FE 241
E
Sbjct: 319 ME 320
>ref|NP_662187.1| (NC_002932) ribosomal large subunit pseudouridine synthase D
[Chlorobium tepidum TLS]
gb|AAM72529.1| (AE012889) ribosomal large subunit pseudouridine synthase D
[Chlorobium tepidum TLS]
Length = 329
Score = 76.3 bits (186), Expect = 3e-13
Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 53/242 (21%)
Query: 12 ENISHKKAKALIDSGLVSIGGKKLMVARKELPKNTHFSVQKVEKP-----------SVIF 60
EN + K + I+ V + GK + + + H + + P S+++
Sbjct: 23 ENATRNKVQKAIEEQRVLVNGKPVK-SNYRIKSCDHIHITFLRPPAPELAPEDIPISILY 81
Query: 61 EDENILALFK-------PPF----------------IESYDLASFFKGWALLHRLDKETS 97
ED++++ + K P F ++ DL ++HRLDK+TS
Sbjct: 82 EDDDLMVIDKEAGMVVHPAFGNWTGTLANAILHHLGKDADDLDKTEMRPGIVHRLDKDTS 141
Query: 98 GVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKIS 157
G++++ K H K F R V+K Y A+ G+ N P T KT S +
Sbjct: 142 GLIIVAKNPVALH-KLATQFARRQVEKVYKAIVWGVP------NPPSGTIKTNIGRSHKN 194
Query: 158 KK-----------GQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDT 206
+K G+ A+T ++ + L+ + + TGRTHQIRVHL+H+ HPI+GD
Sbjct: 195 RKVMANFPFEGAEGKHAITDYLVVEDLAYFALMDMTLHTGRTHQIRVHLQHLGHPILGDQ 254
Query: 207 LY 208
Y
Sbjct: 255 TY 256
>ref|NP_371532.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_374129.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB42107.1| (AP003132) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB57170.1| (AP003361) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 284
Score = 76.3 bits (186), Expect = 3e-13
Identities = 45/122 (36%), Positives = 65/122 (52%), Gaps = 5/122 (4%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTF 147
++ RLD+ T+G+V+ K HL F +KK Y L G I A I
Sbjct: 125 IVTRLDRNTTGIVIFAKYGHIHHL-----FSKVNLKKIYTCLVYGKTHTSGIIEANIRRS 179
Query: 148 KTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTL 207
K + +++ G+ A T + +K +L KV + TGRTHQIRVH +HI HPI+GD+L
Sbjct: 180 KDSIITREVASDGKYAKTSYEVINQNDKYSLCKVHLHTGRTHQIRVHFQHIGHPIVGDSL 239
Query: 208 YN 209
Y+
Sbjct: 240 YD 241
>ref|XP_031554.2| (XM_031554) similar to CG6187 gene product [Homo sapiens]
dbj|BAB71059.1| (AK055971) unnamed protein product [Homo sapiens]
Length = 545
Score = 75.9 bits (185), Expect = 4e-13
Identities = 47/168 (27%), Positives = 82/168 (47%), Gaps = 16/168 (9%)
Query: 58 VIFEDENILALFKPPFIESYDLASFFKGWAL--------------LHRLDKETSGVVLLV 103
++ E+E+++ + KP I + F + LHRLD+ TSGV++
Sbjct: 225 LLAENEDVVVVDKPSSIPVHPCGRFRHNTVIFILGKEHQLKELHPLHRLDRLTSGVLMFA 284
Query: 104 KENSEFHLKAKKAFKDRAVKKEYLALTQGIIE-EEREINAPILTFKTTKAFSKISKKGQE 162
K + + + +DR ++KEY+ +G EE PIL ++ +G+
Sbjct: 285 K-TAAVSERIHEQVRDRQLEKEYVCRVEGEFPTEEVTCKEPILVVSYKVGVCRVDPRGKP 343
Query: 163 AVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNN 210
T+ L + ++++ TGRTHQIRVHL+ + HPI+ D +YN+
Sbjct: 344 CETVFQRLSYNGQSSVVRCRPLTGRTHQIRVHLQFLGHPILNDPIYNS 391
>ref|NP_645706.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB94754.1| (AP004825) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 284
Score = 75.9 bits (185), Expect = 4e-13
Identities = 45/122 (36%), Positives = 65/122 (52%), Gaps = 5/122 (4%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTF 147
++ RLD+ T+G+V+ K HL F +KK Y L G I A I
Sbjct: 125 IVTRLDRNTTGIVIFAKYGYIHHL-----FSKVNLKKIYTCLVYGKTHTSGIIEANIRRS 179
Query: 148 KTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTL 207
K + +++ G+ A T + +K +L KV + TGRTHQIRVH +HI HPI+GD+L
Sbjct: 180 KDSIITREVASDGKYAKTSYEVINQNDKYSLCKVHLHTGRTHQIRVHFQHIGHPIVGDSL 239
Query: 208 YN 209
Y+
Sbjct: 240 YD 241
>ref|NP_455681.1| (NC_003198) ribosomal large subunit pseudouridine synthase C (EC
4.2.1.70) [Salmonella enterica subsp. enterica serovar
Typhi]
emb|CAD08312.1| (AL627269) ribosomal large subunit pseudouridine synthase C (EC
4.2.1.70) [Salmonella enterica subsp. enterica serovar
Typhi]
Length = 319
Score = 75.9 bits (185), Expect = 4e-13
Identities = 58/210 (27%), Positives = 101/210 (47%), Gaps = 27/210 (12%)
Query: 39 RKELPKNTHFSVQKVEKPSVIFEDENILALFKPPFIESYDLASFFKG------------- 85
R+E + H +++ED++IL L KP + + G
Sbjct: 76 REEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEAR 135
Query: 86 -WALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEE-REINAP 143
L+HRLD++TSGV+L+ K+ S + +++ ++K+YLAL +G + + + AP
Sbjct: 136 FLELVHRLDRDTSGVLLVAKKRSALR-SLHEQLREKGMQKDYLALVRGQWQSHVKTVQAP 194
Query: 144 ILT--FKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHP 201
+L ++ + ++S++G+ + T + TL++ TGRTHQIRVH ++ HP
Sbjct: 195 LLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHP 254
Query: 202 IIGDTLYNNEP---------SLAKRLMLHA 222
I D Y + + KRL LHA
Sbjct: 255 IAFDDRYGDREFDQQLTEAGTGLKRLFLHA 284
>gb|AAH07697.1|AAH07697 (BC007697) Unknown (protein for IMAGE:3953315) [Homo sapiens]
Length = 554
Score = 75.9 bits (185), Expect = 4e-13
Identities = 47/168 (27%), Positives = 82/168 (47%), Gaps = 16/168 (9%)
Query: 58 VIFEDENILALFKPPFIESYDLASFFKGWAL--------------LHRLDKETSGVVLLV 103
++ E+E+++ + KP I + F + LHRLD+ TSGV++
Sbjct: 234 LLAENEDVVVVDKPSSIPVHPCGRFRHNTVIFILGKEHQLKELHPLHRLDRLTSGVLMFA 293
Query: 104 KENSEFHLKAKKAFKDRAVKKEYLALTQGIIE-EEREINAPILTFKTTKAFSKISKKGQE 162
K + + + +DR ++KEY+ +G EE PIL ++ +G+
Sbjct: 294 K-TAAVSERIHEQVRDRQLEKEYVCRVEGEFPTEEVTCKEPILVVSYKVGVCRVDPRGKP 352
Query: 163 AVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNN 210
T+ L + ++++ TGRTHQIRVHL+ + HPI+ D +YN+
Sbjct: 353 CETVFQRLSYNGQSSVVRCRPLTGRTHQIRVHLQFLGHPILNDPIYNS 400
>ref|NP_460157.1| (NC_003197) 23S rRNA pseudouridylate synthase [Salmonella
typhimurium LT2]
gb|AAL20116.1| (AE008751) 23S rRNA pseudouridylate synthase [Salmonella
typhimurium LT2]
Length = 319
Score = 75.9 bits (185), Expect = 4e-13
Identities = 58/210 (27%), Positives = 101/210 (47%), Gaps = 27/210 (12%)
Query: 39 RKELPKNTHFSVQKVEKPSVIFEDENILALFKPPFIESYDLASFFKG------------- 85
R+E + H +++ED++IL L KP + + G
Sbjct: 76 REEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEAR 135
Query: 86 -WALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEE-REINAP 143
L+HRLD++TSGV+L+ K+ S + +++ ++K+YLAL +G + + + AP
Sbjct: 136 FLELVHRLDRDTSGVLLVAKKRSALR-SLHEQLREKGMQKDYLALVRGQWQSHVKTVQAP 194
Query: 144 ILT--FKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHP 201
+L ++ + ++S++G+ + T + TL++ TGRTHQIRVH ++ HP
Sbjct: 195 LLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHP 254
Query: 202 IIGDTLYNNEP---------SLAKRLMLHA 222
I D Y + + KRL LHA
Sbjct: 255 IAFDDRYGDREFDQQLTEAGTGLKRLFLHA 284
>ref|NP_405172.1| (NC_003143) ribosomal large subunit pseudouridine synthase C
[Yersinia pestis]
emb|CAC90413.1| (AJ414149) ribosomal large subunit pseudouridine synthase C
[Yersinia pestis]
Length = 320
Score = 75.5 bits (184), Expect = 5e-13
Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 18/168 (10%)
Query: 58 VIFEDENILALFKPPFIESYDLASFFKG--------------WALLHRLDKETSGVVLLV 103
++FED+ +L L KP + + G L+HRLD++TSGV+L+
Sbjct: 95 ILFEDDYLLVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVA 154
Query: 104 KENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEE-REINAPILT--FKTTKAFSKISKKG 160
K+ S + + ++++K+YLAL +G + + I AP+L ++ + K+S +G
Sbjct: 155 KKRSALR-SLHEQLRLKSMQKDYLALVRGQWQSHCKAIQAPLLKNIMQSGERVVKVSSEG 213
Query: 161 QEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLY 208
+ + T + TL+K TGRTHQIRVH H HPI D Y
Sbjct: 214 KPSETRFKIEERFEHATLVKASPVTGRTHQIRVHALHAGHPIAFDDRY 261
>ref|XP_130420.1| (XM_130420) similar to CG6187 gene product [Mus musculus]
Length = 519
Score = 75.5 bits (184), Expect = 5e-13
Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Query: 89 LHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREI-NAPILTF 147
LHRLD+ TSGV++ K + K + +DR ++KEY+ G ++ I PIL
Sbjct: 249 LHRLDRLTSGVLMFAK-TAAVSEKIHEQVRDRQLEKEYVCRVAGEFPDKEVICKEPILVV 307
Query: 148 KTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTL 207
++ +G+ T+ L + ++++ TGRTHQIRVHL+ + HPI+ D +
Sbjct: 308 SYKVGVCRVDPRGKPCETVFQRLSYNGRSSVVQCRPLTGRTHQIRVHLQFLGHPILNDPI 367
Query: 208 YNN 210
YN+
Sbjct: 368 YNS 370
>ref|NP_354476.1| (NC_003062) AGR_C_2714p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK87261.1| (AE008072) AGR_C_2714p [Agrobacterium tumefaciens str. C58
(Cereon)]
Length = 314
Score = 75.1 bits (183), Expect = 6e-13
Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 30/197 (15%)
Query: 58 VIFEDENILALFKPPFIE-------SYDLASFFKGWA--------LLHRLDKETSGVVLL 102
++ ED+ +L KP I + + + W L+HRLD++TSGV+++
Sbjct: 81 LLHEDDKVLVFNKPAGIAVQGGSGVNRHIDGLLEAWTSPKGEKPRLVHRLDRDTSGVLVV 140
Query: 103 VKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSK--ISKKG 160
+ K AF++R KK Y AL +G+ + ++ + L + T + I+K G
Sbjct: 141 ARTRGAAQ-KLTAAFRERDTKKTYWALVRGVPRKHQDKISTWLVKEQTPDGDRMRIAKHG 199
Query: 161 QEAVT-IITPLKIINKKTL----LKVGIKTGRTHQIRVHLKHINHPIIGD-TLYNNEPS- 213
+E I+ ++I+ L++ TGRTHQ+RVH H+ HPIIGD Y ++P+
Sbjct: 200 EEGADHAISYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALHMGHPIIGDPKYYIDDPNW 259
Query: 214 -----LAKRLMLHAHKI 225
+ KRL LHA I
Sbjct: 260 DFPGGVQKRLHLHARHI 276
>gb|AAD12509.1| (U02214) Homology to M62747 [Mycoplasma genitalium]
Length = 119
Score = 75.1 bits (183), Expect = 6e-13
Identities = 45/119 (37%), Positives = 67/119 (55%), Gaps = 6/119 (5%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEE-EREINAPILT 146
L+HRLD++TSG +++ K + L + ++R +K+ Y+AL INAP+
Sbjct: 2 LVHRLDRDTSGAIVVCKNQASL-LNLQNQLQNRTLKRYYVALVHFPFNALTGSINAPLAR 60
Query: 147 FKTTKAFSKISKKGQEAVTIITPLKIIN---KKTLLKVGIKTGRTHQIRVHLKHINHPI 202
K KI++ + A IT K+IN K L+ + + TGRTHQIRVHLK I HP+
Sbjct: 61 VNNNKVMFKIAQTAK-AKQAITKFKVINQNEKAALISLELLTGRTHQIRVHLKFIQHPV 118
>ref|NP_532161.1| (NC_003304) ribosomal large subunit pseudouridine synthase C
[Agrobacterium tumefaciens str. C58 (U. Washington)]
gb|AAL42477.1| (AE009107) ribosomal large subunit pseudouridine synthase C
[Agrobacterium tumefaciens str. C58 (U. Washington)]
Length = 329
Score = 75.1 bits (183), Expect = 6e-13
Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 30/197 (15%)
Query: 58 VIFEDENILALFKPPFIE-------SYDLASFFKGWA--------LLHRLDKETSGVVLL 102
++ ED+ +L KP I + + + W L+HRLD++TSGV+++
Sbjct: 96 LLHEDDKVLVFNKPAGIAVQGGSGVNRHIDGLLEAWTSPKGEKPRLVHRLDRDTSGVLVV 155
Query: 103 VKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSK--ISKKG 160
+ K AF++R KK Y AL +G+ + ++ + L + T + I+K G
Sbjct: 156 ARTRGAAQ-KLTAAFRERDTKKTYWALVRGVPRKHQDKISTWLVKEQTPDGDRMRIAKHG 214
Query: 161 QEAVT-IITPLKIINKKTL----LKVGIKTGRTHQIRVHLKHINHPIIGD-TLYNNEPS- 213
+E I+ ++I+ L++ TGRTHQ+RVH H+ HPIIGD Y ++P+
Sbjct: 215 EEGADHAISYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALHMGHPIIGDPKYYIDDPNW 274
Query: 214 -----LAKRLMLHAHKI 225
+ KRL LHA I
Sbjct: 275 DFPGGVQKRLHLHARHI 291
>ref|NP_438775.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P44782|RLUA_HAEIN Ribosomal large subunit pseudouridine synthase A (Pseudouridylate
synthase) (Uracil hydrolyase)
pir||E64155 yabO protein homolog HI0617 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC22276.1| (U32744) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 219
Score = 74.7 bits (182), Expect = 8e-13
Identities = 45/143 (31%), Positives = 81/143 (56%), Gaps = 6/143 (4%)
Query: 90 HRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER-EINAPILTFK 148
HRLD TSG+++ + + K+ F++R KK Y A+ G +E + E+N P++
Sbjct: 61 HRLDMATSGIIVFALSKAADR-ELKRQFREREPKKHYQAIVWGHLENDYGEVNLPMICDW 119
Query: 149 TTKAFSKIS-KKGQEAVTIITPL-KIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDT 206
+ ++ G+ AVT L ++ N T +K+ TGR+HQ+R+H+ + HPI+GD
Sbjct: 120 ENRPRQRLDFVLGKRAVTKFEVLARLPNNSTRVKLTPVTGRSHQLRLHMLALGHPILGDK 179
Query: 207 LYNNEPS--LAKRLMLHAHKIAL 227
Y++ + ++ RL LHA ++ +
Sbjct: 180 FYSHPQAKVMSPRLCLHAEELTI 202
>ref|NP_287220.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_309491.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG55832.1|AE005319_1 (AE005319) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB34887.1| (AP002555) hypothetical protein [Escherichia coli O157:H7]
Length = 319
Score = 74.3 bits (181), Expect = 1e-12
Identities = 52/189 (27%), Positives = 94/189 (49%), Gaps = 18/189 (9%)
Query: 39 RKELPKNTHFSVQKVEKPSVIFEDENILALFKPPFIESYDLASFFKG------------- 85
R+E + H +++ED++IL L KP + + G
Sbjct: 76 REEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEAR 135
Query: 86 -WALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEE-REINAP 143
L+HRLD++TSGV+L+ K+ S + +++ ++K+YLAL +G + + + AP
Sbjct: 136 FLELVHRLDRDTSGVLLVAKKRSALR-SLHEQLREKGMQKDYLALVRGQWQSHVKSVQAP 194
Query: 144 ILT--FKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHP 201
+L ++ + ++S++G+ + T + TL++ TGRTHQIRVH ++ HP
Sbjct: 195 LLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHP 254
Query: 202 IIGDTLYNN 210
I D Y +
Sbjct: 255 IAFDDRYGD 263
>ref|NP_415604.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P23851|RLUC_ECOLI Ribosomal large subunit pseudouridine synthase C (Pseudouridylate
synthase) (Uracil hydrolyase)
pir||C64852 probable pseudouridylate synthase yceC - Escherichia coli
gb|AAC74170.1| (AE000209) orf, hypothetical protein [Escherichia coli K12]
dbj|BAA35894.1| (D90744) Hypothetical 36.0 kd protein in rne-rpmF intergenic region
(orfx). [Escherichia coli]
Length = 319
Score = 74.3 bits (181), Expect = 1e-12
Identities = 52/189 (27%), Positives = 94/189 (49%), Gaps = 18/189 (9%)
Query: 39 RKELPKNTHFSVQKVEKPSVIFEDENILALFKPPFIESYDLASFFKG------------- 85
R+E + H +++ED++IL L KP + + G
Sbjct: 76 REEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEAR 135
Query: 86 -WALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEE-REINAP 143
L+HRLD++TSGV+L+ K+ S + +++ ++K+YLAL +G + + + AP
Sbjct: 136 FLELVHRLDRDTSGVLLVAKKRSALR-SLHEQLREKGMQKDYLALVRGQWQSHVKSVQAP 194
Query: 144 ILT--FKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHP 201
+L ++ + ++S++G+ + T + TL++ TGRTHQIRVH ++ HP
Sbjct: 195 LLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHP 254
Query: 202 IIGDTLYNN 210
I D Y +
Sbjct: 255 IAFDDRYGD 263
>ref|NP_603923.1| (NC_003454) tRNA pseudouridine synthase A [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gb|AAL95222.1| (AE010610) tRNA pseudouridine synthase A [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 289
Score = 74.3 bits (181), Expect = 1e-12
Identities = 62/204 (30%), Positives = 95/204 (46%), Gaps = 17/204 (8%)
Query: 55 KPSVIFEDENILALFKP-------------PFIESYDLASFFKGWALLHRLDKETSGVVL 101
K ++FE+EN+ + K +E + ++R+DK TSG+++
Sbjct: 87 KEMIVFENENLFVINKLLGDVVHKGSGHDISLLEEFRSYYSNNNINFVNRIDKLTSGLII 146
Query: 102 LVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAF-SKISKKG 160
K AK+ D +K+ Y+ L G IE++ I L K S I K+G
Sbjct: 147 GAKNIKTAREVAKEIQADNIIKRYYI-LVNGKIEKDNFILENYLKKDEEKVIVSDIEKEG 205
Query: 161 -QEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLY-NNEPSLAKRL 218
++++T +K NK TLL+ +KTGRTHQ+R L HI + I+GDT Y +E L
Sbjct: 206 YKKSITYFKKIKEHNKYTLLEAELKTGRTHQLRAQLNHIGNNIVGDTKYGKDEREDMMYL 265
Query: 219 MLHAHKIALLGYEFEAIAPKEFEI 242
+ KI L E + P F I
Sbjct: 266 FSYYLKIDLYNLEIKLEIPNFFLI 289
>pir||B23747 ORFX protein, 5' of ams - Escherichia coli (fragment)
gb|AAA23442.1| (M62747) orfX [Escherichia coli]
Length = 285
Score = 74.3 bits (181), Expect = 1e-12
Identities = 52/189 (27%), Positives = 94/189 (49%), Gaps = 18/189 (9%)
Query: 39 RKELPKNTHFSVQKVEKPSVIFEDENILALFKPPFIESYDLASFFKG------------- 85
R+E + H +++ED++IL L KP + + G
Sbjct: 76 REEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEAR 135
Query: 86 -WALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEE-REINAP 143
L+HRLD++TSGV+L+ K+ S + +++ ++K+YLAL +G + + + AP
Sbjct: 136 FLELVHRLDRDTSGVLLVAKKRSALR-SLHEQLREKGMQKDYLALVRGQWQSHVKSVQAP 194
Query: 144 ILT--FKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHP 201
+L ++ + ++S++G+ + T + TL++ TGRTHQIRVH ++ HP
Sbjct: 195 LLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHP 254
Query: 202 IIGDTLYNN 210
I D Y +
Sbjct: 255 IAFDDRYGD 263
>ref|NP_438574.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P44433|RLUC_HAEIN Ribosomal large subunit pseudouridine synthase C (Pseudouridylate
synthase) (Uracil hydrolyase)
pir||G64151 hypothetical protein HI0412 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC22071.1| (U32724) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 322
Score = 73.9 bits (180), Expect = 1e-12
Identities = 59/193 (30%), Positives = 95/193 (48%), Gaps = 27/193 (13%)
Query: 58 VIFEDENILALFKPPFIESYDLASFFKG--------------WALLHRLDKETSGVVLLV 103
++FED+ ++ L KP I + + G L+HRLD++TSG++L+
Sbjct: 100 ILFEDDCLIILNKPSGIAVHGGSGLNFGVIEALRALRPEARFLELVHRLDRDTSGILLIA 159
Query: 104 KENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEE-REINAPILT--FKTTKAFSKISKKG 160
K+ S + + + V+K+YLAL +G + + I A +L + + ++S++G
Sbjct: 160 KKRSALR-NLHEQLRVKTVQKDYLALVRGQWQSHIKVIQASLLKNELSSGERIVRVSEQG 218
Query: 161 QEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYN--------NEP 212
+ + T + + TL+K TGRTHQIRVH ++ HPI D Y NE
Sbjct: 219 KPSETRFSIEERYINATLVKASPVTGRTHQIRVHTQYAGHPIALDDKYGDKDFDKQMNEL 278
Query: 213 SLAKRLMLHAHKI 225
L RL LHA I
Sbjct: 279 GL-NRLFLHAFSI 290
>ref|NP_289346.1| (NC_002655) Z4107 gene product [Escherichia coli O157:H7 EDL933]
ref|NP_311678.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG57905.1|AE005507_6 (AE005507) Z4107 gene product [Escherichia coli O157:H7 EDL933]
dbj|BAB37074.1| (AP002563) hypothetical protein [Escherichia coli O157:H7]
Length = 260
Score = 73.9 bits (180), Expect = 1e-12
Identities = 52/159 (32%), Positives = 83/159 (51%), Gaps = 22/159 (13%)
Query: 90 HRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTF-- 147
HRLD+ TSGV+L+ + L A++ F+ ++K Y A+ +G + EE ++ P++
Sbjct: 51 HRLDRPTSGVLLMGLSSEAGRLLAQQ-FEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELD 109
Query: 148 KTTKAFSKISKKGQEAVTIITPLKIINKKT-----------LLKVGIKTGRTHQIRVHLK 196
K F++ K Q AVT L + L+++ KTGR HQ+R HL
Sbjct: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169
Query: 197 HINHPIIGDTLYNN--------EPSLAKRLMLHAHKIAL 227
H+ HPIIGD+ + + E +RLMLHA +++L
Sbjct: 170 HLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSL 208
>ref|NP_461885.1| (NC_003197) putative synthase [Salmonella typhimurium LT2]
gb|AAL21844.1| (AE008835) putative synthase [Salmonella typhimurium LT2]
Length = 260
Score = 73.9 bits (180), Expect = 1e-12
Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 22/159 (13%)
Query: 90 HRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTF-- 147
HRLD+ TSGV LL+ +SE + + F+ ++K Y A+ +G + ++ ++ P++
Sbjct: 51 HRLDRPTSGV-LLMGLSSEAGRRLAQQFEQHHIRKRYHAIVRGWLMDDAVLDYPLVEERD 109
Query: 148 KTTKAFSKISKKGQEAVTIITPLKIINKKT-----------LLKVGIKTGRTHQIRVHLK 196
K F++ K Q AVT L + L+++ KTGR HQ+R HL
Sbjct: 110 KIADKFAREDKAPQPAVTQYRGLATVEMAVPTGRYPTTRYGLVELEPKTGRKHQLRRHLA 169
Query: 197 HINHPIIGDTLYNN--------EPSLAKRLMLHAHKIAL 227
H+ HPIIGD+ + + E +RLMLHA ++ L
Sbjct: 170 HLRHPIIGDSKHGDLRQNRSAAEHFACRRLMLHASRLEL 208
>ref|NP_417271.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|Q46918|YQCB_ECOLI Hypothetical protein yqcB
pir||C65061 hypothetical protein b2791 - Escherichia coli (strain K-12)
gb|AAB40441.1| (U29581) corresponds to hypothetical protein from E. carotovora PIR
Accession Number S45108; 2 ORFs in E. coli; ORF_f260
[Escherichia coli]
gb|AAC75833.1| (AE000363) orf, hypothetical protein [Escherichia coli K12]
Length = 260
Score = 73.9 bits (180), Expect = 1e-12
Identities = 52/159 (32%), Positives = 83/159 (51%), Gaps = 22/159 (13%)
Query: 90 HRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTF-- 147
HRLD+ TSGV+L+ + L A++ F+ ++K Y A+ +G + EE ++ P++
Sbjct: 51 HRLDRPTSGVLLMGLSSEAGRLLAQQ-FEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELD 109
Query: 148 KTTKAFSKISKKGQEAVTIITPLKIINKKT-----------LLKVGIKTGRTHQIRVHLK 196
K F++ K Q AVT L + L+++ KTGR HQ+R HL
Sbjct: 110 KIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLA 169
Query: 197 HINHPIIGDTLYNN--------EPSLAKRLMLHAHKIAL 227
H+ HPIIGD+ + + E +RLMLHA +++L
Sbjct: 170 HLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSL 208
>ref|NP_420787.1| (NC_002696) ribosomal large subunit pseudouridine synthase C
[Caulobacter crescentus CB15]
gb|AAK23955.1| (AE005871) ribosomal large subunit pseudouridine synthase C
[Caulobacter crescentus CB15]
Length = 331
Score = 73.6 bits (179), Expect = 2e-12
Identities = 63/206 (30%), Positives = 92/206 (44%), Gaps = 42/206 (20%)
Query: 55 KPSVIFEDENILALFKPPFIE-------SYDLASFFKGWA-------LLHRLDKETSGVV 100
K V++EDE +LAL KP + + + W L+HRLD++TSGV+
Sbjct: 90 KSLVLYEDEEVLALNKPAGLAVQGGTKTTKHIDKLLSAWGEGVDRPRLVHRLDRDTSGVL 149
Query: 101 LLVKENSEFHLKAKKAFKDRAVKKEYLAL-------TQGIIE--------EEREINAPIL 145
LL K S + AF R +K Y A+ T+G++E +RE+ P
Sbjct: 150 LLGKTPSAA-ARLSGAFAKRKAQKTYWAIVAGNPHPTEGVMELHLAKRGVGDRELVVP-- 206
Query: 146 TFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGD 205
A K +T + + T + + TGRTHQ+R H+K + HPI+GD
Sbjct: 207 ------AQPKDPDAQPAETEFVTISRAGPRVTWMALRPHTGRTHQLRAHMKAMGHPILGD 260
Query: 206 TLYNNEPSL----AKRLMLHAHKIAL 227
Y +E S +L LHA I L
Sbjct: 261 PKYGDEKSAPLSEGLKLQLHARSILL 286
>ref|NP_457360.1| (NC_003198) putative RNA pseudouridylate synthase [Salmonella
enterica subsp. enterica serovar Typhi]
emb|CAD06078.1| (AL627276) putative RNA pseudouridylate synthase [Salmonella
enterica subsp. enterica serovar Typhi]
Length = 260
Score = 73.6 bits (179), Expect = 2e-12
Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 22/159 (13%)
Query: 90 HRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTF-- 147
HRLD+ TSGV LL+ +SE + + F+ ++K Y A+ +G + ++ ++ P++
Sbjct: 51 HRLDRPTSGV-LLMGLSSEAGRRLAQQFEQHHIRKRYHAIVRGWLIDDAVLDYPLVEERD 109
Query: 148 KTTKAFSKISKKGQEAVTIITPLKIINKKT-----------LLKVGIKTGRTHQIRVHLK 196
K F++ K Q AVT L + L+++ KTGR HQ+R HL
Sbjct: 110 KIADKFAREDKAPQPAVTQYRGLATVEMAVPTGRYPTTRYGLVELEPKTGRKHQLRRHLA 169
Query: 197 HINHPIIGDTLYNN--------EPSLAKRLMLHAHKIAL 227
H+ HPIIGD+ + + E +RLMLHA ++ L
Sbjct: 170 HLRHPIIGDSKHGDLRQNRSAAEHFACRRLMLHASRLEL 208
>gb|AAF52959.1| (AE003628) CG7475 gene product [Drosophila melanogaster]
Length = 506
Score = 73.6 bits (179), Expect = 2e-12
Identities = 47/169 (27%), Positives = 82/169 (47%), Gaps = 16/169 (9%)
Query: 58 VIFEDENILALFKPPFIESYDLASF--------------FKGWALLHRLDKETSGVVLLV 103
++ DE+I+ + KP I + + K +HRLD+ TSG++L
Sbjct: 151 IVHMDEDIVVVNKPASIPVHPCGRYRHNTVVFILAKEFNLKNLRTIHRLDRLTSGLLLFG 210
Query: 104 KENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER-EINAPILTFKTTKAFSKISKKGQE 162
+ + + ++ ++R V+KEY+ +G+ + E PI K+S KG++
Sbjct: 211 RSPKKAR-QMEQQIRNRQVEKEYICRVEGVFPDGIVECKEPIEVVSYKIGVCKVSAKGKD 269
Query: 163 AVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNE 211
T L +++ TGR HQIRVHL+++ +PI+ D LYN+E
Sbjct: 270 CTTTFQKLSQNGTTSVVLCKPLTGRMHQIRVHLQYLGYPILNDPLYNHE 318
>ref|NP_386831.1| (NC_003047) PUTATIVE RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE
PROTEIN [Sinorhizobium meliloti]
emb|CAC47304.1| (AL591791) PUTATIVE RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE
PROTEIN [Sinorhizobium meliloti]
Length = 343
Score = 73.2 bits (178), Expect = 2e-12
Identities = 64/242 (26%), Positives = 112/242 (45%), Gaps = 49/242 (20%)
Query: 15 SHKKAKALIDSGLVSIGGKKLMVARKELPKNTHFSVQKVEKPS-----------VIFEDE 63
S + K+LI+ G VSI G + ++++ F + E V++ED
Sbjct: 38 SRNRIKSLIEQGAVSINGATVTEPKRKVHPGDSFRIALPEPEDPEPKGEAIPLDVLYEDA 97
Query: 64 NILALFKPPFIESYDLASFFKGW----------------------ALLHRLDKETSGVVL 101
+++ L KP + + A + G ++HRLDK+TSGV++
Sbjct: 98 DLIVLVKPAGLVVHPGAGNWTGTLVNALIHHCGDSLSGIGGVKRPGIVHRLDKDTSGVMV 157
Query: 102 LVKENSEFHLKAKKAFKDRA----VKKEYLALTQGIIEEER-EINAPI--LTFKTTKAFS 154
+ K N H F D +++ Y A+ G + + +I+AP+ +T +A
Sbjct: 158 VAK-NDAAHRHLSDQFADHGRNGPLERAYRAVVWGRPRQLKGKIDAPLGRAGDRTKRAVK 216
Query: 155 KI-SKKGQEAVTIITPLKIINKK-------TLLKVGIKTGRTHQIRVHLKHINHPIIGDT 206
+ S +EA+T ++ ++K + ++ ++TGRTHQIRVH+ HI HP+IGD
Sbjct: 217 REDSDDAREAITHYEVVERYHEKPDGTSLASTVECHLETGRTHQIRVHMAHIGHPLIGDP 276
Query: 207 LY 208
Y
Sbjct: 277 DY 278
>ref|NP_404140.1| (NC_003143) ribosomal large subunit pseudouridine synthase A
[Yersinia pestis]
emb|CAC89354.1| (AJ414143) ribosomal large subunit pseudouridine synthase A
[Yersinia pestis]
Length = 206
Score = 72.8 bits (177), Expect = 3e-12
Identities = 53/195 (27%), Positives = 101/195 (51%), Gaps = 23/195 (11%)
Query: 58 VIFEDENILALFKPPFIESYD-------------LASFFKGWALLHRLDKETSGVVLLVK 104
V+++D++I+ + KP + S + + F +HRLD TSGV+++
Sbjct: 3 VLYQDKHIMVVNKPSGLLSVPGRAPENKDSVMTRVQNDFPTAESVHRLDMATSGVIVVAL 62
Query: 105 ENSEFHLKAKKAFKDRAVKKEYLALTQG-IIEEEREINAPILTFKTTKAFSKISKKGQEA 163
+ + K+ F++R KK Y+A G + ++E I+ P++ + K+ + ++
Sbjct: 63 TKAA-ERELKRQFREREPKKTYIARVWGHLAQDEGLIDLPLICDWPNRPKQKVCYETGKS 121
Query: 164 VTIITPLKIINK----KTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNN--EPSLAKR 217
T ++I++ T +K+ TGR+HQ+RVH+ + HPI+GD Y + ++A R
Sbjct: 122 AQ--TEYQVISRDDDGSTRVKLSPITGRSHQLRVHMLAMGHPILGDGFYAHPEAKAMASR 179
Query: 218 LMLHAHKIALLGYEF 232
L LHA ++ + EF
Sbjct: 180 LQLHAQQLCITHPEF 194
>ref|NP_299883.1| (NC_002488) pseudouridylate synthase [Xylella fastidiosa 9a5c]
pir||A82538 pseudouridylate synthase XF2606 [imported] - Xylella fastidiosa
(strain 9a5c)
gb|AAF85403.1|AE004067_10 (AE004067) pseudouridylate synthase [Xylella fastidiosa 9a5c]
Length = 330
Score = 72.8 bits (177), Expect = 3e-12
Identities = 68/264 (25%), Positives = 117/264 (43%), Gaps = 48/264 (18%)
Query: 7 ILSVQENISHKKAKALIDSGLVSIGGKKLMVARK-------ELPKNTHFSVQKVEKPS-- 57
+LS + + L+ SG V + G ++ RK LP + + PS
Sbjct: 36 LLSKLKGVPRSLIYKLVRSGQVRVNGGRVKAERKLDGGDEIRLPPLRLIQDRAIVAPSAA 95
Query: 58 --------VIFEDENILALFKPPFIESYDLASFFKG-------------WALLHRLDKET 96
++FED +LAL KP + S+ + G L+HRLD++T
Sbjct: 96 FLARMEAAIVFEDARLLALNKPSGMASHGGSGISYGVIEAMRILRPKQELELVHRLDRDT 155
Query: 97 SGVVLLVKENS---EFHLKAKKAF----KDRAVKKEYLALTQGIIEEE-REINAP--ILT 146
SG++++ K+ + E ++A + R + K YL L G + ++AP I
Sbjct: 156 SGLLIMAKKRAALIELQALMREASVNGKEGRGIAKRYLTLLSGRMPNGVMSVDAPLHINL 215
Query: 147 FKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDT 206
+ + ++ G+ + + L+ ++ +V I+TGRTHQIRVH +H+ HP+ GD
Sbjct: 216 RQGGERHVRVHHDGKPSKSRFRLLERRGGQSYCEVLIETGRTHQIRVHAQHLGHPVTGDD 275
Query: 207 LYNNEPSLAK--------RLMLHA 222
Y ++ + RL LHA
Sbjct: 276 KYGDQEVNRRLRDQIGLQRLFLHA 299
>ref|NP_220177.1| (NC_000117) (Pseudouridine Synthase) [Chlamydia trachomatis]
pir||D71487 probable (pseudouridine synthase) - Chlamydia trachomatis
(serotype D, strain UW3/Cx)
gb|AAC68253.1| (AE001336) (Pseudouridine Synthase) [Chlamydia trachomatis]
Length = 334
Score = 72.4 bits (176), Expect = 4e-12
Identities = 50/146 (34%), Positives = 80/146 (54%), Gaps = 10/146 (6%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER---EINAPI 144
++HRLDK+TSG+++ VK L ++ F + VKK Y+A+ +ER I
Sbjct: 144 IVHRLDKDTSGLLITVKTRRAKALYSE-LFATKQVKKLYVAICINAPSQERIHTRIARHP 202
Query: 145 LTFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIG 204
L K S ++ G+EA+T L + +++ + +TGRTHQ+RVH+KH+ PI+G
Sbjct: 203 LKRKEMTVLSTHAEGGKEAITHCQVLATNGRLSVVALYPETGRTHQLRVHMKHLGTPILG 262
Query: 205 DTLYNNEPSLAKRL-----MLHAHKI 225
D +Y PS+ R LHA+ +
Sbjct: 263 DPVY-GIPSINFRYGLDKQQLHAYSL 287
>ref|NP_642429.1| (NC_003919) pseudouridylate synthase [Xanthomonas axonopodis pv.
citri str. 306]
gb|AAM36965.1| (AE011847) pseudouridylate synthase [Xanthomonas axonopodis pv.
citri str. 306]
Length = 328
Score = 72.4 bits (176), Expect = 4e-12
Identities = 53/183 (28%), Positives = 93/183 (49%), Gaps = 22/183 (12%)
Query: 57 SVIFEDENILALFKPPFIESYDLASFFKG-------------WALLHRLDKETSGVVLLV 103
+++FED +LAL KP + S+ + G L+HRLD++TSG++++
Sbjct: 101 AIVFEDARLLALNKPSGVASHGGSGISFGAIETLRALRPNQSLELVHRLDRDTSGLLIVA 160
Query: 104 KENSEFH-----LKAKKAFKDRAVKKEYLALTQGIIEEE-REINAP--ILTFKTTKAFSK 155
K+ S ++ + R + K YL L G + + ++AP I + + +
Sbjct: 161 KKRSALTELQALMREDDRVEGRGITKRYLTLLVGRMPDGVMTVDAPLHIGLRQGGERHVQ 220
Query: 156 ISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLA 215
++ G+ +++ L+ + +V I+TGRTHQIRVH +H+ HP+ GD Y E +
Sbjct: 221 VNAIGKPSLSHFKLLERRGGHSYCEVRIETGRTHQIRVHAQHLGHPVAGDDKY-GEADVN 279
Query: 216 KRL 218
KRL
Sbjct: 280 KRL 282
>ref|NP_011685.1| (NC_001139) RNA:Psi-synthase; Pus6p [Saccharomyces cerevisiae]
sp|P53294|YG3X_YEAST Hypothetical 46.8 kDa protein in CLC1-PDS2 intergenic region
pir||S64480 hypothetical protein YGR169c - yeast (Saccharomyces cerevisiae)
emb|CAA97195.1| (Z72954) ORF YGR169c [Saccharomyces cerevisiae]
Length = 404
Score = 72.4 bits (176), Expect = 4e-12
Identities = 57/186 (30%), Positives = 88/186 (46%), Gaps = 35/186 (18%)
Query: 57 SVIFEDENILALFKPPFIESYDLASFFKGWAL------------LHRLDKETSGVVLLVK 104
+++FEDE+IL + KP I + F++ +RLDK TSG+++L K
Sbjct: 120 NIVFEDESILVIDKPSGIPVHPTGQFYQNTITELLKLHGVDALPCYRLDKITSGLLILAK 179
Query: 105 ENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREI----NAPILTFKTTKAFS------ 154
NS+ + +K+ + R + K YLA +G I NA TF+ T +
Sbjct: 180 -NSQSAGEIQKSIRSRDMIKIYLARVKGRFPHSELILDNENAAETTFEDTSKVTVEMTPI 238
Query: 155 -KISKKGQ---------EAVTIITPLKIINKKTLLKVGIK--TGRTHQIRVHLKHINHPI 202
I K Q +A+T P++ + V K TGRTHQIR+HL + HPI
Sbjct: 239 YSIDPKRQFPVGLSTSKDAITKFYPIRYFSHADETVVACKPITGRTHQIRIHLARLGHPI 298
Query: 203 IGDTLY 208
+ D++Y
Sbjct: 299 VNDSVY 304
>ref|NP_592881.1| (NC_003424) hypothetical protein [Schizosaccharomyces pombe]
sp|Q09709|YA32_SCHPO Hypothetical protein C18B11.02c in chromosome I
pir||S58301 hypothetical protein SPAC18B11.02c - fission yeast
(Schizosaccharomyces pombe)
pir||T37912 hypothetical protein SPAC18B11.02c - fission yeast
(Schizosaccharomyces pombe)
emb|CAA90587.1| (Z50728) hypothetical protein [Schizosaccharomyces pombe]
Length = 394
Score = 72.4 bits (176), Expect = 4e-12
Identities = 53/184 (28%), Positives = 87/184 (46%), Gaps = 31/184 (16%)
Query: 58 VIFEDENILALFKPPFIESYDLASFFKGWAL--------------LHRLDKETSGVVLLV 103
++ EDE+ + + KP + + + L +RLD+ TSG++
Sbjct: 107 IVHEDESYVVIDKPAGVPVHPTGRYNHNTVLHILMKENKCSLLYPCNRLDRLTSGLMFFS 166
Query: 104 K-----ENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREI--NAPILTFKTTKAFSKI 156
K E H+ +K ++KKEY+A G E+ +AP+LT T ++I
Sbjct: 167 KSPKAAEEMRVHMISK------SLKKEYVARVIGEFPNSGEVICDAPLLTVAPTLGLNRI 220
Query: 157 SKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNE----P 212
G+EA T+ + +L+ TGRTHQ+RVHL+++ +PI D +Y N+ P
Sbjct: 221 HPDGKEASTVFKRIAFDGHTSLVLCKPLTGRTHQLRVHLQYLGYPIANDPIYANKRVWGP 280
Query: 213 SLAK 216
SL K
Sbjct: 281 SLGK 284
>ref|NP_539294.1| (NC_003317) RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D
[Brucella melitensis]
gb|AAL51558.1| (AE009479) RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D
[Brucella melitensis]
Length = 347
Score = 72.0 bits (175), Expect = 5e-12
Identities = 61/271 (22%), Positives = 119/271 (43%), Gaps = 50/271 (18%)
Query: 14 ISHKKAKALIDSGLVSIGGKKLMVARKELPKNTHFSVQKVEKP-----------SVIFED 62
+S + ++LI G V+I G +++L + + ++ E +++ED
Sbjct: 40 LSRSRVQSLIADGHVTIDGAPARETKQKLREGMNIAIVLPEPEPAEPQGENIPLDILYED 99
Query: 63 ENILALFKPPFI----------------------ESYDLASFFKGWALLHRLDKETSGVV 100
++++ + KP + +S + ++HRLDK+TSGV+
Sbjct: 100 DDLIVINKPAGLVVHPGNGNWTGTLVNALIYQCGDSLSGIGGIRRPGIVHRLDKDTSGVM 159
Query: 101 LLVKENSEFHLKAKKAFKDRA----VKKEYLALTQGIIEEEREINAPIL--TFKTTKAFS 154
++ K N H + F D +++ YLAL G+ E + L + + +
Sbjct: 160 VVAK-NDRAHRHLSEQFADHGRTGDLERAYLALVWGMTERPQGTVDAYLGRSHRDRTKQA 218
Query: 155 KISKKGQEAVTIITPLKIINK----------KTLLKVGIKTGRTHQIRVHLKHINHPIIG 204
+ ++ ++A IT + K +L++ ++TGRTHQIRVH+ HI HP++G
Sbjct: 219 VVHEEREDARHAITHYATVEKFSPREDATALASLVECRLETGRTHQIRVHMAHIGHPLVG 278
Query: 205 DTLYNNEPSLAKRLMLHAHKIALLGYEFEAI 235
D Y + + K A+ G+ +A+
Sbjct: 279 DMDYGSAYKTKANKLPEPLKEAVQGFHRQAL 309
>ref|NP_637448.1| (NC_003902) pseudouridylate synthase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gb|AAM41372.1| (AE012314) pseudouridylate synthase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
Length = 327
Score = 71.6 bits (174), Expect = 7e-12
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 22/183 (12%)
Query: 57 SVIFEDENILALFKPPFIESYDLASFFKG-------------WALLHRLDKETSGVVLLV 103
+++FED +LAL KP + S+ + G L+HRLD++TSG++++
Sbjct: 101 AIVFEDARLLALNKPTGVASHGGSGISFGAIETLRALRPNQTLELVHRLDRDTSGLLIVA 160
Query: 104 KENSEF-HLKAKKAFKDR----AVKKEYLALTQGIIEEE-REINAP--ILTFKTTKAFSK 155
K+ S L+A DR ++ K YL L G + + ++AP I + + +
Sbjct: 161 KKRSALTELQALMREDDRVDGRSITKRYLTLLVGRMPDGVMSVDAPLHIGLRQGGERHVQ 220
Query: 156 ISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLA 215
++ G+ +++ L+ + +V I+TGRTHQIRVH +H+ H + GD Y +P +
Sbjct: 221 VNAIGKPSLSHFRLLERRGGHSYCEVRIETGRTHQIRVHAQHLGHAVAGDDKY-GDPEVN 279
Query: 216 KRL 218
KRL
Sbjct: 280 KRL 282
>ref|NP_221194.1| (NC_000963) SFHB PROTEIN HOMOLOG (sfhB) [Rickettsia prowazekii]
pir||F71646 sfhB protein homolog (sfhB) RP846 - Rickettsia prowazekii
emb|CAA15270.1| (AJ235273) SFHB PROTEIN HOMOLOG (sfhB) [Rickettsia prowazekii]
Length = 313
Score = 71.6 bits (174), Expect = 7e-12
Identities = 45/127 (35%), Positives = 69/127 (53%), Gaps = 5/127 (3%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREI--NAPIL 145
++HRLDK+T+G++++ K N++ H+ K R V ++Y AL G+I I N
Sbjct: 132 IVHRLDKDTTGLMVVAK-NNKTHILLANQIKQRQVIRKYKALVWGVINPLEGIIKNNVGR 190
Query: 146 TFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIK--TGRTHQIRVHLKHINHPII 203
K + + G++AVT L++ TL V K TGRTHQIRV L ++ H ++
Sbjct: 191 NRNNRKKMTILKYGGKKAVTYYKTLELFYGGTLSMVECKLSTGRTHQIRVQLSNLKHSVV 250
Query: 204 GDTLYNN 210
GD Y N
Sbjct: 251 GDQTYGN 257
>ref|NP_385495.1| (NC_003047) PROBABLE RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE
C PROTEIN [Sinorhizobium meliloti]
emb|CAC45968.1| (AL591787) PROBABLE RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE
C PROTEIN [Sinorhizobium meliloti]
Length = 330
Score = 71.2 bits (173), Expect = 9e-12
Identities = 57/197 (28%), Positives = 92/197 (45%), Gaps = 30/197 (15%)
Query: 58 VIFEDENILALFKPPFIE-------SYDLASFFKGWA--------LLHRLDKETSGVVLL 102
V+ ED ++ L KP + + + + W L+HRLD++TSGV+++
Sbjct: 97 VLHEDAKVIVLNKPAGLAVQGGSGVNRHIDKMLEAWTSQKGEKPRLVHRLDRDTSGVLVV 156
Query: 103 VKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSK--ISKKG 160
+ + AF++R KK Y AL +G+ + + + L + T + I+K G
Sbjct: 157 ARTRGAAQ-QLTAAFRERDTKKTYWALVRGVPRKREDKISTWLVKEPTPDGDRVRIAKHG 215
Query: 161 QEAVT-IITPLKIINKK----TLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEP--- 212
++ I+ +I+ + L++ TGRTHQ+RVH HI HPIIGD Y
Sbjct: 216 EDGADHAISYYRIVEQAGQNLAWLEMEPYTGRTHQLRVHAAHIGHPIIGDPKYFEADVNW 275
Query: 213 ----SLAKRLMLHAHKI 225
+ RL LHA I
Sbjct: 276 TFPGGMQNRLHLHARHI 292
>ref|NP_360947.1| (NC_003103) sfhB protein homolog [Rickettsia conorii]
gb|AAL03848.1| (AE008677) sfhB protein homolog [Rickettsia conorii]
Length = 313
Score = 71.2 bits (173), Expect = 9e-12
Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEE-EREINAPILT 146
++HRLDK+T+G++++ K N++ H+ + R V ++Y L G+I E I I
Sbjct: 132 IVHRLDKDTTGLMVVAK-NNKAHMLLANQIEQRQVIRKYKVLVWGVINPLEGVIKNNIGR 190
Query: 147 FKTTKAFSKISKKG-QEAVTIITPLKIINKKTLLKVGIK--TGRTHQIRVHLKHINHPII 203
++ + I K G +EAVT L++ K ++ V K TGRTHQIRV L H+ H ++
Sbjct: 191 SRSDRQKMTILKYGGKEAVTHYKILELFYKGSISMVECKLSTGRTHQIRVQLSHLKHSVV 250
Query: 204 GDTLYNN 210
GD Y N
Sbjct: 251 GDQTYGN 257
>ref|NP_212949.1| (NC_001318) conserved hypothetical protein [Borrelia burgdorferi]
pir||F70201 conserved hypothetical protein BB0815 - Lyme disease spirochete
gb|AAC67167.1| (AE001180) conserved hypothetical protein [Borrelia burgdorferi]
Length = 297
Score = 70.9 bits (172), Expect = 1e-11
Identities = 60/227 (26%), Positives = 100/227 (43%), Gaps = 41/227 (18%)
Query: 40 KELPKNTHFSVQKVEKPSV---------IFEDENILALFKPP-----------------F 73
K L +N + + K K ++ I+ED ++L L K +
Sbjct: 67 KSLAQNLNLTTDKCFKSNIDFQYIRKRIIYEDSDLLVLDKQKGILVHGGKNSLDFLVNSY 126
Query: 74 IESYDLASFFKGWALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGI 133
+ S +L S + +HRLD+ TSG+++ K N K +AF ++ K+Y A+ G
Sbjct: 127 LLSQNLRSLSFKPSAVHRLDRNTSGIIIFAK-NINTARKLSEAFSGGSIIKKYFAILLG- 184
Query: 134 IEEEREINAPIL-------TFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTG 186
E+ +P++ + K F K A+T + P+ + TL+++ I+TG
Sbjct: 185 -----EVKSPVVYKNHLFRNKRLRKTFVLEDKNFVNAITKVNPILSCKRATLVEIVIETG 239
Query: 187 RTHQIRVHLKHINHPIIGDTLYNNEPSLAKRLMLHAHKIALLGYEFE 233
THQIR NHP+I D Y N+ + LHA + G F+
Sbjct: 240 FTHQIRSQCSFNNHPLINDKKYCNKFKKSD-YFLHAFLVKFNGTFFK 285
>gb|EAA14556.1| (AAAB01008980) ebiP4675 [Anopheles gambiae str. PEST]
Length = 472
Score = 70.9 bits (172), Expect = 1e-11
Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 16/170 (9%)
Query: 57 SVIFEDENILALFKPPFIESYDLASF--------------FKGWALLHRLDKETSGVVLL 102
+++ D++I+ + KP I + + K +HRLD+ TSG++L
Sbjct: 141 TIVHMDDDIVVVNKPASIPVHPCGRYRHNTVVFILAKEYNLKNLRTIHRLDRLTSGLLLF 200
Query: 103 VKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER-EINAPILTFKTTKAFSKISKKGQ 161
+ + + + ++R V+KEY+ +G + E PI K+S KG+
Sbjct: 201 GRSPKKAR-QMEHQIRNRQVQKEYICRVEGEFPDGIIECKEPIEVVSYKIGVCKVSPKGK 259
Query: 162 EAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNE 211
E T L +++ TGR HQIRVHL+++ +P++ D LYN++
Sbjct: 260 ECTTTFQKLGFNGNSSVVLCKPLTGRMHQIRVHLQYLGYPVVNDPLYNHD 309
>ref|NP_010248.1| (NC_001136) Hypothetical ORF; Ydl036cp [Saccharomyces cerevisiae]
sp|Q12069|YD36_YEAST Hypothetical 53.4 kDa protein in PRP9-NAT1 intergenic region
pir||S67569 hypothetical protein YDL036c - yeast (Saccharomyces cerevisiae)
emb|CAA96453.1| (Z71781) unknown [Saccharomyces cerevisiae]
emb|CAA98595.1| (Z74084) ORF YDL036c [Saccharomyces cerevisiae]
Length = 462
Score = 70.5 bits (171), Expect = 2e-11
Identities = 57/180 (31%), Positives = 90/180 (49%), Gaps = 35/180 (19%)
Query: 58 VIFEDENILALFKPPFIESYDLASFF-----------KGWAL--LHRLDKETSGVVLLVK 104
VIFED+NI+ + KP I + + G+ + +RLD+ TSG++ L K
Sbjct: 190 VIFEDDNIMVIDKPSGIPVHPTGRYRFNTITKMLQNNLGFVVNPCNRLDRLTSGLMFLAK 249
Query: 105 -----ENSEFHLKAKKAFKDRAVKKEYLALTQG-------IIEEEREINAPILTFKTTKA 152
+N LKA R V KEY+A G I+E+ ++ P L A
Sbjct: 250 TPKGADNIGDQLKA------REVTKEYVAKVVGEFPETEVIVEKPLKLIEPRLALN---A 300
Query: 153 FSKISKKG-QEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNE 211
++ +KG + A T+ + K +++K TGR+HQIRVHL+++ HPI D +Y+N+
Sbjct: 301 VCQMDEKGAKHAKTVFNRISYDGKTSIVKCKPLTGRSHQIRVHLQYLGHPIANDPIYSND 360
>ref|NP_420097.1| (NC_002696) ribosomal large subunit pseudouridine synthase D
[Caulobacter crescentus CB15]
gb|AAK23265.1| (AE005803) ribosomal large subunit pseudouridine synthase D
[Caulobacter crescentus CB15]
Length = 270
Score = 70.1 bits (170), Expect = 2e-11
Identities = 63/208 (30%), Positives = 101/208 (48%), Gaps = 29/208 (13%)
Query: 58 VIFEDENILALFKPPFIES-------YDLASFFKGWA--------LLHRLDKETSGVVLL 102
V++EDE I+ L KP + S + L +A L+HRLD++TSGV+L
Sbjct: 36 VLYEDETIIVLNKPAGLSSQGGRIKAHTLDDLLWAFARPNRPRPKLVHRLDRDTSGVILT 95
Query: 103 VKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEERE-INAPILTFKTTK-AFSKISKKG 160
K + K A + + +K YLA+ G E + I++P+ + A+ ++ +
Sbjct: 96 AKTKPAAAMLGK-ALEAKRFRKSYLAIVAGAPEPKGGMIDSPLRRESIGREAYMRVCEPD 154
Query: 161 Q-EAVTIITPLKIINKK---TLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSL-- 214
+A T + + + L+++ TGR HQ+RVH+ I P+ GD+ Y L
Sbjct: 155 HPDAETARSRYRTLAHNGLAALVELSPDTGRMHQLRVHMASIGRPLAGDSRYGGALMLGG 214
Query: 215 --AKRLMLHAHKIAL---LGYEFEAIAP 237
A RLMLHA +A LG E + +AP
Sbjct: 215 VPAPRLMLHAASLAFPHPLGGERKILAP 242
>ref|NP_296413.1| (NC_002620) ribosomal large subunit pseudouridine synthase D
[Chlamydia muridarum]
pir||A81748 ribosomal large chain pseudouridine synthase D TC0029 [imported] -
Chlamydia muridarum (strain Nigg)
gb|AAF38920.1| (AE002271) ribosomal large subunit pseudouridine synthase D
[Chlamydia muridarum]
Length = 345
Score = 68.6 bits (166), Expect = 6e-11
Identities = 47/147 (31%), Positives = 81/147 (54%), Gaps = 12/147 (8%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTF 147
++HRLDK+TSG+++ VK + ++ F + +KK Y+A+ ++ I+ I
Sbjct: 155 IVHRLDKDTSGLLITVKTRRAKAVYSE-LFSSKQMKKMYIAICINS-PAQKHIHTRIARH 212
Query: 148 ----KTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPII 203
K SK ++ G+EA+T L + +++ + +TGRTHQ+RVH+KH+ PI+
Sbjct: 213 PVKRKEMTVLSKDTEGGKEAITHCHVLASNGRLSVVALYPETGRTHQLRVHMKHLGTPIL 272
Query: 204 GDTLYNNEPSLAKRL-----MLHAHKI 225
GD +Y PS+ R LHA+ +
Sbjct: 273 GDPVY-GVPSINFRYGLDKQQLHAYSL 298
>ref|NP_488120.1| (NC_003272) ribosomal large chain pseudouridine synthase A [Nostoc
sp. PCC 7120]
dbj|BAB75779.1| (AP003595) ribosomal large chain pseudouridine synthase A [Nostoc
sp. PCC 7120]
Length = 549
Score = 68.6 bits (166), Expect = 6e-11
Identities = 56/196 (28%), Positives = 104/196 (52%), Gaps = 23/196 (11%)
Query: 54 EKPSVIFEDENILALFKPP--------FIESYD--------LASFFKGWALLHRLDKETS 97
E+ +VI+EDE ++A+ KP +I++ D + + A +HRLD++TS
Sbjct: 340 EQINVIYEDEWLIAVNKPSGLLSVPGRYIDTQDSVLSRLRHMLPEEEMLAAVHRLDQDTS 399
Query: 98 GVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEERE-INAPILTFKTTKAFSKI 156
G++LL ++ S+ + + + F+ R V K Y A+ G+I + I+ P+ + + ++
Sbjct: 400 GILLLARD-SQTYRQFSQQFQQRQVYKVYEAILAGVINTDTGIIDLPLWGDPENRPYQQV 458
Query: 157 S-KKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVH---LKHINHPIIGDTLYNNEP 212
++G+ +VT + T ++ TGRTHQ+RVH ++ + I+GD Y
Sbjct: 459 DWQRGKPSVTNFREIAREGDYTRVEFVPLTGRTHQLRVHASDVQGLGVVILGDRFYGC-T 517
Query: 213 SLAKRLMLHAHKIALL 228
+ A RL LHA +++ L
Sbjct: 518 AKANRLHLHARELSFL 533
>gb|AAF52961.1| (AE003628) CG6187 gene product [Drosophila melanogaster]
Length = 569
Score = 67.8 bits (164), Expect = 1e-10
Identities = 57/216 (26%), Positives = 101/216 (46%), Gaps = 38/216 (17%)
Query: 29 SIGGKKLMVARKELPKNTHFS--------VQKVEKP------SVIFEDENILALFKPPFI 74
S+ KL V +++PK+ V + E P +++ D++I+ + KP I
Sbjct: 229 SLEAGKLTVNSEKVPKDYKIKHNDLLANVVHRHEVPVTSQPIKIVYMDKDIVVVNKPASI 288
Query: 75 ESYDLASF--------------FKGWALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDR 120
+ + K +HRLD+ TSG+ LL +E + + + R
Sbjct: 289 PVHPCGRYRHNTVVFILAKEHNLKNLRTIHRLDRLTSGL-LLFGRTAEKARELELQIRTR 347
Query: 121 AVKKEYLALTQG-----IIEEEREINAPILTFKTTKAFSKISKKGQEAVTIITPLKIINK 175
V+KEY+ +G I+E +I+ ++++K K+S KG++ T + +
Sbjct: 348 QVQKEYVCRVEGRFPDGIVECNEKID--VVSYKI--GVCKVSPKGKDCKTTFKRIGEVGS 403
Query: 176 KTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNE 211
+++ TGR HQIRVHL+ + +PI D LYN+E
Sbjct: 404 DSIVLCKPLTGRMHQIRVHLQFLGYPISNDPLYNHE 439
>ref|NP_609411.1| (NM_135567) CG6187 gene product [Drosophila melanogaster]
gb|AAL13915.1| (AY058686) LD40728p [Drosophila melanogaster]
Length = 547
Score = 67.8 bits (164), Expect = 1e-10
Identities = 57/216 (26%), Positives = 101/216 (46%), Gaps = 38/216 (17%)
Query: 29 SIGGKKLMVARKELPKNTHFS--------VQKVEKP------SVIFEDENILALFKPPFI 74
S+ KL V +++PK+ V + E P +++ D++I+ + KP I
Sbjct: 175 SLEAGKLTVNSEKVPKDYKIKHNDLLANVVHRHEVPVTSQPIKIVYMDKDIVVVNKPASI 234
Query: 75 ESYDLASF--------------FKGWALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDR 120
+ + K +HRLD+ TSG+ LL +E + + + R
Sbjct: 235 PVHPCGRYRHNTVVFILAKEHNLKNLRTIHRLDRLTSGL-LLFGRTAEKARELELQIRTR 293
Query: 121 AVKKEYLALTQG-----IIEEEREINAPILTFKTTKAFSKISKKGQEAVTIITPLKIINK 175
V+KEY+ +G I+E +I+ ++++K K+S KG++ T + +
Sbjct: 294 QVQKEYVCRVEGRFPDGIVECNEKID--VVSYKI--GVCKVSPKGKDCKTTFKRIGEVGS 349
Query: 176 KTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNE 211
+++ TGR HQIRVHL+ + +PI D LYN+E
Sbjct: 350 DSIVLCKPLTGRMHQIRVHLQFLGYPISNDPLYNHE 385
>ref|NP_275010.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||E81014 conserved hypothetical protein NMB2018 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF42341.1| (AE002552) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 220
Score = 67.8 bits (164), Expect = 1e-10
Identities = 55/164 (33%), Positives = 82/164 (49%), Gaps = 21/164 (12%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALT-------QGIIEEEREI 140
LLHRLDK+TSG++L N E F +++KK YLAL+ QG I+ E
Sbjct: 48 LLHRLDKQTSGILLFAL-NKESASALSGQFAGKSIKKTYLALSDRKPSKKQGWIKGGME- 105
Query: 141 NAPILTFKTTKAFSKISKKGQE-AVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHIN 199
K+ K+++ + AVT + I K L + TG+THQ+RV +K +
Sbjct: 106 -------KSRCGMWKLTRNTENIAVTRFHSISIAEKLRLFILEPHTGKTHQLRVAMKSLG 158
Query: 200 HPIIGDTLYNNEPSLAKRLMLHAHKIAL--LGYEFEAIAPKEFE 241
PI+GD+LY S + + L+A KI + E +AP + E
Sbjct: 159 SPILGDSLYGGTES--ETMFLYAWKIQFDYQNRQIEIVAPLKNE 200
>ref|NP_539900.1| (NC_003317) RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE C
[Brucella melitensis]
gb|AAL52164.1| (AE009538) RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE C
[Brucella melitensis]
Length = 343
Score = 67.4 bits (163), Expect = 1e-10
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTF 147
L+HR+D++TSGV+++ + +F++R KK Y AL +G+ + + + L
Sbjct: 157 LVHRIDRDTSGVLVVARTRGAAQALTA-SFRERDTKKTYWALVKGVPRKREDKISTWLVK 215
Query: 148 KTTKAFSK--ISKKGQ-EAVTIITPLKIINKK----TLLKVGIKTGRTHQIRVHLKHINH 200
+ T K + + G+ ++ ++ +II K L++ TGRTHQ+RVH +I H
Sbjct: 216 EQTPDGDKMRVCQHGEPDSDHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAAYIGH 275
Query: 201 PIIGDTLYNNEP-------SLAKRLMLHAHKIAL 227
PIIGD Y + KRL LHA +I +
Sbjct: 276 PIIGDPKYFEADQNWEFPGGIQKRLHLHARRIRI 309
>ref|NP_294685.1| (NC_001263) ribosomal large subunit pseudouridine synthase, Rlu
family [Deinococcus radiodurans]
pir||H75454 ribosomal large subunit pseudouridine synthase, Rlu family -
Deinococcus radiodurans (strain R1)
gb|AAF10535.1|AE001948_4 (AE001948) ribosomal large subunit pseudouridine synthase, Rlu
family [Deinococcus radiodurans]
Length = 257
Score = 67.4 bits (163), Expect = 1e-10
Identities = 53/183 (28%), Positives = 88/183 (47%), Gaps = 24/183 (13%)
Query: 54 EKPSVIFEDENILALFKPPF---------IESYDLASFFKG------WALLHRLDKETSG 98
EKP +I E + + KP ++ DL +F + A HRLD+ETSG
Sbjct: 20 EKPRIIVEHPDFYVVHKPALWLTHPVRARVDVPDLLTFMQAETGETDLAPPHRLDRETSG 79
Query: 99 VVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIE-EEREINAPILTFKTTKAFSKIS 157
LL ++ S+ FK V K YLA+ G E + R ++AP+ A +KI
Sbjct: 80 AQLLTRD-SDAARTFFTLFKTHLVGKTYLAIVHGEPEWDRRTLDAPLGDLGLGGA-NKIQ 137
Query: 158 KKGQ---EAVTIITPLKIINKKT---LLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNE 211
+ + +T +++ ++ L++ ++GR HQIR HL H+ P++GD +Y +
Sbjct: 138 IRQAVVPDGKPAVTDFRVVGRRAGHALIECYPRSGRLHQIRAHLAHLGLPMVGDKIYGRD 197
Query: 212 PSL 214
P +
Sbjct: 198 PQV 200
>ref|NP_283249.1| (NC_003116) putative psedouridine synthase [Neisseria meningitidis
Z2491]
pir||A81959 probable psedouridine synthase NMA0422 [imported] - Neisseria
meningitidis (group A strain Z2491)
emb|CAB83721.1| (AL162753) putative psedouridine synthase [Neisseria meningitidis
Z2491]
Length = 220
Score = 67.0 bits (162), Expect = 2e-10
Identities = 55/164 (33%), Positives = 82/164 (49%), Gaps = 21/164 (12%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALT-------QGIIEEEREI 140
LLHRLDK+TSG++L N E F +++KK YLAL+ QG I+ E
Sbjct: 48 LLHRLDKQTSGILLFAL-NRESASALSGQFVGKSIKKTYLALSDRKPSKKQGWIKGGME- 105
Query: 141 NAPILTFKTTKAFSKISKKGQE-AVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHIN 199
K+ K+++ + AVT + I K L + TG+THQ+RV +K +
Sbjct: 106 -------KSRCGMWKLTRNTENIAVTRFHSISIAEKLRLFILEPHTGKTHQLRVAMKSLG 158
Query: 200 HPIIGDTLYNNEPSLAKRLMLHAHKIAL--LGYEFEAIAPKEFE 241
PI+GD+LY S + + L+A KI + E +AP + E
Sbjct: 159 SPILGDSLYGGTES--ETMFLYAWKIQFDYQNRQIEIVAPLKNE 200
>sp|Q47417|YQCB_ERWCA Exoenzyme regulation regulon ORF1
pir||S45107 hypothetical protein 1 - Erwinia carotovora
emb|CAA55982.1| (X79474) ORF1 [Pectobacterium carotovorum]
Length = 376
Score = 66.6 bits (161), Expect = 2e-10
Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 22/160 (13%)
Query: 89 LHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTF- 147
+HRLD+ TSGV+LL +SE + F+ ++K Y A+ +G + ++ I+ +
Sbjct: 164 VHRLDRPTSGVLLLAL-SSEVARALSQQFESHQMQKTYHAVVRGYVLDDGVIDYALTEEL 222
Query: 148 -KTTKAFSKISKKGQEAVTIITPLKIIN-----------KKTLLKVGIKTGRTHQIRVHL 195
K F+ K Q AVT L + +L+++ +TGR HQ+R H+
Sbjct: 223 DKIADKFTNPDKAPQPAVTHYRSLAQAEMPVAIGRYPTARYSLMELKPQTGRKHQLRRHM 282
Query: 196 KHINHPIIGDTLYNN--------EPSLAKRLMLHAHKIAL 227
HI+HPIIGDT + + RLMLHA ++ L
Sbjct: 283 SHIHHPIIGDTAHGDLRHNRGMESHFSCGRLMLHASELQL 322
>ref|NP_102152.1| (NC_002678) ribosomal large subunit pseudouridine synthase C
[Mesorhizobium loti]
dbj|BAB47938.1| (AP002994) ribosomal large subunit pseudouridine synthase C
[Mesorhizobium loti]
Length = 326
Score = 66.6 bits (161), Expect = 2e-10
Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 19/156 (12%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTF 147
L+HRLD++TSGV L+V +K +AF+ R KK Y AL +G+ + + + L
Sbjct: 140 LVHRLDRDTSGV-LVVARTRLAAMKLSEAFRARETKKTYWALVKGVPPKREDKISTWLIK 198
Query: 148 KTTKAFSKI-----SKKGQEAVTIITPLKIINKK----TLLKVGIKTGRTHQIRVHLKHI 198
+ T+ ++ +KG + ++ +II + T L++ TGRTHQ+RVH +I
Sbjct: 199 EPTEDGDRVRVAAHGEKGADHA--VSYYRIIEQAAQTMTWLEMEPYTGRTHQLRVHAAYI 256
Query: 199 NHPIIGDTLYNNEPS-------LAKRLMLHAHKIAL 227
PIIGD Y + + RL LHA +I +
Sbjct: 257 GCPIIGDPKYFEADTNWDFPGGIQNRLHLHARRIII 292
>ref|NP_454707.1| (NC_003198) ribosomal large subunit pseudouridine synthase A
[Salmonella enterica subsp. enterica serovar Typhi]
emb|CAD01251.1| (AL627265) ribosomal large subunit pseudouridine synthase A
[Salmonella enterica subsp. enterica serovar Typhi]
Length = 219
Score = 66.2 bits (160), Expect = 3e-10
Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 21/189 (11%)
Query: 58 VIFEDENILALFKPPFIESYD-------------LASFFKGWALLHRLDKETSGVVLLVK 104
++++DE+I+ + KP + S + + +HRLD TSGV+++
Sbjct: 16 ILYQDEHIMVVNKPSGLLSVPGRLEAHKDSIMTRIQRDYPQAESVHRLDMATSGVIVVAL 75
Query: 105 ENSEFHLKAKKAFKDRAVKKEYLALTQGIIEE-EREINAPILTFKTTKAFSKIS-KKGQE 162
+ + K+ F++R KK+Y+A G E ++ P++ + K+ + G+
Sbjct: 76 TKAA-ERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKP 134
Query: 163 AVTIITPLKIINKKTLLKVGIK--TGRTHQIRVHLKHINHPIIGDTLYNNEP--SLAKRL 218
A T ++ T +V +K TGR+HQ+RVH+ + HPI+GD Y + SLA RL
Sbjct: 135 AQTEYNVVEFAADNTA-RVVLKPITGRSHQLRVHMLALGHPILGDQFYASPEALSLAPRL 193
Query: 219 MLHAHKIAL 227
LHA + +
Sbjct: 194 QLHAEMLTI 202
>ref|XP_128468.1| (XM_128468) RIKEN cDNA 2310051D06 gene [Mus musculus]
gb|AAH18186.1|AAH18186 (BC018186) Unknown (protein for MGC:25610) [Mus musculus]
Length = 306
Score = 66.2 bits (160), Expect = 3e-10
Identities = 59/175 (33%), Positives = 79/175 (44%), Gaps = 22/175 (12%)
Query: 85 GWALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER-EINAP 143
G+ H+LD TSG L V N A K FK+R V K YLAL +G ++E + IN
Sbjct: 59 GFRFCHQLDFSTSGA-LCVALNKAAAGSAYKCFKERRVTKAYLALVRGHVQESQVTINYA 117
Query: 144 ILTFKTTKAFSKISKKG----QEAVTIITPLKIIN---------KKTLLKVGIKTGRTHQ 190
I T + +G + +T L ++ K LLK TGRTHQ
Sbjct: 118 IGRNSTEGRTHTMCIEGTHGCENPKPSLTELLVLEHGLYAGDPVSKVLLKP--LTGRTHQ 175
Query: 191 IRVHLKHINHPIIGDTLY---NNEPSLAKRLMLHAH--KIALLGYEFEAIAPKEF 240
+RVH + HPI+GD Y ++ R+MLHA +I EA P F
Sbjct: 176 LRVHCSALGHPIVGDLTYGQAEDQEDQPFRMMLHAFYLRIPTQAERVEACTPDPF 230
>ref|NP_459100.1| (NC_003197) 23S rRNA pseudouridylate 746 synthase [Salmonella
typhimurium LT2]
gb|AAL19059.1| (AE008698) 23S rRNA pseudouridylate 746 synthase [Salmonella
typhimurium LT2]
Length = 219
Score = 66.2 bits (160), Expect = 3e-10
Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 21/189 (11%)
Query: 58 VIFEDENILALFKPPFIESYD-------------LASFFKGWALLHRLDKETSGVVLLVK 104
++++DE+I+ + KP + S + + +HRLD TSGV+++
Sbjct: 16 ILYQDEHIMVVNKPSGLLSVPGRLEAHKDSIMTRIQRDYPQAESVHRLDMATSGVIVVAL 75
Query: 105 ENSEFHLKAKKAFKDRAVKKEYLALTQGIIEE-EREINAPILTFKTTKAFSKIS-KKGQE 162
+ + K+ F++R KK+Y+A G E ++ P++ + K+ + G+
Sbjct: 76 TKAA-ERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKP 134
Query: 163 AVTIITPLKIINKKTLLKVGIK--TGRTHQIRVHLKHINHPIIGDTLYNNEP--SLAKRL 218
A T ++ T +V +K TGR+HQ+RVH+ + HPI+GD Y + SLA RL
Sbjct: 135 AQTEYNVVEFAADNTA-RVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEALSLAPRL 193
Query: 219 MLHAHKIAL 227
LHA + +
Sbjct: 194 QLHAEMLTI 202
>ref|NP_014575.1| (NC_001147) Riboflavin biosynthesis; Rib2p [Saccharomyces
cerevisiae]
sp|Q12362|RIB2_YEAST DRAP DEAMINASE
pir||S50972 RIB2 protein - yeast (Saccharomyces cerevisiae)
emb|CAA79742.1| (Z21618) DRAP deaminase [Saccharomyces cerevisiae]
emb|CAA99076.1| (Z74808) ORF YOL066c [Saccharomyces cerevisiae]
Length = 591
Score = 65.9 bits (159), Expect = 4e-10
Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 19/171 (11%)
Query: 58 VIFEDENILALFKPPFIESYDLASFF-----------KGWAL--LHRLDKETSGVVLLVK 104
++FEDE+IL + KP I + + G+++ +RLDK TSG++ L K
Sbjct: 163 IVFEDEDILVIDKPSSIPVHPTGRYRFNTITKMLERQLGYSVHPCNRLDKPTSGLMFLAK 222
Query: 105 ENSEFHLKAKKAFKDRAVKKEYLALTQG-----IIEEEREINAPILTFKTTKAFSKISKK 159
+ K R V KEY+A +G I+E ++ + + +
Sbjct: 223 TPLGADRMGDQ-MKAREVTKEYVARVKGEFPIGIVEVDKPVRSVNPKVALNAVCEMSDEN 281
Query: 160 GQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNN 210
+ A T+ + + +++K TGRTHQIRVHL+++ PI D +Y+N
Sbjct: 282 AKHAKTVFQRVSYDGQTSIVKCKPLTGRTHQIRVHLQYLGFPIANDPIYSN 332
>ref|NP_199927.1| (NM_124493) putative protein [Arabidopsis thaliana]
dbj|BAA97376.1| (AB023044) gene_id:MWD22.8~similar to unknown protein~sp|Q09709
[Arabidopsis thaliana]
Length = 395
Score = 65.9 bits (159), Expect = 4e-10
Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 40/241 (16%)
Query: 23 IDSGLVSIGGKKLMVAR--KELPKNTHFSVQKVEKPSVI------FEDENILALFKPPFI 74
+ SG + + G+ + V+ K K THF + + E P +I ++ +++ + KP +
Sbjct: 96 VKSGRIKVDGEIVPVSYIVKSSQKITHF-LHRHEPPVMIDDVVILHQEPDVVTVCKPASV 154
Query: 75 ESYDLASFFKGWAL--------------LHRLDKETSGVVLLVKENSEFHLKAKKAFKDR 120
+ + K + +HRLD+ SG++++ + ++ ++ +
Sbjct: 155 PVHPCGQYRKNTIVGILDAEHDLGTLFPIHRLDRLVSGLLIIARTAAKADF-FRQQIEGG 213
Query: 121 AVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKISK----------KGQEAVTIITPL 170
VKK Y+A G+ E+ I + + ++ S KG+ A T T +
Sbjct: 214 MVKKRYIAKVIGVFPEDEMIVDANINYNGSEGRSTAEDANSSGDDKKVKGKPACTKFTRI 273
Query: 171 KIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLY------NNEPSLAKRLMLHAHK 224
+L+ TGRTHQIRVHL++ HPI D LY N E +AKR+ K
Sbjct: 274 DTNGTHSLVSCEPVTGRTHQIRVHLQYTGHPIANDPLYLNQHIDNLETYIAKRIDAGERK 333
Query: 225 I 225
I
Sbjct: 334 I 334
>gb|AAM61068.1| (AY084499) unknown [Arabidopsis thaliana]
Length = 395
Score = 65.9 bits (159), Expect = 4e-10
Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 40/241 (16%)
Query: 23 IDSGLVSIGGKKLMVAR--KELPKNTHFSVQKVEKPSVI------FEDENILALFKPPFI 74
+ SG + + G+ + V+ K K THF + + E P +I ++ +++ + KP +
Sbjct: 96 VKSGRIKVDGEIVPVSYIVKSSQKITHF-LHRHEPPVMIDDVVILHQEPDVVTVCKPASV 154
Query: 75 ESYDLASFFKGWAL--------------LHRLDKETSGVVLLVKENSEFHLKAKKAFKDR 120
+ + K + +HRLD+ SG++++ + ++ ++ +
Sbjct: 155 PVHPCGQYRKNTIVGILDAEHDLGTLFSIHRLDRLVSGLLIIARTAAKADF-FRQQIEGG 213
Query: 121 AVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKISK----------KGQEAVTIITPL 170
VKK Y+A G+ E+ I + + ++ S KG+ A T T +
Sbjct: 214 MVKKRYIAKVIGVFPEDEMIVDANINYNGSEGRSTAEDANSSGDDKKVKGKPACTKFTRI 273
Query: 171 KIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLY------NNEPSLAKRLMLHAHK 224
+L+ TGRTHQIRVHL++ HPI D LY N E +AKR+ K
Sbjct: 274 DTNGTHSLVSCEPVTGRTHQIRVHLQYTGHPIANDPLYLNQHIDNLETYIAKRIDAGERK 333
Query: 225 I 225
I
Sbjct: 334 I 334
>gb|AAL31256.1| (AY061753) AT5g51140/MWD22_8 [Arabidopsis thaliana]
Length = 367
Score = 65.9 bits (159), Expect = 4e-10
Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 40/241 (16%)
Query: 23 IDSGLVSIGGKKLMVAR--KELPKNTHFSVQKVEKPSVI------FEDENILALFKPPFI 74
+ SG + + G+ + V+ K K THF + + E P +I ++ +++ + KP +
Sbjct: 68 VKSGRIKVDGEIVPVSYIVKSSQKITHF-LHRHEPPVMIDDVVILHQEPDVVTVCKPASV 126
Query: 75 ESYDLASFFKGWAL--------------LHRLDKETSGVVLLVKENSEFHLKAKKAFKDR 120
+ + K + +HRLD+ SG++++ + ++ ++ +
Sbjct: 127 PVHPCGQYRKNTIVGILDAEHDLGTLFPIHRLDRLVSGLLIIARTAAKADF-FRQQIEGG 185
Query: 121 AVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKISK----------KGQEAVTIITPL 170
VKK Y+A G+ E+ I + + ++ S KG+ A T T +
Sbjct: 186 MVKKRYIAKVIGVFPEDEMIVDANINYNGSEGRSTAEDANSSGDDKKVKGKPACTKFTRI 245
Query: 171 KIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLY------NNEPSLAKRLMLHAHK 224
+L+ TGRTHQIRVHL++ HPI D LY N E +AKR+ K
Sbjct: 246 DTNGTHSLVSCEPVTGRTHQIRVHLQYTGHPIANDPLYLNQHIDNLETYIAKRIDAGERK 305
Query: 225 I 225
I
Sbjct: 306 I 306
>ref|NP_562120.1| (NC_003366) ribosomal large subunit pseudouridine synthase C
[Clostridium perfringens]
dbj|BAB80910.1| (AP003189) ribosomal large subunit pseudouridine synthase C
[Clostridium perfringens]
Length = 324
Score = 65.5 bits (158), Expect = 5e-10
Identities = 61/237 (25%), Positives = 109/237 (45%), Gaps = 33/237 (13%)
Query: 3 KAYKILSVQENISHKKAK-ALIDSGLVSIGGKKLMVARKELPKNTHFSVQKVEKPSVIFE 61
KA + ++ N +K K +L++ ++ I + +V +++ K +F + V++E
Sbjct: 32 KALRKGDIRVNGKKQKEKYSLLEGDVIEIRYLQSVVTKEK--KKPNFQMVDSGSLQVVYE 89
Query: 62 DENILALFK-------------PPFIESYDLASFFKGW------------ALLHRLDKET 96
DEN+L + K P + Y L+ F+ A +RLD+ T
Sbjct: 90 DENMLLVEKWPGVLVHSDKKNGAPTLTDYVLSYLFRKGDYVPENELTFTPASCNRLDRNT 149
Query: 97 SGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKI 156
SG+V K N E + ++R VKK Y AL +G I+ + A I +
Sbjct: 150 SGIVFFGK-NFEGLKLLNEMIRERKVKKYYCALVKGKIQPGK-YEAYISKDDELNKSTVY 207
Query: 157 SKKGQEAVTIITPLKIINKK---TLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNN 210
+ + I +K++ +LL++ + TGR+HQ+R HL H+ +PI+GD Y +
Sbjct: 208 DTERPDTKKIKMDVKVLQTNGAFSLLEIELITGRSHQLRAHLAHLGNPIVGDFKYGD 264
>ref|NP_438215.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P43930|Y042_HAEIN Hypothetical protein HI0042
pir||B64000 hypothetical protein HI0042 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC21720.1| (U32689) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 224
Score = 65.5 bits (158), Expect = 5e-10
Identities = 43/142 (30%), Positives = 71/142 (49%), Gaps = 2/142 (1%)
Query: 84 KGWALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAP 143
K W L+HRLDK TSG+++L N+E + + F + + K YLAL+ ++++ +
Sbjct: 44 KVW-LVHRLDKVTSGLLILAL-NAESAAEFSRLFSEHKIHKTYLALSNQKPKKKQGLIIG 101
Query: 144 ILTFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPII 203
+ A+ K A+T + L + +TG+THQ+RV +K + PI+
Sbjct: 102 DMKKAREGAWKLCQTKDNPAITRFESVSCEPNLRLFILKPQTGKTHQLRVAMKSLGSPIL 161
Query: 204 GDTLYNNEPSLAKRLMLHAHKI 225
GD LY R LHA ++
Sbjct: 162 GDGLYGKNTEKIDRTYLHATQL 183
>ref|NP_245570.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK02717.1| (AE006099) unknown [Pasteurella multocida]
Length = 220
Score = 65.1 bits (157), Expect = 6e-10
Identities = 42/138 (30%), Positives = 69/138 (49%), Gaps = 1/138 (0%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTF 147
L+HRLDK TSG++LL N F + ++K YLAL+Q ++++ + +
Sbjct: 48 LVHRLDKITSGLLLLAL-NQRAARALSLLFAEHRIQKTYLALSQHKPKKKQGLIVGDMQK 106
Query: 148 KTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTL 207
A+ K A+T + L + +TG+THQ+RV +K + PI+GD L
Sbjct: 107 ARRGAWKLCPTKTNPAITRFHSINCEPNLRLFILKPQTGKTHQLRVAMKSLGSPILGDAL 166
Query: 208 YNNEPSLAKRLMLHAHKI 225
Y + R LHA+++
Sbjct: 167 YAGNSAKIDRTYLHAYRL 184
>ref|NP_404651.1| (NC_003143) Conserved hypothetical protein [Yersinia pestis]
emb|CAC89880.1| (AJ414146) Conserved hypothetical protein [Yersinia pestis]
Length = 257
Score = 64.3 bits (155), Expect = 1e-09
Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 37/206 (17%)
Query: 58 VIFEDENILALFKPP---------------FIESYDLASFFKGWALLHRLDKETSGVVLL 102
+I++DE+I+A+ KP F+ + +HRLD+ TSGV+L+
Sbjct: 4 IIYQDEHIVAVNKPAGWLVHRSWLDRNETVFVMQTVRDQIGQHVYTVHRLDRPTSGVLLM 63
Query: 103 VKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTF--KTTKAFSKISKKG 160
+ + + + F+ ++K Y A+ +G + E ++ + K F+K K
Sbjct: 64 ALSSDVARMLSLQ-FEQHQIQKTYHAVVRGYVLEGGTVDYAMAEELDKIADKFAKSDKAP 122
Query: 161 QEAVT-------IITPLKIINKKT----LLKVGIKTGRTHQIRVHLKHINHPIIGDTLYN 209
Q +V+ + PL I +T L+ + +TGR HQ+R H+ HI HPIIGD+ +
Sbjct: 123 QPSVSHYEALAQVEVPLAIGRYETARYSLVALKPETGRKHQLRRHMAHIRHPIIGDSTHG 182
Query: 210 N--------EPSLAKRLMLHAHKIAL 227
+ + RLMLHA + L
Sbjct: 183 DLRQNRGVAQHFGCSRLMLHASHLHL 208
>ref|NP_478072.1| (NM_058192) ribosomal large subunit pseudouridine synthase C like
[Homo sapiens]
emb|CAB53055.1| (AL031033) C321D2.1 (Ribosomal Large Subunit Pseudouridine Synthase
(EC 4.2.1.70, Pseudouridylate Synthase, Uracil
Hydrolase) LIKE protein) [Homo sapiens]
gb|AAK61255.1|AE006465_1 (AE006465) ribosomal large subunit pseudouridine synthase C like
[Homo sapiens]
gb|AAH11783.1|AAH11783 (BC011783) Unknown (protein for MGC:19600) [Homo sapiens]
Length = 312
Score = 63.9 bits (154), Expect = 1e-09
Identities = 51/155 (32%), Positives = 73/155 (46%), Gaps = 20/155 (12%)
Query: 85 GWALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPI 144
G+ H+LD TSG L V N A + FK+R V K YLAL +G I+E R +
Sbjct: 59 GFRFCHQLDFSTSGA-LCVALNKAAAGSAYRCFKERRVTKAYLALLRGHIQESRVTISHA 117
Query: 145 LTFKTTKAFSKI-----SKKGQEAVTIITPLKIIN---------KKTLLKVGIKTGRTHQ 190
+ +T+ + S+ + +T L ++ K LLK TGRTHQ
Sbjct: 118 IGRNSTEGRAHTMCIEGSQGCENPKPSLTDLVVLEHGLYAGDPVSKVLLKP--LTGRTHQ 175
Query: 191 IRVHLKHINHPIIGDTLY---NNEPSLAKRLMLHA 222
+RVH + HP++GD Y + R+MLHA
Sbjct: 176 LRVHCSALGHPVVGDLTYGEVSGREDRPFRMMLHA 210
>dbj|BAB13516.1| (AB037369) pseudouridine synthase homolog [Sinorhizobium meliloti]
Length = 264
Score = 63.9 bits (154), Expect = 1e-09
Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 38/188 (20%)
Query: 58 VIFEDENILALFKPPFIESYDLASFFKGW----------------------ALLHRLDKE 95
V++ED +++ L KP + + A + G ++HRLDK+
Sbjct: 13 VLYEDADLIVLVKPAGLVVHPGAGNWTGTLVNALIHHCGDSLSGIGGVKRPGIVHRLDKD 72
Query: 96 TSGVVLLVKENSEFHLKAKKAFKDRA----VKKEYLALTQGIIEEER-EINAPI--LTFK 148
TSGV+++ K N H F D +++ Y A+ G + + +I+AP+ +
Sbjct: 73 TSGVMVVAK-NDAAHRHLSDQFADHGRNGPLERAYRAVVWGRPRQLKGKIDAPLGRAGDR 131
Query: 149 TTKAFSKI-SKKGQEAVTIITPLKIINKK-------TLLKVGIKTGRTHQIRVHLKHINH 200
T +A + S +EA+T ++ ++K + ++ ++TGRTHQIRVH+ HI H
Sbjct: 132 TKRAVKREDSDDAREAITHYEVVERYHEKPDGTSLASTVECHLETGRTHQIRVHMAHIGH 191
Query: 201 PIIGDTLY 208
P+IGD Y
Sbjct: 192 PLIGDPDY 199
>ref|NP_414600.1| (NC_000913) pseudouridylate synthase; orf, hypothetical protein
[Escherichia coli K12]
sp|P39219|RLUA_ECOLI Ribosomal large subunit pseudouridine synthase A (Pseudouridylate
synthase) (Uracil hydrolyase)
pir||B64727 yabO protein - Escherichia coli
gb|AAC73169.1| (AE000116) pseudouridylate synthase [Escherichia coli K12]
Length = 219
Score = 63.5 bits (153), Expect = 2e-09
Identities = 45/145 (31%), Positives = 79/145 (54%), Gaps = 8/145 (5%)
Query: 89 LHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEE-EREINAPILTF 147
+HRLD TSGV+++ + + K+ F++R KK+Y+A G E ++ P++
Sbjct: 60 VHRLDMATSGVIVVALTKAA-ERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICD 118
Query: 148 KTTKAFSKIS-KKGQEAVTIITPLKIINKKTLLKVGIK--TGRTHQIRVHLKHINHPIIG 204
+ K+ + G+ A T ++ T +V +K TGR+HQ+RVH+ + HPI+G
Sbjct: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTA-RVVLKPITGRSHQLRVHMLALGHPILG 177
Query: 205 DTLYNNEP--SLAKRLMLHAHKIAL 227
D Y + ++A RL+LHA + +
Sbjct: 178 DRFYASPEARAMAPRLLLHAEMLTI 202
>ref|NP_597410.1| (NC_003232) similarity to HYPOTHETICAL PROTEIN OF THE FAMILY OF
PSEUDOURIDINE SYNTHASES YD36_YEAST [Encephalitozoon
cuniculi]
emb|CAD26587.1| (AL590445) similarity to HYPOTHETICAL PROTEIN OF THE FAMILY OF
PSEUDOURIDINE SYNTHASES YD36_YEAST [Encephalitozoon
cuniculi]
Length = 318
Score = 62.8 bits (151), Expect = 3e-09
Identities = 50/204 (24%), Positives = 95/204 (46%), Gaps = 23/204 (11%)
Query: 23 IDSGLVSIGGKKLMVAR-----KELPKNTHFSVQKVEKPSVIFEDENILALFKPPFIESY 77
++ G++++ G+ + R + H + VI E+ + + + KPP I +
Sbjct: 45 LECGVITVNGEAVKPTRILGMGDVIRHTVHIHDPAHPEIGVIKEEGDYIVVNKPPGIPCH 104
Query: 78 DLASFFKGW-----------ALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEY 126
+ + A ++RLD SGV++L N H K +A +D KK Y
Sbjct: 105 PTGGYREYCVTKALFGDEKVACINRLDMPVSGVLILAVRN---HSKCLEAIRD--AKKIY 159
Query: 127 LALTQGIIEEEREINAPILTFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTG 186
+A G+ ++ +++ I T + ++ G+ +T+ L+ + +L++ TG
Sbjct: 160 VAKVYGMFPDKVDVDKRIGC--TEGRYRHVNAGGKACLTLFRRLEYRDGYSLVECRPVTG 217
Query: 187 RTHQIRVHLKHINHPIIGDTLYNN 210
RTHQIR+HL+ I PI D +Y +
Sbjct: 218 RTHQIRIHLQSIGFPIANDIMYGD 241
>ref|NP_285754.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_308089.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG54362.1|AE005182_11 (AE005182) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB33485.1| (AP002550) hypothetical protein [Escherichia coli O157:H7]
Length = 219
Score = 62.4 bits (150), Expect = 4e-09
Identities = 44/145 (30%), Positives = 78/145 (53%), Gaps = 8/145 (5%)
Query: 89 LHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEE-EREINAPILTF 147
+HRLD TSGV+++ + + K+ F++R KK+Y+ G E ++ P++
Sbjct: 60 VHRLDMATSGVIVVALTKAA-ERELKRQFRERVPKKQYVTRVWGHPSPAEGLVDLPLICD 118
Query: 148 KTTKAFSKIS-KKGQEAVTIITPLKIINKKTLLKVGIK--TGRTHQIRVHLKHINHPIIG 204
+ K+ + G+ A T ++ T +V +K TGR+HQ+RVH+ + HPI+G
Sbjct: 119 WPNRPKQKVCYETGKPAQTEYEVVEYAADNTA-RVVLKPITGRSHQLRVHMLALGHPILG 177
Query: 205 DTLYNNEP--SLAKRLMLHAHKIAL 227
D Y + ++A RL+LHA + +
Sbjct: 178 DRFYASPEARAMAPRLLLHAEMLTI 202
>ref|NP_218671.1| (NC_000919) conserved hypothetical protein [Treponema pallidum]
pir||A71349 conserved hypothetical protein TP0231 - syphilis spirochete
gb|AAC65220.1| (AE001205) conserved hypothetical protein [Treponema pallidum]
Length = 216
Score = 62.4 bits (150), Expect = 4e-09
Identities = 53/152 (34%), Positives = 73/152 (47%), Gaps = 22/152 (14%)
Query: 89 LHRLDKETSGVVLLVKENSEFHLKAKKAFK----DRAVKKEYLALTQGIIEEE-REINAP 143
LHRLDK+T+GV+L K H +A ++ V K Y AL G E +I P
Sbjct: 48 LHRLDKDTAGVLLFAK-----HARAAALYQGILGSMRVIKRYRALCFGRPPRECGDIRVP 102
Query: 144 ILTFKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPII 203
I T + + + A T L+ + T L++ + +GRTHQIR+HL + PII
Sbjct: 103 IRTGTAARRRQVV----RAAHTAYRVLRATDTHTYLELTLHSGRTHQIRIHLAALGCPII 158
Query: 204 GDTLY-----NNEPSLA---KRLMLHAHKIAL 227
GD Y N + A KRL L AH + L
Sbjct: 159 GDDKYGDFARNKACARAWGVKRLQLFAHSLVL 190
>ref|XP_134644.1| (XM_134644) RIKEN cDNA 2410001E19 [Mus musculus]
dbj|BAB26852.1| (AK010322) data source:SPTR, source key:Q9HZM9,
evidence:ISS~putative~related to RIBOSOMAL LARGE SUBUNIT
PSEUDOURIDINE SYNTHASE C [Mus musculus]
Length = 377
Score = 62.4 bits (150), Expect = 4e-09
Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 24/166 (14%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALT-------QGIIE---EE 137
L HRLDKET+GV++L E H + ++ F+ R V+K+Y A+T G+++ +E
Sbjct: 148 LCHRLDKETTGVMVLAWEKDMAH-QVQELFRTRQVEKKYWAITVRVPLPSAGVVDIPIKE 206
Query: 138 REINAPILTFKTTKAFS-----------KISKKGQEAVTIITPLKIINKKTLLKVGIKTG 186
+E+ P K T + S + S+ AVT L + L+++ TG
Sbjct: 207 KEVQGPQQHHKMTLSPSYRLDNGKMVKVRASRDAHVAVTQYQVLSSASSSALVELQPVTG 266
Query: 187 RTHQIRVHLKH-INHPIIGDTLYNNEPSLAKRLMLHAHKIALLGYE 231
HQ+RVHL ++ PI+GD Y++ LA + L A + LG +
Sbjct: 267 IKHQLRVHLSFGLDCPILGDHKYSDWTRLAPQ-KLSAGTLKKLGLQ 311
>ref|NP_177732.1| (NM_106254) RNA pseudouridylate synthase, putative [Arabidopsis
thaliana]
Length = 430
Score = 62.0 bits (149), Expect = 5e-09
Identities = 44/142 (30%), Positives = 76/142 (52%), Gaps = 12/142 (8%)
Query: 88 LLHRLDKETSGVVLLVK-ENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER-EINAPIL 145
++HRLDK T+G++++ K E+S HL + FK +++ Y++LT G+ + I PI
Sbjct: 229 IVHRLDKGTTGLLVVAKDEHSHAHLAEQ--FKLHTIERVYVSLTTGVPSPPQGRIEIPIG 286
Query: 146 TFKTTK---AFSKISKKGQEAVTIITPLKIINK-----KTLLKVGIKTGRTHQIRVHLKH 197
+ + A +G A + K+I L++ ++TGRTHQIR H K+
Sbjct: 287 RDSSNRIRMAAIPGGVRGGRARHAASRYKVIETFAGGGSALVEWRLETGRTHQIRAHAKY 346
Query: 198 INHPIIGDTLYNNEPSLAKRLM 219
+ P++GD +Y S+A L+
Sbjct: 347 MGVPLLGDEVYGGTKSMALSLL 368
>gb|AAF26765.1|AC007396_14 (AC007396) T4O12.25 [Arabidopsis thaliana]
Length = 980
Score = 62.0 bits (149), Expect = 5e-09
Identities = 44/142 (30%), Positives = 76/142 (52%), Gaps = 12/142 (8%)
Query: 88 LLHRLDKETSGVVLLVK-ENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEER-EINAPIL 145
++HRLDK T+G++++ K E+S HL + FK +++ Y++LT G+ + I PI
Sbjct: 779 IVHRLDKGTTGLLVVAKDEHSHAHLAEQ--FKLHTIERVYVSLTTGVPSPPQGRIEIPIG 836
Query: 146 TFKTTK---AFSKISKKGQEAVTIITPLKIINK-----KTLLKVGIKTGRTHQIRVHLKH 197
+ + A +G A + K+I L++ ++TGRTHQIR H K+
Sbjct: 837 RDSSNRIRMAAIPGGVRGGRARHAASRYKVIETFAGGGSALVEWRLETGRTHQIRAHAKY 896
Query: 198 INHPIIGDTLYNNEPSLAKRLM 219
+ P++GD +Y S+A L+
Sbjct: 897 MGVPLLGDEVYGGTKSMALSLL 918
>ref|NP_190794.1| (NM_115086) pseudouridine synthase, putative [Arabidopsis thaliana]
Length = 346
Score = 61.6 bits (148), Expect = 7e-09
Identities = 60/224 (26%), Positives = 104/224 (45%), Gaps = 53/224 (23%)
Query: 32 GKKLMVARKELPK-NTHFSVQKVEKPSVIFEDENILALFKPPFIESYDLASFFKGWAL-- 88
G KL+ +R + +T +S++ V++ED++++AL KP ++ F + L
Sbjct: 78 GSKLVYSRLPWKEPDTPYSLE------VLYEDDDLIALNKPSGLQVLPGGLFQQRTVLTQ 131
Query: 89 ----------------------LHRLDKETSGVVLLVKEN-SEFHLKA------------ 113
+HRL + TSG++L K ++ L A
Sbjct: 132 LQWCFGKNDSYIGSRESPHPVPVHRLGRGTSGILLCAKTKLAKTKLAAYFAEGTSLVGSG 191
Query: 114 ---KKAFKDRAVKKEYLALTQGIIEEERE-INAPILTFK---TTKAFSKISKKGQEAVTI 166
++ R + K Y AL GI+EE+ I PI + + S +G+ A +
Sbjct: 192 NLDQECGTGRKLSKIYRALADGIVEEDEVVIKQPIGVVRYPGVAQGLYVASPEGKPAFSK 251
Query: 167 ITPLKIINKK--TLLKVGIKTGRTHQIRVHLKHINHPIIGDTLY 208
+ L+ +K +L+KV I++GR HQIR+HL ++ HP++GD LY
Sbjct: 252 VFVLERDREKNCSLVKVEIQSGRPHQIRIHLAYMGHPLVGDPLY 295
>ref|NP_295407.1| (NC_001263) pseudouridine synthase, putative [Deinococcus
radiodurans]
pir||B75366 probable pseudouridine synthase - Deinococcus radiodurans (strain
R1)
gb|AAF11241.1|AE002010_4 (AE002010) pseudouridine synthase, putative [Deinococcus
radiodurans]
Length = 321
Score = 61.6 bits (148), Expect = 7e-09
Identities = 53/166 (31%), Positives = 78/166 (46%), Gaps = 16/166 (9%)
Query: 58 VIFEDENILALFKPPFIESYDLASFFKGWAL------------LHRLDKETSGVVLLVKE 105
VI+ED ++LA+ KP + + F + L LHRL + TSG+VL
Sbjct: 105 VIYEDADLLAVSKPSGLPTMPGGGFLEHTLLHQVRGRWPDASPLHRLGRGTSGLVLF-SL 163
Query: 106 NSEFHLKAKKAFKDRAVKKEYLALTQGIIEE-EREINAPI--LTFKTTKAFSKISKKGQE 162
S+ K ++ V+K Y AL+ G+ E+ E +I PI + S G+
Sbjct: 164 TSQAGAALLKDWRAGRVQKVYRALSAGVAEQDEYDITVPIGPVAHPRLGQVFAASTAGKT 223
Query: 163 AVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLY 208
A + L+ TL +V I TGR HQIR+HL + P+ D LY
Sbjct: 224 AHSRARVLERREDTTLFEVEIFTGRPHQIRIHLASLGLPLAVDPLY 269
>ref|NP_231304.1| (NC_002505) pseudouridine synthase Rlu family protein [Vibrio
cholerae]
pir||E82173 pseudouridine synthase Rlu family protein VC1668 [imported] -
Vibrio cholerae (group O1 strain N16961)
gb|AAF94818.1| (AE004244) pseudouridine synthase Rlu family protein [Vibrio
cholerae]
Length = 235
Score = 61.2 bits (147), Expect = 9e-09
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTF 147
L+HRLDK TSG++LL + N+ + + F R V+K YLA+ ++++ + +
Sbjct: 46 LVHRLDKMTSGILLLAR-NATAASELSQGFAKRKVEKFYLAIGSKKPKKKQGLICGDMER 104
Query: 148 KTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTL 207
++ ++ + A+T + L TG+THQIRV LK I I+GD +
Sbjct: 105 SRRSSWKLVNSQENPAITQFFSAAAATGERLFLCKPHTGKTHQIRVALKSIGSAIVGDPI 164
Query: 208 YNNEPSLAKRLMLHA 222
YN + R LHA
Sbjct: 165 YNTADE-SDRGYLHA 178
>ref|NP_635620.1| (NC_003902) pseudouridylate synthase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gb|AAM39544.1| (AE012118) pseudouridylate synthase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
Length = 245
Score = 61.2 bits (147), Expect = 9e-09
Identities = 53/180 (29%), Positives = 83/180 (45%), Gaps = 6/180 (3%)
Query: 53 VEKPSVIFEDENILALFKPPFIESYDLASFFKGWALLHRLDKETSGVVLLVKENSEFHLK 112
V+KP+ + ++ LA + F+ + L+HRLD+ TSG +LL +
Sbjct: 20 VDKPAGLMVHDSKLARGEDDFLADRLRVQLGRPIFLVHRLDRATSGCLLLAFDRDTASAL 79
Query: 113 AKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSK-----ISKKGQEAVTII 167
K A V+K+YLA+ +G EER I L K K + + I
Sbjct: 80 GK-ALMAGEVEKDYLAICRGWPAEERFIVDHDLDGGPGKPIKKPAVTHFQRLATGELEIP 138
Query: 168 TPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKRLMLHAHKIAL 227
+ ++ LL+ +TGR QIR HLKH++H +IGDT + + ML H++ L
Sbjct: 139 STGFATSRYALLRCQPQTGRFRQIRRHLKHLSHHMIGDTSHGDGRHNRSFRMLGIHRMLL 198
>ref|NP_325948.1| (NC_002771) RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE C
(PSEUDOURIDYLATE SYNTHASE) (URACIL HYDROLYASE)
[Mycoplasma pulmonis]
emb|CAC13290.1| (AL445563) RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE C
(PSEUDOURIDYLATE SYNTHASE) (URACIL HYDROLYASE)
[Mycoplasma pulmonis]
Length = 282
Score = 60.1 bits (144), Expect = 2e-08
Identities = 60/205 (29%), Positives = 94/205 (45%), Gaps = 25/205 (12%)
Query: 54 EKPSVIFEDENILALFKPPFIESYDLASFFKGWALLH---------------RLDKETSG 98
+K +VIFED+NIL + K + + + L + RLDK TSG
Sbjct: 79 QKFNVIFEDQNILVINKQAGVSMHSDENSLDKQVLSYLNFKQVDSFVPSSIGRLDKVTSG 138
Query: 99 VVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPIL-TFKTTKAFSKIS 157
VV+ K S LK K+ + ++K Y+ ++ +E ++I + K +++
Sbjct: 139 VVVYAKNYSI--LKTLKS--NEHLRKTYVFMSNITLEPNQKIEHVFYHKYNPIKKKAELF 194
Query: 158 KKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKR 217
K+ E + IT + K + TGR HQIR L + PI GD Y + KR
Sbjct: 195 KENVEE-SKITKTLLYKVKNNNYAELITGRKHQIRATLSKLGFPIFGDVKYGGKKD--KR 251
Query: 218 LMLHAHKIAL--LGYEFEAIAPKEF 240
+ LH++KI L EFE + +EF
Sbjct: 252 VYLHSYKIKFHSLKGEFEYLNNQEF 276
>pir||T46096 hypothetical protein T25B15.30 - Arabidopsis thaliana
emb|CAC07917.1| (AL132972) putative protein [Arabidopsis thaliana]
Length = 376
Score = 59.7 bits (143), Expect = 3e-08
Identities = 61/233 (26%), Positives = 103/233 (44%), Gaps = 64/233 (27%)
Query: 32 GKKLMVARKELPK-NTHFSVQKVEKPSVIFEDENILALFKPPFIESYDLASFFKGWAL-- 88
G KL+ +R + +T +S++ V++ED++++AL KP ++ F + L
Sbjct: 78 GSKLVYSRLPWKEPDTPYSLE------VLYEDDDLIALNKPSGLQVLPGGLFQQRTVLTQ 131
Query: 89 ----------------------LHRLDKETSGVVLLVKEN-SEFHLKA------------ 113
+HRL + TSG++L K ++ L A
Sbjct: 132 LQWCFGKNDSYIGSRESPHPVPVHRLGRGTSGILLCAKTKLAKTKLAAYFAEGTSLVGSG 191
Query: 114 ---KKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTK-------------AFSKIS 157
++ R + K Y AL GI+EE+ P L F K S
Sbjct: 192 NLDQECGTGRKLSKIYRALADGIVEEDEA--RPFLLFVVIKQPIGVVRYPGVAQGLYVAS 249
Query: 158 KKGQEAVTIITPLKIINKK--TLLKVGIKTGRTHQIRVHLKHINHPIIGDTLY 208
+G+ A + + L+ +K +L+KV I++GR HQIR+HL ++ HP++GD LY
Sbjct: 250 PEGKPAFSKVFVLERDREKNCSLVKVEIQSGRPHQIRIHLAYMGHPLVGDPLY 302
>ref|NP_640600.1| (NC_003919) pseudouridylate synthase [Xanthomonas axonopodis pv.
citri str. 306]
gb|AAM35136.1| (AE011649) pseudouridylate synthase [Xanthomonas axonopodis pv.
citri str. 306]
Length = 244
Score = 59.3 bits (142), Expect = 4e-08
Identities = 53/192 (27%), Positives = 85/192 (43%), Gaps = 6/192 (3%)
Query: 53 VEKPSVIFEDENILALFKPPFIESYDLASFFKGWALLHRLDKETSGVVLLVKENSEFHLK 112
V+KP+ + ++ LA + F+ K L+HRLD+ TSG +LL +
Sbjct: 20 VDKPAGLMVHDSKLARGEDDFLADRLREQLGKPIFLVHRLDRATSGCLLLAFDRDSASAL 79
Query: 113 AKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSK-----ISKKGQEAVTII 167
K A V+K+YL + +G EER I L K K + + I
Sbjct: 80 GK-ALMAGEVEKQYLTVCRGWPAEERFIVDHDLDGGPGKPVKKPAVTHFQRLATGELEIP 138
Query: 168 TPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLAKRLMLHAHKIAL 227
+ ++ LL+ +TGR QIR H+KH++H ++GDT + + ML H++ L
Sbjct: 139 STGFTTSRYALLRCQPQTGRFRQIRRHMKHLSHHMVGDTSHGDGRHNRSFRMLGIHRMLL 198
Query: 228 LGYEFEAIAPKE 239
E P +
Sbjct: 199 HAERLEFPHPAD 210
>ref|NP_419272.1| (NC_002696) ribosomal large subunit pseudouridine synthase d
[Caulobacter crescentus CB15]
gb|AAK22440.1| (AE005719) ribosomal large subunit pseudouridine synthase d
[Caulobacter crescentus CB15]
Length = 342
Score = 58.5 bits (140), Expect = 6e-08
Identities = 59/256 (23%), Positives = 108/256 (42%), Gaps = 53/256 (20%)
Query: 13 NISHKKAKALIDSGLVSIGGKKLMVARKELPKNTHFSVQKVEKP----------SVIFED 62
++S + +ALI G ++ G+ + A ++ + V P S+++ED
Sbjct: 50 DLSRARLQALIAEGRLTFDGETVADASRKARAGVYSLVVPPPAPADPEPEALPLSILYED 109
Query: 63 ENILALFKPPFIESYDLASFFKGW----------------------ALLHRLDKETSGVV 100
+++ + K + + + G ++HRLDK+TSGV+
Sbjct: 110 AHLIVVDKAAGMAVHPAPGTYNGTLVNALLHHCGASLSGVGGVARPGIVHRLDKDTSGVM 169
Query: 101 LLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTT--------KA 152
+ K ++ H F + + Y+ALT+G N P T +T K
Sbjct: 170 VAAKSDAA-HRGLSTLFATHDIDRLYVALTRGAP------NPPTGTIQTQIGRSPGDRKK 222
Query: 153 FSKISKKGQEAVT---IITPLKIINKKTLLKVG--IKTGRTHQIRVHLKHINHPIIGDTL 207
+ + G+EA+T + ++ +V ++TGRTHQIRVH+ P +GD +
Sbjct: 223 MAVLRAGGREAITHYRVEAAFGPADRPLAARVACRLETGRTHQIRVHMASKGSPCLGDPV 282
Query: 208 YN-NEPSLAKRLMLHA 222
Y +P+ A R + A
Sbjct: 283 YGAAQPAAAVRERIEA 298
>ref|NP_077944.1| (NC_002162) pseudouridine synthase (uracil hydrolase) [Ureaplasma
urealyticum]
pir||C82933 pseudouridine synthase (uracil hydrolase) UU113 [imported] -
Ureaplasma urealyticum
gb|AAF30519.1|AE002111_8 (AE002111) pseudouridine synthase (uracil hydrolase) [Ureaplasma
urealyticum]
Length = 315
Score = 57.4 bits (137), Expect = 1e-07
Identities = 63/242 (26%), Positives = 103/242 (42%), Gaps = 49/242 (20%)
Query: 5 YKILSVQE-NISHKKAK---ALIDSGLVSIGGKKLMVARKELPKNTHFSVQKVEKPSVIF 60
YKI+ ++ ++HKK L ++ +VSI K+ + +K + F+ K E +I+
Sbjct: 34 YKIIRTKDVKVNHKKVDHNYLLKENDVVSIYAKENFLEKKV---DLSFANAKDEL-DIIY 89
Query: 61 EDENILALFKP-------------------------------PFIESYDLASFFKGWALL 89
ED+NIL + KP PF ES + S L
Sbjct: 90 EDKNILVVHKPIGLIVHEDNRYKNDTLQNRIKKYLVKKDEYHPFDESAFVPS------LC 143
Query: 90 HRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREI--NAPILTF 147
HRLD TSG+++ K + + + FK+ V + Y LT + + ++ N
Sbjct: 144 HRLDLNTSGLIVAAKTANALRV-ITEMFKNNDVIRIYKCLTYNQLPKNNDVIYNFMYKAD 202
Query: 148 KTTKAFSKISKK-GQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDT 206
T K + A+T T + K + + + TGRTHQIR L ++ PI+G+
Sbjct: 203 DNTMIVQNFKTKFNKTAITKYTYIDKYKKYFIYDIELLTGRTHQIRAVLNFLHAPIVGEQ 262
Query: 207 LY 208
Y
Sbjct: 263 KY 264
>gb|EAA09234.1| (AAAB01008898) agCP13979 [Anopheles gambiae str. PEST]
Length = 273
Score = 57.4 bits (137), Expect = 1e-07
Identities = 62/237 (26%), Positives = 114/237 (47%), Gaps = 31/237 (13%)
Query: 7 ILSVQENISHKKAKALIDSGLVSIGGKKLMVARK-ELPKNTHFSVQKVEKPSVIFEDENI 65
ILS+ E ++KK +D ++ G L++ +K +L N++ + +K + I
Sbjct: 9 ILSLCEGNNYKKKDETVD--VLYTSGNFLVINKKHDLLINSNDTKKKTV--------QTI 58
Query: 66 LALFKPPFIESYDLASFFKGWALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKE 125
+ P +++ F+ HRLD TSG+ L + N + + F+++ +K
Sbjct: 59 MRKQFPEYVQDNLTHDFY----FAHRLDFATSGI-LCIPLNKNACKEVCQVFEEQRARKY 113
Query: 126 YLALTQGIIE-EEREINAPI---LTFKTTKAF------SKISKKGQEAVTIITPLK--II 173
YLAL +G + +E I+ I + FK T ++ + + ++T + L
Sbjct: 114 YLALLRGHTDFDEEVIDIAIGEDVRFKDTSKKMCTILEDELCQNPRRSITKVLVLDRGYY 173
Query: 174 NKKTLLKVGIK--TGRTHQIRVHLKHINHPIIGDTLYNNE-PSLAKRLMLHAHKIAL 227
N K + KV ++ TGR HQ+R+H I H I+GD Y+ + + R+ LHA ++ L
Sbjct: 174 NGKPVTKVLLRPITGRRHQLRLHCSQIGHVIVGDYTYSLKIDTSPPRMFLHAFRLVL 230
>ref|NP_347651.1| (NC_003030) Pseudouridylate synthase [Clostridium acetobutylicum]
gb|AAK78991.1|AE007617_3 (AE007617) Pseudouridylate synthase [Clostridium acetobutylicum]
Length = 318
Score = 57.4 bits (137), Expect = 1e-07
Identities = 36/122 (29%), Positives = 67/122 (54%), Gaps = 5/122 (4%)
Query: 90 HRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEE---EREINAPILT 146
+RLD+ TSG+V+ K N E + ++R +KK Y AL +G I++ E I + +
Sbjct: 139 NRLDRNTSGIVIYGK-NFEALKCLNEMIRERRIKKYYYALVKGKIKDGIYEAYIKKDVSS 197
Query: 147 FKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDT 206
K+ + + + ++ I ++ + +++ + TGR+HQ+R HL H+ +PI+GD
Sbjct: 198 NKS-EIINTPAPGAKQISMEIKCVETCGTFSFIEIELLTGRSHQLRAHLSHLGNPILGDP 256
Query: 207 LY 208
Y
Sbjct: 257 KY 258
>ref|NP_073042.1| (NC_000908) conserved hypothetical protein [Mycoplasma genitalium]
sp|P47610|Y370_MYCGE Hypothetical protein MG370
pir||I64240 hypothetical protein homolog MG370 - Mycoplasma genitalium
gb|AAC71597.1| (U39719) conserved hypothetical protein [Mycoplasma genitalium]
Length = 323
Score = 55.5 bits (132), Expect = 5e-07
Identities = 60/222 (27%), Positives = 97/222 (43%), Gaps = 49/222 (22%)
Query: 45 NTHFSVQKV-EKPSVIFEDENILALFKPPFI-----------------------ESYDL- 79
N + S+ V +K +IFEDENI+ + KP I +D
Sbjct: 76 NDYLSLDLVKDKLKIIFEDENIIVVDKPTGIVCQPDKKHSIINLSNMLLKHCGYRQFDSN 135
Query: 80 -ASFFKGWALLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEE-- 136
+F+ +A HR+D+ TSG+V+ K N + K FK+ + K Y L G
Sbjct: 136 KLNFYPQFA--HRIDRNTSGIVIGAKTNKALK-ELNKVFKNNHLTKRYKGLVFGQFNHLG 192
Query: 137 ------EREINAPILTFKTTKAFSKISKKGQEAVTIITPLKIINKK--TLLKVGIKTGRT 188
+++ N I+T K K F + K T I +K +L+ + + +GRT
Sbjct: 193 LQTAYWKKDNNNGIVTVKW-KPFPEAKKIS----TFFENSSYIAQKDMSLITIRLISGRT 247
Query: 189 HQIRVHLKHINHPIIGDTLYN-----NEPSLAKRLMLHAHKI 225
HQIR L ++ ++GD Y+ N + K LHA+++
Sbjct: 248 HQIRACLNLFSNQLVGDKKYSLIQFKNRNNKYKHQALHAYEL 289
>ref|NP_602133.1| (NC_003450) COG0564:Pseudouridylate synthases, 23S RNA-specific
[Corynebacterium glutamicum]
dbj|BAC00339.1| (AP005283) Pseudouridylate synthases, 23S RNA-specific
[Corynebacterium glutamicum ATCC 13032]
Length = 322
Score = 55.5 bits (132), Expect = 5e-07
Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 49/194 (25%)
Query: 55 KPSVIFEDENILALFKPPFIESYDLASFFKGWALL--------------HRLDKETSGVV 100
K VI ED++IL + KPP++ + AL+ HRLD+ TSGV+
Sbjct: 94 KIHVIHEDDDILVIDKPPYLATMPRGRHITETALVKMRVLTGNNDLTPAHRLDRLTSGVL 153
Query: 101 LLVKENSEFHLKAKKAFKDRAVKKEYLALTQGI--------------IEEEREINAPILT 146
++VK+ E + F R K Y A+ + + IE+ER I +
Sbjct: 154 VMVKK-PELRGAYQTLFARREASKTYEAIAEFVPGLLDDGPAIWESRIEKERGIVQAFVV 212
Query: 147 FKTTKAFSKISKKGQEAVTIITPLKIINKKTLLKV------------GIKTGRTHQIRVH 194
A +++ +TP++ + L ++ TG+THQ+R+H
Sbjct: 213 EGPVNARTELVS--------VTPVEDAEQSILEEMHGPLPRQARYVLAPSTGKTHQLRIH 264
Query: 195 LKHINHPIIGDTLY 208
++ PI+GD LY
Sbjct: 265 MRDFAAPILGDPLY 278
>ref|NP_283855.1| (NC_003116) hypothetical protein NMA1085 [Neisseria meningitidis
Z2491]
pir||B81874 hypothetical protein NMA1085 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB84348.1| (AL162755) hypothetical protein NMA1085 [Neisseria meningitidis
Z2491]
Length = 307
Score = 54.7 bits (130), Expect = 9e-07
Identities = 54/218 (24%), Positives = 94/218 (42%), Gaps = 28/218 (12%)
Query: 34 KLMVARKELPKNTHFSVQKVEKPSVIFEDENILALFKPPFIESYDLASFFKGWAL----- 88
K+M +E + + + EK ++ DE+++ + KP F+ F + L
Sbjct: 75 KVMFYYRETSRESEPRIPFEEK--ILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRL 132
Query: 89 --------------LHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGII 134
LHRLDK+T+GV+LL N + F+++ V K Y AL
Sbjct: 133 RPELQHLNVEDITPLHRLDKDTAGVMLL-SHNPATRGAYQTMFQNKTVWKTYEALAPTRT 191
Query: 135 EEEREINAPILTFKTTKAFSKISKKGQ-EAVTIITPLKIINKKTLLKVGIKTGRTHQIRV 193
+ ++ + K F+ +G+ A T + ++ + +L ++ TG+ HQ+RV
Sbjct: 192 DLPYPLDVVSRLVRGEKFFTTQEAEGEPNAHTTVELIENRGEFSLYRLTPHTGKKHQLRV 251
Query: 194 HLKHINHPIIGDTLY-----NNEPSLAKRLMLHAHKIA 226
H+ + P++ D LY K L L A KIA
Sbjct: 252 HMMGLGMPLLNDALYPVPSEAGSEDYRKPLKLLAKKIA 289
>ref|NP_273908.1| (NC_003112) YabO/YceC/SfhB family protein [Neisseria meningitidis
MC58]
pir||C81148 YabO/YceC/SfhB family protein NMB0867 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF41278.1| (AE002439) YabO/YceC/SfhB family protein [Neisseria meningitidis
MC58]
Length = 307
Score = 53.5 bits (127), Expect = 2e-06
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 26/194 (13%)
Query: 58 VIFEDENILALFKPPFIESYDLASFFKGWAL-------------------LHRLDKETSG 98
++ DE+++ + KP F+ F + L LHRLDK+T+G
Sbjct: 97 ILHIDEHLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVEDITPLHRLDKDTAG 156
Query: 99 VVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKISK 158
V+LL N + F+++ V K Y AL + ++ + K F+
Sbjct: 157 VMLL-SHNPATRGAYQTMFQNKTVWKTYEALAPTRTDLPYPLDVVSRLVRGEKFFTTQEA 215
Query: 159 KGQ-EAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLY-----NNEP 212
+G+ A T + ++ + +L ++ TG+ HQ+RVH+ + P++ D LY
Sbjct: 216 EGEPNAHTTVELIENRGEFSLYRLTPHTGKKHQLRVHMMGLGMPLLNDALYPVPSEAGSE 275
Query: 213 SLAKRLMLHAHKIA 226
K L L A KIA
Sbjct: 276 DYRKPLKLLAKKIA 289
>ref|NP_440308.1| (NC_000911) hypothetical protein [Synechocystis sp. PCC 6803]
sp|P72970|YF92_SYNY3 Hypothetical protein slr1592
pir||S74948 hypothetical protein slr1592 - Synechocystis sp. (strain PCC 6803)
dbj|BAA16988.1| (D90902) ORF_ID:slr1592~hypothetical protein [Synechocystis sp. PCC
6803]
Length = 291
Score = 53.1 bits (126), Expect = 3e-06
Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 18/169 (10%)
Query: 57 SVIFEDENILALFKPPFIESYDLASFFKGWAL--------------LHRLDKETSGVVLL 102
SV+ DE++ A+ KP + F L LHRL TSG++LL
Sbjct: 62 SVLHRDEDLWAIDKPSGLPVLPGGDFVYHTVLEQLKIQYPQESLFPLHRLGTGTSGLLLL 121
Query: 103 VKENSEFHLKAKKAFKDRAVKKEYLALTQGI-IEEEREINAPI--LTFKTTKAFSKISKK 159
+ + + F++ +K Y + + E+ E + I + + S
Sbjct: 122 GRSTLG-RRELSRQFREHICRKIYRTVIGPCDLPEKFECHQAIGKIPYPQLGYIYAASSH 180
Query: 160 GQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLY 208
G+ A + L +KT L+V I+TGR HQIR+HL + +P++GD LY
Sbjct: 181 GKPAQSYGRILARSPEKTWLEVEIRTGRPHQIRIHLASLGYPLLGDRLY 229
>ref|XP_165571.1| (XM_165571) hypothetical protein FLJ14494 [Homo sapiens]
gb|AAH14131.1|AAH14131 (BC014131) hypothetical protein FLJ14494 [Homo sapiens]
Length = 377
Score = 53.1 bits (126), Expect = 3e-06
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 23/150 (15%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALT-------QGIIE---EE 137
L HRLDKET+GV++L + H + ++ F+ R V K+Y A+T G+++ E
Sbjct: 148 LCHRLDKETTGVMVLAWDKDMAH-QVQELFRTRQVVKKYWAITVHVPMPSAGVVDIPIVE 206
Query: 138 REINAPILTFKTTKAFS-----------KISKKGQEAVTIITPLKIINKKTLLKVGIKTG 186
+E K T + S + S+ Q AVT L L+++ TG
Sbjct: 207 KEAQGQQQHHKMTLSPSYRMDDGKMVKVRRSRNAQVAVTQYQVLSSTLSSALVELQPITG 266
Query: 187 RTHQIRVHLKH-INHPIIGDTLYNNEPSLA 215
HQ+RVHL ++ PI+GD Y++ LA
Sbjct: 267 IKHQLRVHLSFGLDCPILGDHKYSDWNRLA 296
>ref|NP_116184.1| (NM_032795) hypothetical protein FLJ14494 [Homo sapiens]
dbj|BAB55086.1| (AK027400) unnamed protein product [Homo sapiens]
Length = 377
Score = 53.1 bits (126), Expect = 3e-06
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 23/150 (15%)
Query: 88 LLHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALT-------QGIIE---EE 137
L HRLDKET+GV++L + H + ++ F+ R V K+Y A+T G+++ E
Sbjct: 148 LCHRLDKETTGVMVLAWDKDMAH-QVQELFRTRQVVKKYWAITVHVPMPSAGVVDIPIVE 206
Query: 138 REINAPILTFKTTKAFS-----------KISKKGQEAVTIITPLKIINKKTLLKVGIKTG 186
+E K T + S + S+ Q AVT L L+++ TG
Sbjct: 207 KEAQGQQQHHKMTLSPSYRMDDGKMVKVRRSRNAQVAVTQYQVLSSTLSSALVELQPITG 266
Query: 187 RTHQIRVHLKH-INHPIIGDTLYNNEPSLA 215
HQ+RVHL ++ PI+GD Y++ LA
Sbjct: 267 IKHQLRVHLSFGLDCPILGDHKYSDWNRLA 296
>gb|AAM33173.1| (AC117072) hypothetical protein [Dictyostelium discoideum]
Length = 316
Score = 52.8 bits (125), Expect = 3e-06
Identities = 35/90 (38%), Positives = 48/90 (52%), Gaps = 6/90 (6%)
Query: 144 ILTFKTTKAFSKISKKGQEAVTIITP--LKIINKK----TLLKVGIKTGRTHQIRVHLKH 197
I T T K S +K Q + ++ LKI N + T + + KTGR HQ+RVHL
Sbjct: 197 ITTTTTIKNKSNPAKASQTSYKVLERGYLKINNDEYIPITKVMLFPKTGRRHQLRVHLLS 256
Query: 198 INHPIIGDTLYNNEPSLAKRLMLHAHKIAL 227
I H I+GD Y + S R+MLH+ K+ L
Sbjct: 257 IGHVIVGDETYGPKDSTIHRMMLHSWKLIL 286
>ref|NP_337928.1| (NC_002755) RNA pseudouridylate synthase family protein
[Mycobacterium tuberculosis CDC1551]
gb|AAK47742.1| (AE007148) RNA pseudouridylate synthase family protein
[Mycobacterium tuberculosis CDC1551]
Length = 305
Score = 52.4 bits (124), Expect = 4e-06
Identities = 60/216 (27%), Positives = 92/216 (41%), Gaps = 36/216 (16%)
Query: 21 ALIDSGLVSIGGKKLMVARKELPKNTHFSVQKVEKPSVIFEDENILALFKPPFIESYDLA 80
A++DSG V G + + R +LP V+ +D +I+ + KP F+ +
Sbjct: 55 AVVDSGTVLPPGSVVHLYR-DLPDEVPVPFDV----PVLHQDADIVVVDKPHFLATMPRG 109
Query: 81 SFFKGWALL--------------HRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEY 126
AL+ HRLD+ T+GV+L E + F V+K Y
Sbjct: 110 RHVAQTALVRLRRELGLPELSPAHRLDRLTAGVLLFTTRR-EVRGSYQTMFARGLVRKTY 168
Query: 127 LALTQGIIEEEREINAPILTFKTTKAFSKISKKGQ-EAV------TIITPLKIINKKTLL 179
LA R AP L + ++G +AV T ++ I + L
Sbjct: 169 LA---------RAPVAPGLALPRLVRSRIVKRRGHLQAVCEPGVPNAETLVERIARDGLY 219
Query: 180 KVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLA 215
++ TGRTHQ+RVH+ + PI+GD LY N S+A
Sbjct: 220 RLTPTTGRTHQLRVHMAALGIPIMGDPLYPNVISVA 255
>ref|NP_217817.1| (NC_000962) hypothetical protein Rv3300c [Mycobacterium
tuberculosis H37Rv]
pir||F70533 probable deaminase - Mycobacterium tuberculosis (strain H37RV)
emb|CAB09445.1| (Z96070) hypothetical protein Rv3300c [Mycobacterium tuberculosis
H37Rv]
Length = 305
Score = 52.4 bits (124), Expect = 4e-06
Identities = 60/216 (27%), Positives = 92/216 (41%), Gaps = 36/216 (16%)
Query: 21 ALIDSGLVSIGGKKLMVARKELPKNTHFSVQKVEKPSVIFEDENILALFKPPFIESYDLA 80
A++DSG V G + + R +LP V+ +D +I+ + KP F+ +
Sbjct: 55 AVVDSGTVLPPGSVVHLYR-DLPDEVPVPFDV----PVLHQDADIVVVDKPHFLATMPRG 109
Query: 81 SFFKGWALL--------------HRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEY 126
AL+ HRLD+ T+GV+L E + F V+K Y
Sbjct: 110 RHVAQTALVRLRRELGLPELSPAHRLDRLTAGVLLFTTRR-EVRGSYQTMFARGLVRKTY 168
Query: 127 LALTQGIIEEEREINAPILTFKTTKAFSKISKKGQ-EAV------TIITPLKIINKKTLL 179
LA R AP L + ++G +AV T ++ I + L
Sbjct: 169 LA---------RAPVAPGLALPRLVRSRIVKRRGHLQAVCEPGVPNAETLVERIARDGLY 219
Query: 180 KVGIKTGRTHQIRVHLKHINHPIIGDTLYNNEPSLA 215
++ TGRTHQ+RVH+ + PI+GD LY N S+A
Sbjct: 220 RLTPTTGRTHQLRVHMAALGIPIMGDPLYPNVISVA 255
>ref|NP_176031.1| (NM_104514) RNA pseudouridylate synthase, putative [Arabidopsis
thaliana]
gb|AAG50905.1|AC069159_6 (AC069159) RNA pseudouridylate synthase, putative [Arabidopsis
thaliana]
Length = 254
Score = 51.2 bits (121), Expect = 1e-05
Identities = 43/204 (21%), Positives = 85/204 (41%), Gaps = 44/204 (21%)
Query: 49 SVQKVEKPSVIFEDENILALFKPPFIESYDLASFFKGWALLHRLDKETSGVVLLVKENSE 108
S+ + + +++EDE ++A+ KP + + L +RLD++TSGV+++ K + +
Sbjct: 8 SLFNLTRDDILYEDEYLMAVNKPKGVYCEAVLRSAPQIVLANRLDRDTSGVMIITKSH-K 66
Query: 109 FHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAP------------------------- 143
K KAF + ++K Y+AL G R +
Sbjct: 67 VAAKLVKAFTEHKIRKSYIALCIGSSPNWRRVTVSSGHGRSKHGAWRVYAALDVGRVLPG 126
Query: 144 ---ILTFKTTKAFSKISKKGQEAVTIITPLKII---------------NKKTLLKVGIKT 185
+ +TT ++ E+ + +I + +++ ++
Sbjct: 127 GSFVRDMETTFEVVSVNSVKNESCELEDVNHVIVAEGERELSCGGDDDDVVVVVRAFPRS 186
Query: 186 GRTHQIRVHLKHINHPIIGDTLYN 209
GRTHQIR+H +++ PI GD Y+
Sbjct: 187 GRTHQIRLHCQYLGIPIRGDVKYH 210
>ref|NP_439586.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
pir||I64029 hypothetical protein HI1435 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC23084.1| (U32822) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 182
Score = 50.8 bits (120), Expect = 1e-05
Identities = 31/87 (35%), Positives = 51/87 (57%), Gaps = 3/87 (3%)
Query: 89 LHRLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAP--ILT 146
+HRLD+ TSGV+L + +L ++ F+ + V+K YLA+ +G ++ + I+ P I
Sbjct: 50 IHRLDRPTSGVLLFALSSEIANLMCEQ-FEQKYVQKSYLAVVRGYLQGKERIDYPLKIQL 108
Query: 147 FKTTKAFSKISKKGQEAVTIITPLKII 173
K FS+ K+ QEA+T LKI+
Sbjct: 109 DKIADKFSQEDKEPQEAITDYEGLKIV 135
>ref|NP_473106.1| (NC_000910) pseudouridine synthetase (RsuA fam.); 1st euk. member
(OO) [Plasmodium falciparum]
pir||C71603 pseudouridine synthetase (RsuA fam.) PFB0890c - malaria parasite
(Plasmodium falciparum)
gb|AAC71967.1| (AE001423) pseudouridine synthetase (RsuA fam.); 1st euk. member
(OO) [Plasmodium falciparum 3D7]
Length = 338
Score = 50.1 bits (118), Expect = 2e-05
Identities = 69/259 (26%), Positives = 100/259 (37%), Gaps = 68/259 (26%)
Query: 6 KILSVQENISHKKAKALIDSGLVSIGGK--------------KLMVARKELPKNTHFSVQ 51
K++S++ NIS +K+ I G V I K L + K++ ++
Sbjct: 50 KLISMKRNISRRKSDEFIKDGKVKINNKIITNPGTHVHIGKDSLRIYDKKIKLTNIINMI 109
Query: 52 K-----------VEKPSVIFEDEN-------ILALFKPPFIESYDLASFFKGWALLHRLD 93
K + KP + N I LF ++ Y L + + RLD
Sbjct: 110 KQNENKLHKWIVLHKPKGLLCTSNDEKNRKSIYTLFPEEMLQKYRLVT-------VGRLD 162
Query: 94 KETSGVVLLVKE----NSEFHLKAKKAFKDRA-----VKKEYLA-LTQGIIEEEREINAP 143
+ TSGV+LL + N H K ++ R VK L L +GI EE E P
Sbjct: 163 RNTSGVLLLTNDYAWVNKLTHPKYQRIRTYRVHIEGPVKMNALKELARGIYLEEDEKTQP 222
Query: 144 ILTF-------------KTTKAFSKISKKGQEA-VTIITPLKI-----INKKTLLKVGIK 184
+ K K SK+ KK A + I+ KI K T+L + IK
Sbjct: 223 KKIYNYKESREKSNIDDKKKKKMSKMKKKTNPAFIEILREEKIKIKEDTKKITVLNISIK 282
Query: 185 TGRTHQIRVHLKHINHPII 203
GR QIR + IN P+I
Sbjct: 283 EGRNRQIRKMFQQINQPVI 301
>gb|AAL47436.1| (AY069882) AT3g52260/T25B15_30 [Arabidopsis thaliana]
Length = 294
Score = 48.9 bits (115), Expect = 5e-05
Identities = 55/218 (25%), Positives = 98/218 (44%), Gaps = 53/218 (24%)
Query: 32 GKKLMVARKELPK-NTHFSVQKVEKPSVIFEDENILALFKPPFIESYDLASFFKGWAL-- 88
G KL+ +R + +T +S++ V++ED++++AL KP ++ F + L
Sbjct: 78 GSKLVYSRLPWKEPDTPYSLE------VLYEDDDLIALNKPSGLQVLPGGLFQQRTVLTQ 131
Query: 89 ----------------------LHRLDKETSGVVLLVKEN-SEFHLKA------------ 113
+HRL + TSG++L K ++ L A
Sbjct: 132 LQWCFGKNDSYIGSRESPHPVPVHRLGRGTSGILLCAKTKLAKTKLAAYFAEGTSLVGSG 191
Query: 114 ---KKAFKDRAVKKEYLALTQGIIEEERE-INAPILTFK---TTKAFSKISKKGQEAVTI 166
++ R + K Y AL GI+EE+ I PI + + S + + A +
Sbjct: 192 NLDQECGTGRKLSKIYRALADGIVEEDEVVIKQPIGVVRYPGVAQGLYVASPEWKPAFSK 251
Query: 167 ITPLKIINKK--TLLKVGIKTGRTHQIRVHLKHINHPI 202
+ L+ +K +L+KV I++GR HQIR+HL ++ HP+
Sbjct: 252 VFVLERDREKNCSLVKVEIQSGRPHQIRIHLAYMGHPL 289
>ref|NP_224603.1| (NC_000922) predicted pseudouridine synthetase family
[Chlamydophila pneumoniae CWL029]
ref|NP_300460.1| (NC_002491) pseudouridine synthetase family [Chlamydophila
pneumoniae J138]
pir||B72082 probable pseudouridine synthetase family - Chlamydophila pneumoniae
(strain CWL029)
gb|AAD18547.1| (AE001624) predicted pseudouridine synthetase family [Chlamydophila
pneumoniae CWL029]
dbj|BAA98611.1| (AP002546) pseudouridine synthetase family [Chlamydophila
pneumoniae J138]
Length = 232
Score = 48.5 bits (114), Expect = 6e-05
Identities = 26/79 (32%), Positives = 47/79 (58%), Gaps = 2/79 (2%)
Query: 54 EKPSVIFEDENILALFKPPFIESYDLASFFKGWALLHRLDKETSGVVLLVKENSEFHLKA 113
++PS+++ED+ + KPP + + +A + + +HRLDK TSG +L+ K + + +
Sbjct: 83 QQPSILWEDDYSIIYEKPPHLTTEQMAHMTR-FFTVHRLDKGTSGCLLMGK-SKQAATEL 140
Query: 114 KKAFKDRAVKKEYLALTQG 132
K FK R + K+Y+A G
Sbjct: 141 MKLFKQRKIHKQYIAFVFG 159
>gb|AAB07777.1| (U67934) 44.9 kDa protein C18B11 homolog [Homo sapiens]
Length = 189
Score = 48.5 bits (114), Expect = 6e-05
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 156 ISKKGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYNN 210
+ +G+ T+ L + ++++ TGRTHQIRVHL+ + HPI+ D +YN+
Sbjct: 4 VDPRGKPCETVFQRLSYNGQSSVVRCRPLTGRTHQIRVHLQFLGHPILNDPIYNS 58
>ref|NP_625900.1| (NC_003888) putative ribosomal pseudouridine synthase [Streptomyces
coelicolor A3(2)]
emb|CAB59478.1| (AL132648) putative ribosomal pseudouridine synthase [Streptomyces
coelicolor A3(2)]
Length = 324
Score = 48.1 bits (113), Expect = 8e-05
Identities = 47/169 (27%), Positives = 75/169 (43%), Gaps = 20/169 (11%)
Query: 58 VIFEDENILALFKPPFIESYDLASFFKGWALL--------------HRLDKETSGVVLLV 103
+++ D +I+ KP F+ + AL HRLD+ T+G+VL
Sbjct: 97 IVYRDAHIVVADKPHFLATTPRGGHVTQTALARLRRELDIPALGAAHRLDRLTAGLVLFT 156
Query: 104 KENSEFHLKAKKAFKDRAVKKEYLALT--QGIIEEEREINAPILTFKTTKAFSKISKKGQ 161
E + F DR V K Y A+ + R + + IL + A +++ +
Sbjct: 157 VRPGE-RGAYQGLFADRRVHKVYEAVAPYDAALALPRTVRSRILKERGVLAAREVAGE-P 214
Query: 162 EAVTIITPLKIINKKTLLKVGIK--TGRTHQIRVHLKHINHPIIGDTLY 208
AVT + L + L + + TG+THQ+RVHL + PI+GD LY
Sbjct: 215 NAVTRVELLAHRPEHGLGRYRLVPGTGQTHQLRVHLNALGVPILGDPLY 263
>gb|AAG51501.1|AC058785_4 (AC058785) unknown protein [Arabidopsis thaliana]
Length = 293
Score = 48.1 bits (113), Expect = 8e-05
Identities = 44/222 (19%), Positives = 91/222 (40%), Gaps = 52/222 (23%)
Query: 39 RKELPKNTHFSVQKVEKPSVIFEDENILALFKPPFI--------ESYDLASFFKGWALLH 90
R+ + ++ S+ + + +++EDE ++A+ KP + + + L +
Sbjct: 29 RRAMEASSKSSLFNLTRDDILYEDEYLMAVNKPKGVYCEAVLRSAPQIVLDSSSEYHLAN 88
Query: 91 RLDKETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAP------- 143
RLD++TSGV+++ K + + K KAF + ++K Y+AL G R +
Sbjct: 89 RLDRDTSGVMIITKSH-KVAAKLVKAFTEHKIRKSYIALCIGSSPNWRRVTVSSGHGRSK 147
Query: 144 ---------------------ILTFKTTKAFSKISKKGQEAVTIITPLKII--------- 173
+ +TT ++ E+ + +I
Sbjct: 148 HGAWRVYAALDVGRVLPGGSFVRDMETTFEVVSVNSVKNESCELEDVNHVIVAEGERELS 207
Query: 174 ------NKKTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLYN 209
+ +++ ++GRTHQIR+H +++ PI GD Y+
Sbjct: 208 CGGDDDDVVVVVRAFPRSGRTHQIRLHCQYLGIPIRGDVKYH 249
>ref|NP_110237.1| (NC_000912) pseudouridine synthase [Mycoplasma pneumoniae]
sp|P75230|Y370_MYCPN Hypothetical protein MG370 homolog (G12_orf326)
pir||S73620 hypothetical protein G12_orf326 - Mycoplasma pneumoniae (strain
ATCC 29342)
gb|AAB95942.1| (AE000027) pseudouridine synthase [Mycoplasma pneumoniae]
Length = 326
Score = 46.6 bits (109), Expect = 2e-04
Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 33/181 (18%)
Query: 58 VIFEDENILALFKPPFI--------ESYDLAS----------FFKGWA-----LLHRLDK 94
VIFEDE ++ + KP + E ++LA+ +FK HR+D+
Sbjct: 89 VIFEDEQLIVVDKPAGVVCQPDAKHELFNLANSLLKHCGYNQYFKNSLSFIPRFAHRIDR 148
Query: 95 ETSGVVLLVKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINA-----PILTFKT 149
T G+V+ K N + + F+ + K+Y L G + A T
Sbjct: 149 NTCGLVIGAKTNQALQ-ELEAVFRHNLLMKQYQGLVFGPFNFKGTQKAYWAKDAYQALVT 207
Query: 150 TKAFSKISKKGQEAVTIITPLKIINKK--TLLKVGIKTGRTHQIRVHLKHINHPIIGDTL 207
KA K + TI K + K +LL + + +G+THQIR L +N ++GD
Sbjct: 208 VKA--KPFPNAKPITTIFENSKYLTKLDLSLLTIRLVSGKTHQIRACLNLLNTQLVGDRK 265
Query: 208 Y 208
Y
Sbjct: 266 Y 266
>ref|NP_372017.1| (NC_002758) ribosomal large subunit pseudouridine synthase B
[Staphylococcus aureus subsp. aureus Mu50]
ref|NP_374607.1| (NC_002745) ribosomal large subunit pseudouridine synthase B
[Staphylococcus aureus subsp. aureus N315]
ref|NP_646264.1| (NC_003923) ribosomal large subunit pseudouridine synthase B
[Staphylococcus aureus subsp. aureus MW2]
dbj|BAB42586.1| (AP003134) ribosomal large subunit pseudouridine synthase B
[Staphylococcus aureus subsp. aureus N315]
dbj|BAB57655.1| (AP003362) ribosomal large subunit pseudouridine synthase B
[Staphylococcus aureus subsp. aureus Mu50]
dbj|BAB95312.1| (AP004827) ribosomal large subunit pseudouridine synthase B
[Staphylococcus aureus subsp. aureus MW2]
Length = 245
Score = 46.6 bits (109), Expect = 2e-04
Identities = 53/219 (24%), Positives = 94/219 (42%), Gaps = 35/219 (15%)
Query: 1 MEKAYKILSVQENISHKKAKALIDSGLVSIGGKKLM-VARKELPKNTHFSVQKVEKPSVI 59
+E+ K ++ S +KA+ LI G V + G + + K P +T +VE +
Sbjct: 5 LERLQKRIANSGYTSRRKAETLISEGKVKVNGTTVTELGTKVKPSDTI----EVEGIKIE 60
Query: 60 FEDENILALFKPPFI---ESYD-----LASFFKGWAL----LHRLDKETSGVVLLVKENS 107
ED+ + KP + S D + +FK + RLD +TSG++LL +
Sbjct: 61 LEDKIYILFHKPTQVITSVSDDRGRTVVTDYFKDIEARIYPVGRLDYDTSGLLLLTNDGE 120
Query: 108 EFHLKAKKAFKDRAVKKEYLALTQGIIEEER----EINAPILTFKTTKAFSKISKKGQEA 163
+L ++ +KK+Y+A +G + E E + T A K+ K+ ++
Sbjct: 121 FTNLMTHPRYQ---IKKKYVAKLKGYLMREEVKALEKGIELEDGMTQPAEVKVKKQDKDK 177
Query: 164 VTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPI 202
T TL+++ I GR Q+R +H H +
Sbjct: 178 NT-----------TLVEITITEGRNRQVRRMFEHFGHQV 205
>ref|NP_644614.1| (NC_003919) pseudouridylate synthase [Xanthomonas axonopodis pv.
citri str. 306]
gb|AAM39150.1| (AE012085) pseudouridylate synthase [Xanthomonas axonopodis pv.
citri str. 306]
Length = 298
Score = 46.2 bits (108), Expect = 3e-04
Identities = 45/201 (22%), Positives = 80/201 (39%), Gaps = 43/201 (21%)
Query: 57 SVIFEDENILALFKPPFIESYDLASFFKGWAL--------------LHRLDKETSGVVLL 102
+V+ D ++ KP F+ ++ + L LHR+D+ET+G+VL
Sbjct: 88 TVVHADAQLVVACKPHFLPVAPAGAYVRETLLTRLVRRLDNPALVPLHRIDRETAGLVLF 147
Query: 103 VKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKISKKGQE 162
N + F++R ++K YLA+ AP+ + + G+
Sbjct: 148 -SANPATRGIYQALFRERRIRKHYLAVA-----------APLPELRFPYVHRSRLEPGEP 195
Query: 163 AVTIITPLKIINKKTLLKVGIK------------TGRTHQIRVHLKHINHPIIGDTLY-- 208
+ + N +T+++V + TGR HQ+RVH+ + PI+ D Y
Sbjct: 196 FFRMREGVGEPNSETVIEVVARNADTWTYRLEPVTGRKHQLRVHMAALGAPILHDRFYPA 255
Query: 209 ---NNEPSLAKRLMLHAHKIA 226
+ L L AH +A
Sbjct: 256 LEAQRPDDPGRPLQLFAHTLA 276
>gb|AAG24942.1|AF128845_1 (AF128845) RluD [Sinorhizobium meliloti]
Length = 163
Score = 45.4 bits (106), Expect = 5e-04
Identities = 18/26 (69%), Positives = 22/26 (84%)
Query: 183 IKTGRTHQIRVHLKHINHPIIGDTLY 208
++TGRTHQIRVH+ HI HP+IGD Y
Sbjct: 73 LETGRTHQIRVHMAHIGHPLIGDPDY 98
>ref|NP_639523.1| (NC_003902) pseudouridylate synthase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gb|AAM43405.1| (AE012545) pseudouridylate synthase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
Length = 298
Score = 45.4 bits (106), Expect = 5e-04
Identities = 50/201 (24%), Positives = 85/201 (41%), Gaps = 43/201 (21%)
Query: 57 SVIFEDENILALFKPPFIESYDLASFFKGWAL--------------LHRLDKETSGVVLL 102
+V+ D I+ KP F+ ++ + L LHR+D++T+G+VL
Sbjct: 88 TVVHADGQIVVACKPHFLPVVPAGAYVRETLLARLVRRFDNPSLVPLHRIDRDTAGLVLF 147
Query: 103 VKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKISKKGQE 162
N + F++R + K YLA+ + P LTF S++ + G+
Sbjct: 148 -SANPATRGIYQALFRERRIHKHYLAVAPPL---------PALTFPYVHR-SRL-EPGEP 195
Query: 163 AVTIITPLKIINKKTLLKVGIK------------TGRTHQIRVHLKHINHPIIGDTLY-- 208
+ + N +T++ V + TGR HQ+RVH+ + PI+ D Y
Sbjct: 196 FFRMREGVGEPNSETVIDVVARGADMWTYRLEPVTGRKHQLRVHMAALGVPILHDRFYPE 255
Query: 209 --NNEPSLAKR-LMLHAHKIA 226
+ P +R L L AH +A
Sbjct: 256 LEDQRPDDPERPLQLFAHMLA 276
>dbj|BAB26589.1| (AK009926) data source:SPTR, source key:Q9UJJ7,
evidence:ISS~homolog to C321D2.1 (RIBOSOMAL LARGE
SUBUNIT PSEUDOURIDINE SYNTHASE (EC 4.2.1.70,
PSEUDOURIDYLATE SYNTHASE, URACIL HYDROLASE) LIKE
PROTEIN)~putative [Mus musculus]
Length = 177
Score = 45.4 bits (106), Expect = 5e-04
Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 176 KTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLY---NNEPSLAKRLMLHAH--KIALLGY 230
K LLK TGRTHQ+RVH + HPI+GD Y ++ R+MLHA +I
Sbjct: 34 KVLLKP--LTGRTHQLRVHCSALGHPIVGDLTYGQAEDQEDQPFRMMLHAFYLRIPTQAE 91
Query: 231 EFEAIAPKEF 240
EA P F
Sbjct: 92 RVEACTPDPF 101
>ref|NP_188575.1| (NM_112831) unknown protein [Arabidopsis thaliana]
dbj|BAB02469.1| (AB025624) contains similarity to unknown
protein~gb|AAC83020.1~gene_id:MLD14.18 [Arabidopsis
thaliana]
Length = 477
Score = 45.1 bits (105), Expect = 7e-04
Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 24/145 (16%)
Query: 88 LLHRLDKETSGVVLLVKE-------NSEFHLKAKKAF------KDRAVKKEYLALTQGII 134
L+HRLD++ SG+++L + +S F K A +++K++Y+AL G
Sbjct: 231 LVHRLDRDCSGLLVLARTQTAATVLHSIFREKTTGASAYGVKKNVKSLKRKYMALVIGCP 290
Query: 135 EEER-EINAPILTFKTTKAFSK---ISKKGQEAVT--IITPLKIINKK----TLLKVGIK 184
+R +I+AP+ S+ ++ G+ T IT ++I T L++
Sbjct: 291 PRQRGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPL 350
Query: 185 TGRTHQIRVHLKHI-NHPIIGDTLY 208
TGR HQ+RVH + PI+GD Y
Sbjct: 351 TGRKHQLRVHCAEVLGTPIVGDYKY 375
>emb|CAC00347.2| (AL160371) possible hypothetical 46.8 Kd protein in clc1-pds2
intergenic region [Leishmania major]
Length = 1067
Score = 43.1 bits (100), Expect = 0.003
Identities = 24/69 (34%), Positives = 41/69 (58%), Gaps = 9/69 (13%)
Query: 149 TTKAFSKISKKGQEAVTII----TPLKIIN-----KKTLLKVGIKTGRTHQIRVHLKHIN 199
T A S S++ Q+ + + T L++++ +T++K + TGRTHQ+RVHL +
Sbjct: 880 TLPALSDSSRRVQQYLETLRSAQTALQVMHYDAATDQTVVKCTLGTGRTHQLRVHLASLG 939
Query: 200 HPIIGDTLY 208
HPI+ D+ Y
Sbjct: 940 HPIVHDSKY 948
>gb|AAH12951.1|AAH12951 (BC012951) Unknown (protein for IMAGE:3853655) [Homo sapiens]
Length = 194
Score = 42.7 bits (99), Expect = 0.003
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 176 KTLLKVGIKTGRTHQIRVHLKHINHPIIGDTLY---NNEPSLAKRLMLHA 222
K LLK TGRTHQ+RVH + HP++GD Y + R+MLHA
Sbjct: 45 KVLLKP--LTGRTHQLRVHCSALGHPVVGDLTYGEVSGREDRPFRMMLHA 92
>ref|NP_390197.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
sp|P35159|RLUB_BACSU Ribosomal large subunit pseudouridine synthase B (Pseudouridylate
synthase) (Uracil hydrolyase)
pir||S45555 conserved hypothetical protein ypuL - Bacillus subtilis
gb|AAA67493.1| (L09228) ORFX13 [Bacillus subtilis]
emb|CAB14248.1| (Z99116) similar to hypothetical proteins [Bacillus subtilis]
Length = 229
Score = 42.4 bits (98), Expect = 0.004
Identities = 54/218 (24%), Positives = 91/218 (40%), Gaps = 31/218 (14%)
Query: 1 MEKAYKILSVQENISHKKAKALIDSGLVSIGGKKLMVARKELPKNTHFSVQ--KVEKPSV 58
ME+ K+++ S KA+ LI G V + GK + ++ + V KVE+
Sbjct: 1 MERLQKVIAHAGVASRSKAEELIKEGKVKVNGKVVTELGVKVTGSDQIEVNGLKVEREEP 60
Query: 59 IFEDENILALFKPPFIESYD--------LASFFKGWAL----LHRLDKETSGVVLLVKEN 106
++ L+KP + S + FFK + RLD +TSG++LL +
Sbjct: 61 VY-----FLLYKPRGVISAAQDDKGRKVVTDFFKNIPQRIYPIGRLDYDTSGLLLLTND- 114
Query: 107 SEFHLKAKKAFKDR-AVKKEYLALTQGIIEEEREINAPILTFKTTKAFSKISKKGQEAVT 165
EF A K + + K Y+A +GI +E L K + K A
Sbjct: 115 GEF---ANKLMHPKYEIDKTYVAKVKGIPPKE-------LLRKLERGIRLEEGKTAPAKA 164
Query: 166 IITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHPII 203
+ L + +++++ I GR Q+R + I H +I
Sbjct: 165 KLLSLDKKKQTSIIQLTIHEGRNRQVRRMFEAIGHEVI 202
>gb|AAC69259.1| (AF025970) hypothetical protein [Helicobacter pylori]
Length = 83
Score = 42.0 bits (97), Expect = 0.006
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 23/70 (32%)
Query: 180 KVGIKTGRTHQIRVHLKHINHPIIGDTLY----------------NNEPSLAKRLMLHAH 223
K+ TGRTHQIR+HL ++H I+G+ LY NN P+ LMLHA
Sbjct: 1 KITPLTGRTHQIRLHLSSVDHRIVGEGLYGVADENAREYLQLKRENNAPT----LMLHA- 55
Query: 224 KIALLGYEFE 233
A L +EF+
Sbjct: 56 --ASLEFEFK 63
>ref|NP_405754.1| (NC_003143) putative RNA pseudouridylate synthase-family protein
[Yersinia pestis]
emb|CAC91019.1| (AJ414151) putative RNA pseudouridylate synthase-family protein
[Yersinia pestis]
Length = 318
Score = 41.6 bits (96), Expect = 0.008
Identities = 58/227 (25%), Positives = 98/227 (42%), Gaps = 35/227 (15%)
Query: 2 EKAYKILSVQENISHKKAKALIDSGLVSIGGKKLMVA-RKELPKNTHFSVQKVEKPSVIF 60
EK KIL+ + S ++ +A+I G VS+ GK + R E+ ++T + S+
Sbjct: 3 EKLQKILARAGHGSRREIEAIIQQGRVSVDGKVSKLGDRVEVTQSTKIRLDG-HLLSIKE 61
Query: 61 EDEN---ILALFKP-------------PFIESYDLASFFKG--WALLHRLDKETSGVVLL 102
+EN +LA +KP P + +D +G W + RLD TSG++L
Sbjct: 62 SEENVCRVLAYYKPEGELCTRNDPEGRPTV--FDRLPKLRGSRWVAVGRLDVNTSGLLLF 119
Query: 103 VKENSEFHLKAKKAFKDRAVKKEYLALTQGIIEEE--REINAPILTFKTTKAFSKISKKG 160
+ L + R V++EY G I+++ ++++ + AF IS +G
Sbjct: 120 TTDG---ELANRLMHPSREVEREYAVRVFGQIDDDKIKQLSRGVQLEDGPAAFRTISYQG 176
Query: 161 QEA------VTIITPLKIINKKTLLKVGIKTGRTHQIRVHLKHINHP 201
E VT+ ++ VG++ R IRV IN P
Sbjct: 177 GEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRL--IRVRYGDINLP 221
>gb|AAL79727.1|AC091774_18 (AC091774) putative ribosomal large subunit pseudouridine synthase
[Oryza sativa]
Length = 275
Score = 41.2 bits (95), Expect = 0.010
Identities = 33/150 (22%), Positives = 67/150 (44%), Gaps = 32/150 (21%)
Query: 14 ISHKKAKALIDSGLVSIGGKKL-----MVARKELPKNTHFSVQKVEKP------SVIFED 62
+S + +A I +GLV + G+ + MV ++ T +Q + +++ED
Sbjct: 87 VSRARIQASIRAGLVVVNGRPVSKVSHMVKGGDIVSCTVLELQPLRAEPEDIPLDIVYED 146
Query: 63 ENILALFKPPFIESYDLASFFKGW--------------------ALLHRLDKETSGVVLL 102
+++L + KP + + G ++HRLDK TSG++++
Sbjct: 147 DHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTSLVRPGIVHRLDKGTSGLLVV 206
Query: 103 VKENSEFHLKAKKAFKDRAVKKEYLALTQG 132
K+ H + + FK +++ Y++LT G
Sbjct: 207 AKDEHS-HAQLAEQFKLHTIRRVYISLTCG 235
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.318 0.136 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,492,508
Number of Sequences: 1026957
Number of extensions: 5714497
Number of successful extensions: 15037
Number of sequences better than 1.0e-02: 230
Number of HSP's better than 0.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 14458
Number of HSP's gapped (non-prelim): 252
length of query: 242
length of database: 324,149,939
effective HSP length: 118
effective length of query: 124
effective length of database: 202,969,013
effective search space: 25168157612
effective search space used: 25168157612
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 95 (41.2 bits)