BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645575|ref|NP_207751.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(243 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207751.1| (NC_000915) conserved hypothetical protein... 475 e-133
ref|NP_223611.1| (NC_000921) putative [Helicobacter pylori ... 444 e-124
ref|NP_281877.1| (NC_002163) hypothetical protein Cj0705 [C... 175 4e-43
ref|NP_604213.1| (NC_003454) NGG1-interacting factor 3 [Fus... 107 1e-22
ref|NP_562920.1| (NC_003366) conserved hypothetical protein... 99 4e-20
ref|NP_347934.1| (NC_003030) Uncharacterized protein of Ybg... 98 7e-20
ref|NP_267229.1| (NC_002662) HYPOTHETICAL PROTEIN [Lactococ... 89 5e-17
gb|EAA00104.1| (AAAB01008986) agCP10051 [Anopheles gambiae ... 87 2e-16
ref|NP_487256.1| (NC_003272) hypothetical protein [Nostoc s... 76 3e-13
ref|NP_247922.1| (NC_000909) conserved hypothetical protein... 76 4e-13
sp|Q58337|Y927_METJA Hypothetical protein MJ0927 76 4e-13
emb|CAA71301.1| (Y10251) unknown protein [Methanopyrus kand... 75 5e-13
ref|NP_646328.1| (NC_003923) conserved hypothetical protein... 75 5e-13
ref|NP_613302.1| (NC_003551) Uncharacterized conserved prot... 75 5e-13
emb|CAB72937.1| (AJ243321) hypothetical protein [Lactobacil... 73 2e-12
ref|NP_372083.1| (NC_002758) conserved hypothetical protein... 73 3e-12
ref|NP_623343.1| (NC_003869) conserved hypothetical protein... 70 2e-11
dbj|BAA11246.1| (D78182) ORF4 [Streptococcus mutans] 68 8e-11
ref|NP_269125.1| (NC_002737) conserved hypothetical protein... 67 1e-10
ref|NP_609790.1| (NM_135946) CG4278 gene product [Drosophil... 67 1e-10
gb|AAF53525.1| (AE003650) CG4278 gene product [Drosophila m... 67 1e-10
ref|NP_212602.1| (NC_001318) conserved hypothetical protein... 67 1e-10
ref|NP_359055.1| (NC_003098) Conserved hypothetical protein... 66 4e-10
ref|NP_346053.1| (NC_003028) conserved hypothetical protein... 65 5e-10
ref|NP_626549.1| (NC_003888) conserved hypothetical protein... 64 1e-09
ref|NP_614475.1| (NC_003551) Uncharacterized conserved prot... 63 2e-09
ref|NP_011294.1| (NC_001139) similar to Listeria monocytoge... 63 3e-09
ref|NP_658320.1| (NC_003995) DUF34, Domain of unknown funct... 61 1e-08
ref|NP_588455.1| (NC_003421) similar to yeast ngg1-interact... 59 5e-08
ref|NP_326287.1| (NC_002771) conserved hypothetical protein... 58 8e-08
ref|NP_242246.1| (NC_002570) BH1380~unknown conserved prote... 58 8e-08
ref|NP_216746.1| (NC_000962) hypothetical protein Rv2230c [... 57 2e-07
ref|NP_617727.1| (NC_003552) conserved hypothetical protein... 55 9e-07
ref|NP_464977.1| (NC_003210) conserved hypothetical protein... 54 1e-06
ref|NP_470825.1| (NC_003212) conserved hypothetical protein... 54 1e-06
ref|NP_634742.1| (NC_003901) hypothetical protein [Methanos... 54 2e-06
ref|NP_302129.1| (NC_002677) conserved hypothetical protein... 53 3e-06
ref|NP_601440.1| (NC_003450) COG0327:Uncharacterized ACR [C... 51 1e-05
ref|NP_390396.1| (NC_000964) similar to hypothetical protei... 50 2e-05
ref|NP_078185.1| (NC_002162) conserved hypothetical [Ureapl... 50 2e-05
ref|NP_585938.1| (NC_003234) similarity to NGG1-INTERACTING... 50 2e-05
dbj|BAA12492.1| (D84432) YqfO [Bacillus subtilis] 50 2e-05
ref|NP_068596.1| (NM_021824) NIF3 (Ngg1 interacting factor ... 49 5e-05
sp|Q9GZT8|NF3L_HUMAN NIF3-like protein 1 (Amyotrophic later... 49 5e-05
ref|XP_027963.1| (XM_027963) amyotrophic lateral sclerosis ... 49 5e-05
sp|Q9EQ80|NF3L_MOUSE NIF3-like protein 1 47 1e-04
ref|NP_075364.1| (NM_022988) Ngg1 interacting factor 3-like... 47 1e-04
dbj|BAB27769.1| (AK011670) data source:SPTR, source key:Q9E... 47 1e-04
gb|AAA87434.1| (U19364) unknown [Methanothermobacter therma... 47 1e-04
dbj|BAB23102.1| (AK003978) data source:SPTR, source key:Q9E... 47 1e-04
ref|NP_296762.1| (NC_002620) conserved hypothetical protein... 44 0.002
>ref|NP_207751.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
sp|O25613|Y959_HELPY Hypothetical protein HP0959
pir||G64639 conserved hypothetical protein HP0959 - Helicobacter pylori
(strain 26695)
gb|AAD08001.1| (AE000604) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 243
Score = 475 bits (1222), Expect = e-133
Identities = 243/243 (100%), Positives = 243/243 (100%)
Query: 1 MALVKEVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNALI 60
MALVKEVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNALI
Sbjct: 1 MALVKEVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNALI 60
Query: 61 ITHHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFDKTHLNKHFAHALLEFDGL 120
ITHHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFDKTHLNKHFAHALLEFDGL
Sbjct: 61 ITHHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFDKTHLNKHFAHALLEFDGL 120
Query: 121 VEKGLMLVKENANIEFDALVKKIKSSLGVGSLACVKSSQTIKDLAFVCGSGASMFSSLKA 180
VEKGLMLVKENANIEFDALVKKIKSSLGVGSLACVKSSQTIKDLAFVCGSGASMFSSLKA
Sbjct: 121 VEKGLMLVKENANIEFDALVKKIKSSLGVGSLACVKSSQTIKDLAFVCGSGASMFSSLKA 180
Query: 181 QSCLITGDVKYHDAMIAQSLGISLIDATHYYSERGFALIVAEILHSFNYLVTIENFKNPL 240
QSCLITGDVKYHDAMIAQSLGISLIDATHYYSERGFALIVAEILHSFNYLVTIENFKNPL
Sbjct: 181 QSCLITGDVKYHDAMIAQSLGISLIDATHYYSERGFALIVAEILHSFNYLVTIENFKNPL 240
Query: 241 QII 243
QII
Sbjct: 241 QII 243
>ref|NP_223611.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZKP2|Y959_HELPJ Hypothetical protein JHP0893
pir||F71876 hypothetical protein jhp0893 - Helicobacter pylori (strain J99)
gb|AAD06461.1| (AE001518) putative [Helicobacter pylori J99]
Length = 243
Score = 444 bits (1143), Expect = e-124
Identities = 225/243 (92%), Positives = 233/243 (95%)
Query: 1 MALVKEVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNALI 60
MALVKEVL VLNRLSPFELQESWDNSGLNVGS NSEFS+I+ACLEITL+IALNA +NALI
Sbjct: 1 MALVKEVLEVLNRLSPFELQESWDNSGLNVGSGNSEFSQIIACLEITLQIALNAQENALI 60
Query: 61 ITHHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFDKTHLNKHFAHALLEFDGL 120
ITHHPLIFKPLKTLNDE YPGNILKILIQKN+SVISMHTNFDKTHLNKHFA ALL FDGL
Sbjct: 61 ITHHPLIFKPLKTLNDEAYPGNILKILIQKNISVISMHTNFDKTHLNKHFARALLRFDGL 120
Query: 121 VEKGLMLVKENANIEFDALVKKIKSSLGVGSLACVKSSQTIKDLAFVCGSGASMFSSLKA 180
+EKGLMLVKENANIEFD L++KIK SLGVG LACVKSSQ IKDLAFVCGSGASMFSSLKA
Sbjct: 121 IEKGLMLVKENANIEFDVLLEKIKLSLGVGQLACVKSSQMIKDLAFVCGSGASMFSSLKA 180
Query: 181 QSCLITGDVKYHDAMIAQSLGISLIDATHYYSERGFALIVAEILHSFNYLVTIENFKNPL 240
QSCLITGDVKYHDAMIAQSLGISLIDATHYYSERGFALIVAEILHSFNYLVTIENFKNPL
Sbjct: 181 QSCLITGDVKYHDAMIAQSLGISLIDATHYYSERGFALIVAEILHSFNYLVTIENFKNPL 240
Query: 241 QII 243
QII
Sbjct: 241 QII 243
>ref|NP_281877.1| (NC_002163) hypothetical protein Cj0705 [Campylobacter jejuni]
sp|Q9PPK2|Y705_CAMJE Hypothetical protein Cj0705
pir||D81341 hypothetical protein Cj0705 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72979.1| (AL139076) hypothetical protein Cj0705 [Campylobacter jejuni]
Length = 241
Score = 175 bits (443), Expect = 4e-43
Identities = 101/239 (42%), Positives = 142/239 (59%), Gaps = 3/239 (1%)
Query: 4 VKEVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNALIITH 63
+ E+ L++LSPF +QESWDNSG+ +G +SE S + L+I I A +N+LIITH
Sbjct: 3 LSEIYNFLDQLSPFNIQESWDNSGILLGDRDSEISTVYLSLDIDENIIKEASENSLIITH 62
Query: 64 HPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFDKTHLNKHFAHALLEFDGLVEK 123
HPLIFK LK L D+ YP +K +I KN+S+ISMHTN+D +HLN +F +L F +
Sbjct: 63 HPLIFKGLKDLYDKTYPRAFIKEMIYKNISLISMHTNYDLSHLNTYFTEEILGFKISFKD 122
Query: 124 GLMLVKENANIEFDALVKKIKSSLGVGSLACVK-SSQTIKDLAFVCGSGASMFSSLKAQS 182
++ EN ++ F+AL +K L + L + IK +A GSG + S + A
Sbjct: 123 KFLIYVEN-SMSFEALCDWVKKKLNLQILRVSDCGKKDIKRIAICTGSGGDLISKVDA-D 180
Query: 183 CLITGDVKYHDAMIAQSLGISLIDATHYYSERGFALIVAEILHSFNYLVTIENFKNPLQ 241
C ++GD KYH A+ A S ISLID H+ SER F+ +A+ L + V I KNP Q
Sbjct: 181 CFLSGDFKYHQALEALSNQISLIDLGHFESERYFSQCLAKDLKNLPLQVIITVSKNPFQ 239
>ref|NP_604213.1| (NC_003454) NGG1-interacting factor 3 [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gb|AAL95512.1| (AE010636) NGG1-interacting factor 3 [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 258
Score = 107 bits (266), Expect = 1e-22
Identities = 74/240 (30%), Positives = 125/240 (51%), Gaps = 16/240 (6%)
Query: 5 KEVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNA--LIIT 62
++++ +L + P E WDN GL +G + E +I L+ TL+ NA ++IT
Sbjct: 4 RDIINILEKKFPKINAEEWDNIGLLIGDYDKEVKKIQFSLDATLESIENAISEKVDMLIT 63
Query: 63 HHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFDKT--HLNKHF-------AHA 113
HHP+IFK +K + ++ G ++ LI+ +++V S+HTN D + LN + +
Sbjct: 64 HHPIIFKAIKDITEQNILGKKIRNLIKNDINVYSIHTNLDSSIEGLNDYVLKKIGISEYK 123
Query: 114 LLEFDGLVEKGL-MLVKENANIEFDALVKKIKSSLGVGSLACVKS--SQTIKDLAFVCGS 170
+L+FD G+ + K N ++++K L + +L + + ++ IK +A + GS
Sbjct: 124 ILDFDEEKNCGIGRIFKLNEEKNLKKFIEELKLKLKILNLRVISNDLNKKIKKVALINGS 183
Query: 171 GASMFSSLKAQ--SCLITGDVKYHDAMIAQSLGISLIDATHYYSERGFALIVAEILHSFN 228
+ + K + ITGDV YHDA+ A G+S+ID HY SE F I+ E L N
Sbjct: 184 AMNYWKKAKKEKVDLFITGDVSYHDALDALENGLSVIDFGHYESEYFFYEILIEELKDNN 243
>ref|NP_562920.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
sp|Q8XIV9|YK04_CLOPE Hypothetical protein CPE2004
dbj|BAB81710.1| (AP003192) conserved hypothetical protein [Clostridium perfringens]
Length = 262
Score = 99.0 bits (245), Expect = 4e-20
Identities = 71/238 (29%), Positives = 120/238 (49%), Gaps = 22/238 (9%)
Query: 4 VKEVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNA--LII 61
+ +++ ++ ++P L+E +DN GL VG ++I+ L+ T ++ A + LI+
Sbjct: 3 LNDIINIIEDIAPVNLKEGFDNVGLMVGDREKNITKILLALDCTEEVIKEAKEMGAELIL 62
Query: 62 THHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFD--KTHLNKHFAHALLEFDG 119
THHPL+F+ T+ + G + LI+ ++++ S HTN+D K LN L G
Sbjct: 63 THHPLLFRKPSTITTDTLLGRKIISLIKNDINLYSAHTNWDSVKGGLNDTLVEILGFNKG 122
Query: 120 LV--------EKGL----MLVKENANIEFDALVKKIKSSLGVGSLACVKS-SQTIKDLAF 166
++ E G+ L KE +E ++ IKSSLGV +L ++ IK +A
Sbjct: 123 IIMDKSPVDSEAGIGRVVELTKEMTVLE---IINLIKSSLGVKNLRYAGDLNEVIKKIAI 179
Query: 167 VCGSGASMFSSLK--AQSCLITGDVKYHDAMIAQSLGISLIDATHYYSERGFALIVAE 222
V GSG F K +ITGD YH + +G++++D H+ SE + V+E
Sbjct: 180 VNGSGQDFFGDAKKLGADLIITGDTTYHFVSDYKEMGLNILDIGHFNSEWPVLIKVSE 237
>ref|NP_347934.1| (NC_003030) Uncharacterized protein of YbgI/Acr family [Clostridium
acetobutylicum]
sp|Q97JI0|YD03_CLOAB Hypothetical protein CAC1303
gb|AAK79274.1|AE007642_6 (AE007642) Uncharacterized protein of YbgI/Acr family [Clostridium
acetobutylicum]
Length = 268
Score = 98.2 bits (243), Expect = 7e-20
Identities = 73/240 (30%), Positives = 117/240 (48%), Gaps = 21/240 (8%)
Query: 4 VKEVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNA--LII 61
VK++ ++ +P L+E +DN GL VG + I+ L+ T+ + A + +II
Sbjct: 5 VKDLCNIIEDFAPISLKEDFDNVGLMVGDREASVDAIMTALDCTMDVIDEAIEKNCNMII 64
Query: 62 THHPLIF-KPLKTLNDEIYPGNILKILIQKNVSVISMHTNFD--KTHLNKHFAHALLEFD 118
THHP++F KP K D + I+KI I N++V S HTN D K +N + +L FD
Sbjct: 65 THHPILFKKPSKITMDTLLGKKIIKI-ISNNINVYSAHTNLDSVKDGINDAVVN-ILGFD 122
Query: 119 --GLVEKGLMLVKE---------NANIEFDALVKKIKSSLGVGSLA-CVKSSQTIKDLAF 166
++ K VKE N+ L ++K S + SL C + I A
Sbjct: 123 KSSILAKNNKAVKEAGIGRVVELEQNMTLKELCDRVKESFKIQSLRYCGDEDKKIHSFAV 182
Query: 167 VCGSGASMFSSLKAQ--SCLITGDVKYHDAMIAQSLGISLIDATHYYSERGFALIVAEIL 224
+ GSG F + + C+ITGD YH + I++IDA H+ +E +++++ L
Sbjct: 183 INGSGQDFFEEARKRGVDCIITGDTSYHYVSDYNEMNIAVIDAGHFGTEWPSVVVMSKKL 242
>ref|NP_267229.1| (NC_002662) HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis]
sp|Q9CGM3|YA73_LACLA Hypothetical protein ykiD
gb|AAK05171.1|AE006340_4 (AE006340) HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis]
Length = 257
Score = 88.6 bits (218), Expect = 5e-17
Identities = 75/243 (30%), Positives = 111/243 (44%), Gaps = 14/243 (5%)
Query: 4 VKEVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNA--LII 61
+ + ++ + P EL D GL VG+ N E ++++ L+I + A LII
Sbjct: 3 ISDFMLEYEKFCPKELAVEGDPVGLQVGNPNDELTKVLVTLDIREQTVAEAKALGVNLII 62
Query: 62 THHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFDKT--HLNKHFAHALLEFDG 119
HPLIF+PL L ++ L + ++V + HTN D LN +F+ L D
Sbjct: 63 AKHPLIFRPLSALTSMNDQEKLVLDLARAGIAVYTSHTNIDVVTGGLNDYFSQLLGMTDI 122
Query: 120 LV---EKGLMLVKENANIEFDALVKKIKSSLGVGSLACV----KSSQTIKDLAFVCGSGA 172
V E+GL V E L +K+K+S G+ L + +Q I +A GSG
Sbjct: 123 EVLDDEEGLGRVGNIELTELSVLTEKVKASFGLDRLRLITYDHNLTQKIGRIAICGGSGG 182
Query: 173 SMFSSL--KAQSCLITGDVKYHDAMIAQSLGISLIDATHYYSERGFALIVAEILHSFNYL 230
++ K ITGD+ YH S G+ ID HY E F +VA+ L SF+
Sbjct: 183 KLWPKALEKKADIYITGDIYYHVGHDMLSAGLLGIDPGHYI-EHAFIRLVADKLRSFDMG 241
Query: 231 VTI 233
V I
Sbjct: 242 VKI 244
>gb|EAA00104.1| (AAAB01008986) agCP10051 [Anopheles gambiae str. PEST]
Length = 300
Score = 86.7 bits (213), Expect = 2e-16
Identities = 71/245 (28%), Positives = 119/245 (47%), Gaps = 22/245 (8%)
Query: 1 MALVKEVLVVLNRLSPFELQESWDNSGLNVGSEN--SEFSEIVACLEITLKIALNAPQNA 58
MA + EV+ L+ +P L E WDN GL V N S + I+ +++T + A +
Sbjct: 28 MATLPEVVAKLSEFAPENLAEKWDNVGLLVEPRNNKSSITNILLTIDLTEAVVAEARETG 87
Query: 59 --LIITHHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFDK--THLNKHFAHAL 114
+II++HP IF PLK L + I+ I+ ++++ S HT++D +N A +L
Sbjct: 88 AQMIISYHPPIFAPLKRLTQASWKERIVIDCIRHDIAIYSPHTSWDNVTNGVNDWLADSL 147
Query: 115 LEFDG--LVEK---------GLMLVKENANIEFDALVKKIKSSLGVGSLACVKSS----Q 159
D ++E L VK E DA+ + +K + ++ SS +
Sbjct: 148 PHADSRPILENPINAAYGAGRLCTVKGEPLSERDAVQQIVKHTAMDCAMVSFASSGDKNR 207
Query: 160 TIKDLAFVCGSGASMFSSLKAQSCLITGDVKYHDAMIAQSLGISLIDATHYYSERGFALI 219
++ A GSGAS+ +KA ITG++ +H+ + A S G ++ H SERG+ +
Sbjct: 208 KVQTYAVCAGSGASVLKGVKA-DMYITGEMSHHEVLEATSNGTCVVLLGHSNSERGYLSV 266
Query: 220 VAEIL 224
+IL
Sbjct: 267 FKDIL 271
>ref|NP_487256.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
sp|Q8YS75|YW16_ANASP Hypothetical protein Alr3216
dbj|BAB74915.1| (AP003592) ORF_ID:alr3216~hypothetical protein [Nostoc sp. PCC
7120]
Length = 263
Score = 76.3 bits (186), Expect = 3e-13
Identities = 66/228 (28%), Positives = 104/228 (44%), Gaps = 23/228 (10%)
Query: 21 ESWDNSGLNV--GSENSEFSEIVACLEITLKIALNAP--QNALIITHHPLIFKPLKTLND 76
ESWDN G + G + E + ++ CL TL + A Q LI HHPLIF P K+L
Sbjct: 20 ESWDNCGWQIEPGILHEE-ARVLVCLTPTLAVMEEAIALQANLIFAHHPLIFSPPKSLRR 78
Query: 77 EIYPGNILKILIQKNVSVISMHTNFDKTHLNKHFAHALLEFDGLVEKGLMLVKE------ 130
++ ++ KN+ + S HTNFD+ + A L + GL + ++ +
Sbjct: 79 GEAIADMARLAFTKNIGIYSAHTNFDQ--VEDGTADVLAQILGLKDVAPIVPTQGGLGYG 136
Query: 131 -----NANIEFDALVKKIKSSLGVGSLACVKSS---QTIKDLAFVCGSGASMFSSL--KA 180
+ + L+ I++ L L ++ Q I +A + GSGA S++
Sbjct: 137 RVGLLDPFLNLQELLTVIQTRLAPPDLIFSPTADLQQIISRVAVLGGSGAGFISAVAETG 196
Query: 181 QSCLITGDVKYHDAMIAQSLGISLIDATHYYSERGFALIVAEILHSFN 228
+T D K+H ++ G+ LIDA HY +ER + E L S N
Sbjct: 197 AEAYLTSDCKFHQFQESRDRGLILIDAGHYATERPACDRLVEKLRSLN 244
>ref|NP_247922.1| (NC_000909) conserved hypothetical protein [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
pir||G64415 hypothetical protein homolog MJ0927 - Methanococcus jannaschii
gb|AAB98929.1| (U67536) conserved hypothetical protein [Methanococcus jannaschii]
[Methanocaldococcus jannaschii]
Length = 249
Score = 75.9 bits (185), Expect = 4e-13
Identities = 67/225 (29%), Positives = 110/225 (48%), Gaps = 24/225 (10%)
Query: 5 KEVLVVLNRLSPFELQESWDNSGLNVGSE-NSEFSEIVACLEITLKIALNAPQNAL--II 61
KE++ + +P +L DN GL VG + E ++ L+ +L + A + + +
Sbjct: 9 KEIIEFIETFAPKDLAIEGDNIGLQVGDNLDKEIKKLGIALDPSLSVIKKAEKEGVDFLF 68
Query: 62 THHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFD--KTHLNKHFA--HALLEF 117
THHPL+ P++ IY LKIL++ ++ + S HTN D K LN A + L
Sbjct: 69 THHPLLKDPIRNFTGVIYKK--LKILMENDIILYSAHTNLDICKNGLNDALAELYNLENP 126
Query: 118 DGLVEKGLMLVK--ENANIEFDALVKKIKSSLGVGSLACVKSSQTIKD---LAFVCGSGA 172
L + GL V + + EF + KK + V S+ + D LA + G G
Sbjct: 127 KPLYDNGLGRVGIFKGSFEEFLEITKKY-----IHKNPIVVKSKEVDDNFKLAVLSGYGL 181
Query: 173 SMFSSLK----AQSCLITGDVKYHDAMIAQSLGISLIDATHYYSE 213
S SS+K ++GD+ +H ++A+ LG+ ++DATHY +E
Sbjct: 182 SQ-SSIKYVAEKADVYLSGDLTHHSKILAEELGLVVVDATHYSTE 225
>sp|Q58337|Y927_METJA Hypothetical protein MJ0927
Length = 244
Score = 75.9 bits (185), Expect = 4e-13
Identities = 67/225 (29%), Positives = 110/225 (48%), Gaps = 24/225 (10%)
Query: 5 KEVLVVLNRLSPFELQESWDNSGLNVGSE-NSEFSEIVACLEITLKIALNAPQNAL--II 61
KE++ + +P +L DN GL VG + E ++ L+ +L + A + + +
Sbjct: 4 KEIIEFIETFAPKDLAIEGDNIGLQVGDNLDKEIKKLGIALDPSLSVIKKAEKEGVDFLF 63
Query: 62 THHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFD--KTHLNKHFA--HALLEF 117
THHPL+ P++ IY LKIL++ ++ + S HTN D K LN A + L
Sbjct: 64 THHPLLKDPIRNFTGVIYKK--LKILMENDIILYSAHTNLDICKNGLNDALAELYNLENP 121
Query: 118 DGLVEKGLMLVK--ENANIEFDALVKKIKSSLGVGSLACVKSSQTIKD---LAFVCGSGA 172
L + GL V + + EF + KK + V S+ + D LA + G G
Sbjct: 122 KPLYDNGLGRVGIFKGSFEEFLEITKKY-----IHKNPIVVKSKEVDDNFKLAVLSGYGL 176
Query: 173 SMFSSLK----AQSCLITGDVKYHDAMIAQSLGISLIDATHYYSE 213
S SS+K ++GD+ +H ++A+ LG+ ++DATHY +E
Sbjct: 177 SQ-SSIKYVAEKADVYLSGDLTHHSKILAEELGLVVVDATHYSTE 220
>emb|CAA71301.1| (Y10251) unknown protein [Methanopyrus kandleri]
Length = 238
Score = 75.5 bits (184), Expect = 5e-13
Identities = 63/246 (25%), Positives = 113/246 (45%), Gaps = 29/246 (11%)
Query: 4 VKEVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNALIITH 63
V+ VL VL L+PF+L D GL G + +V CL++T ++ L+I+H
Sbjct: 11 VEGVLEVLEGLAPFDLAVEGDEVGLVAGDPSDSVDRVVVCLDLTPQLVRRLSPETLVISH 70
Query: 64 HPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFDKTHLNKHFAHALLEFDGL--V 121
HP+ PG +L+ + VI H+N+D A AL E+ GL V
Sbjct: 71 HPV-------------PGPLLE---RVRSPVIVFHSNWDAARA----AEALAEWLGLEDV 110
Query: 122 EKGLMLVKENA-NIEFDALVKKIKSSLGVGSLACVKSSQTIKDLAFVCGSGAS-----MF 175
K L E + + L+ +++ +L + V + I + V G G S
Sbjct: 111 RKPDPLAAEGRFDGTLEDLLSRVEDALNPPEIRVVATKNRIHRVIVVSGFGLSTDRFVRL 170
Query: 176 SSLKAQSCLITGDVKYHDAMIAQSLGISLIDATHYYSE-RGFALIVAEILHSFNYLVTIE 234
++ + +++GD+ + A++A+ LG++ +DATH +E G + E+ V +
Sbjct: 171 AAKEGADAVVSGDLTHRTAVVARVLGVTCVDATHARTELPGLKELAEELSKRLRVRVELR 230
Query: 235 NFKNPL 240
+ ++P+
Sbjct: 231 SPEHPV 236
>ref|NP_646328.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB95376.1| (AP004827) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 366
Score = 75.5 bits (184), Expect = 5e-13
Identities = 39/101 (38%), Positives = 64/101 (62%), Gaps = 3/101 (2%)
Query: 4 VKEVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNA--LII 61
+ +++ +L+ PF ESWDN GL +G E+ E + ++ L+ TL++ A + II
Sbjct: 3 IADLMTLLDHHVPFSTAESWDNVGLLIGDEDVEVTGVLTALDCTLEVVNEAIEKGYNTII 62
Query: 62 THHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFD 102
+HHPLIFK + +L Y G I++ LIQ ++++I+MHTN D
Sbjct: 63 SHHPLIFKGVTSLKANGY-GLIIRKLIQHDINLIAMHTNLD 102
Score = 52.0 bits (123), Expect = 6e-06
Identities = 48/156 (30%), Positives = 74/156 (46%), Gaps = 15/156 (9%)
Query: 68 FKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFDKTH----LNKHFAHALLEFDGLVEK 123
FKP+ N I G I KI V + M + K+ + ++ + FD + K
Sbjct: 174 FKPVGEANPTI--GQIDKIEYVDEVKIEFMIDAYQKSRAEQLIKQYHPYETPVFDFIEIK 231
Query: 124 -----GLMLVKENAN-IEFDALVKKIKSSLGVGSLACV-KSSQTIKDLAFVCGSGASMFS 176
GL ++ E N + + IKS L + S+ V +S+Q IK +A + GSG
Sbjct: 232 QTSLYGLGVMAEVDNQMTLEDFAADIKSKLNIPSVRFVGESNQKIKRIAIIGGSGIGYEY 291
Query: 177 SLKAQSC--LITGDVKYHDAMIAQSLGISLIDATHY 210
Q +TGD+K+HDA+ A+ G++LID HY
Sbjct: 292 QAVQQGADVFVTGDIKHHDALDAKIHGVNLIDINHY 327
>ref|NP_613302.1| (NC_003551) Uncharacterized conserved protein [Methanopyrus
kandleri AV19]
gb|AAM01232.1| (AE010303) Uncharacterized conserved protein [Methanopyrus kandleri
AV19]
Length = 253
Score = 75.5 bits (184), Expect = 5e-13
Identities = 63/246 (25%), Positives = 113/246 (45%), Gaps = 29/246 (11%)
Query: 4 VKEVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNALIITH 63
V+ VL VL L+PF+L D GL G + +V CL++T ++ L+I+H
Sbjct: 10 VEGVLEVLEGLAPFDLAVEGDEVGLVAGDPSDSVDRVVVCLDLTPQLVRRLSPETLVISH 69
Query: 64 HPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFDKTHLNKHFAHALLEFDGL--V 121
HP+ PG +L+ + VI H+N+D A AL E+ GL V
Sbjct: 70 HPV-------------PGPLLE---RVRSPVIVFHSNWDAARA----AEALAEWLGLEDV 109
Query: 122 EKGLMLVKENA-NIEFDALVKKIKSSLGVGSLACVKSSQTIKDLAFVCGSGAS-----MF 175
K L E + + L+ +++ +L + V + I + V G G S
Sbjct: 110 RKPDPLAAEGRFDGTLEDLLSRVEDALNPPEIRVVATKNRIHRVIVVSGFGLSTDRFVRL 169
Query: 176 SSLKAQSCLITGDVKYHDAMIAQSLGISLIDATHYYSE-RGFALIVAEILHSFNYLVTIE 234
++ + +++GD+ + A++A+ LG++ +DATH +E G + E+ V +
Sbjct: 170 AAKEGADAVVSGDLTHRTAVVARVLGVTCVDATHARTELPGLKELAEELSKRLRVRVELR 229
Query: 235 NFKNPL 240
+ ++P+
Sbjct: 230 SPEHPV 235
>emb|CAB72937.1| (AJ243321) hypothetical protein [Lactobacillus helveticus]
Length = 265
Score = 73.2 bits (178), Expect = 2e-12
Identities = 56/243 (23%), Positives = 108/243 (44%), Gaps = 16/243 (6%)
Query: 1 MALVKEVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNAL- 59
M VK+++ L P ++ D G+ +GS ++ ++++ L++ ++ A + +
Sbjct: 1 MTKVKDIVNRLREDFPEDIASKGDPVGMQIGSMEADVTKVMTTLDVRPQVVEEAVEKGVN 60
Query: 60 -IITHHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFDKTHLN----------- 107
I++HHP++F+P + L+ + +I+ ++V S+HTN DK
Sbjct: 61 FIVSHHPVMFRPARNLDFADAQNAMYGNIIKNGITVYSIHTNSDKAQDGSADWQAEELGL 120
Query: 108 KHFAHALLEFDGLVEKGLMLVKENANIEFDALVKKIKSSLGVGSLACVKSSQTIKDLAFV 167
K L+ DG+ + E A K + + L +++ I + F+
Sbjct: 121 KDVEPFCLDDDGIAMGRKGRLPETMTAYDFAYYVKENMGIKMARLITADNNKKISTVGFI 180
Query: 168 CGSGASMFSSLKAQ--SCLITGDVKYHDAMIAQSLGISLIDATHYYSERGFALIVAEILH 225
CG G ++ ITGDV YH S G++++D H Y+E+ F V + L
Sbjct: 181 CGDGGKYWTRALDDHLDAFITGDVYYHVGHDMISSGLTVVDPGH-YTEKLFKYKVYDRLK 239
Query: 226 SFN 228
+N
Sbjct: 240 KWN 242
>ref|NP_372083.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_374672.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
sp|Q99TT7|YF59_STAAM Hypothetical protein SAV1559/SA1388
dbj|BAB42651.1| (AP003134) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB57721.1| (AP003362) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 366
Score = 72.8 bits (177), Expect = 3e-12
Identities = 38/101 (37%), Positives = 63/101 (61%), Gaps = 3/101 (2%)
Query: 4 VKEVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNA--LII 61
+ +++ +L+ PF ESWDN GL +G + E + ++ L+ TL++ A + II
Sbjct: 3 IADLMTLLDHHVPFSTAESWDNVGLLIGDGDVEVTGVLTALDCTLEVVNEAIEKGYNTII 62
Query: 62 THHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFD 102
+HHPLIFK + +L Y G I++ LIQ ++++I+MHTN D
Sbjct: 63 SHHPLIFKGVTSLKANGY-GLIIRKLIQHDINLIAMHTNLD 102
Score = 51.2 bits (121), Expect = 1e-05
Identities = 48/156 (30%), Positives = 74/156 (46%), Gaps = 15/156 (9%)
Query: 68 FKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFDKTH----LNKHFAHALLEFDGLVEK 123
FKP+ N I G I KI V + M + K+ + ++ + FD + K
Sbjct: 174 FKPVGEANPTI--GQIDKIEDVDEVKIEFMIDAYQKSRAEQLIKQYHPYETPVFDFIEIK 231
Query: 124 -----GLMLVKENAN-IEFDALVKKIKSSLGVGSLACV-KSSQTIKDLAFVCGSGASMFS 176
GL ++ E N + + IKS L + S+ V +S+Q IK +A + GSG
Sbjct: 232 QTSLYGLGVMAEVDNQMTLEDFAADIKSKLNIPSVRFVGESNQKIKRIAIIGGSGIGYEY 291
Query: 177 SLKAQSC--LITGDVKYHDAMIAQSLGISLIDATHY 210
Q +TGD+K+HDA+ A+ G++LID HY
Sbjct: 292 QAVQQGADVFVTGDIKHHDALDAKIHGVNLIDINHY 327
>ref|NP_623343.1| (NC_003869) conserved hypothetical protein [Thermoanaerobacter
tengcongensis]
gb|AAM24947.1| (AE013129) conserved hypothetical protein [Thermoanaerobacter
tengcongensis]
Length = 376
Score = 70.1 bits (170), Expect = 2e-11
Identities = 33/98 (33%), Positives = 61/98 (61%), Gaps = 2/98 (2%)
Query: 7 VLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNA--LIITHH 64
++ +++RL+P + + WDN GL VG + S+I+ L+ T ++ A + +I+THH
Sbjct: 13 IVSIMDRLAPRKFAQDWDNVGLIVGDPLQDVSKILVALDATHEVVEEAIEKKVDMIVTHH 72
Query: 65 PLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFD 102
PLIFK +K++ + G ++ LI+ +S+ + HT+FD
Sbjct: 73 PLIFKSIKSVRSDTPVGMLVMKLIKHEISLYAAHTSFD 110
Score = 57.8 bits (138), Expect = 1e-07
Identities = 36/89 (40%), Positives = 50/89 (55%), Gaps = 3/89 (3%)
Query: 139 LVKKIKSSLGVGSLACVKS-SQTIKDLAFVCGSGASMFSS--LKAQSCLITGDVKYHDAM 195
L K+K+ L SL V + +K +A GSGAS+ +K LIT D+ YHDA+
Sbjct: 262 LALKVKAKLKAESLKVVGDLERRVKKVAVCGGSGASLIHKAVMKGADVLITADIGYHDAV 321
Query: 196 IAQSLGISLIDATHYYSERGFALIVAEIL 224
AQ LG++LIDA H+ +E +AE L
Sbjct: 322 EAQHLGLALIDAGHFATENIAVRFIAEYL 350
>dbj|BAA11246.1| (D78182) ORF4 [Streptococcus mutans]
Length = 262
Score = 68.2 bits (165), Expect = 8e-11
Identities = 65/237 (27%), Positives = 106/237 (44%), Gaps = 22/237 (9%)
Query: 16 PFELQESWDNSGLNVGSENSEFSEIVACLEI---TLKIALNAPQNALIITHHPLIFKPLK 72
P +L D SGL +G+ + E ++ L++ T+ A+ + LI+ H P IF+PLK
Sbjct: 15 PQDLSLEGDISGLQIGTLDKEIKRLMIALDVRETTVAEAIEKKVDLLIVKHAP-IFRPLK 73
Query: 73 TLNDEIYPGNILKILIQKNVSVISMHTNFD--KTHLNKHFAHAL------LEFDGLVEKG 124
L E +I LI+ +++V HTN D LN F L + + G
Sbjct: 74 NLV-ETAQNHIYFNLIKHDIAVYVSHTNIDIVPDGLNDWFCDLLDIKNRRILSPSKDDYG 132
Query: 125 LMLVKENANIEFDALVKKIKSSLGVGSLACV---KSSQTIKDLAFVCGSGASMFSSL--K 179
+ V + + + F+ L KK+K + S+ V +++ I +A GSG S + K
Sbjct: 133 IGRVGDISPLSFEDLAKKVKKIFNLDSVRLVSYGENNPLISRIAICGGSGQSFYQEALTK 192
Query: 180 AQSCLITGDVKYHDAMIAQSLGISLIDATHYYSERGFALIVAEILHSFNYLVTIENF 236
ITGD+ YH A + G+ +D H+ L V ++ F EN+
Sbjct: 193 GAQVYITGDIYYHTAQEMLTNGLLALDPGHHIE----VLFVRKLAEKFQTWSCQENW 245
>ref|NP_269125.1| (NC_002737) conserved hypothetical protein [Streptococcus pyogenes]
[Streptococcus pyogenes M1 GAS]
ref|NP_607129.1| (NC_003485) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
sp|Q9A049|Y931_STRPY Hypothetical protein SPy0931/spyM18_0988
gb|AAK33846.1| (AE006542) conserved hypothetical protein [Streptococcus pyogenes
M1 GAS]
gb|AAL97628.1| (AE010027) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
Length = 262
Score = 67.4 bits (163), Expect = 1e-10
Identities = 65/222 (29%), Positives = 95/222 (42%), Gaps = 18/222 (8%)
Query: 5 KEVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNA--LIIT 62
K ++ P +L D GL +GS + + +++ L+I A +N LIIT
Sbjct: 4 KTLIDAYEAFCPLDLSMEGDVKGLQMGSLDKDIRKVMITLDIRESTVAEAIKNEVDLIIT 63
Query: 63 HHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFDKTH--LNKHFAHALLEF--- 117
H IFKPLK L +IL L++ ++SV HTN D LN F LLE
Sbjct: 64 KHAPIFKPLKDLVSSPQR-DILLDLVKHDISVYVSHTNIDIVPGGLNDWFCD-LLEIKEA 121
Query: 118 -------DGLVEKGLMLVKENANIEFDALVKKIKSSLGVGSLACVKSSQTIKDLAFVCGS 170
+G + VKE A E + VK++ V + K + I +A GS
Sbjct: 122 TYLSETKEGFGIGRIGTVKEQALEELASKVKRVFDLDTVRLIRYDKENPLISKIAICGGS 181
Query: 171 GASMFSSL--KAQSCLITGDVKYHDAMIAQSLGISLIDATHY 210
G + K ITGD+ YH A + G+ +D H+
Sbjct: 182 GGEFYQDAVQKGADVYITGDIYYHTAQEMLTEGLFAVDPGHH 223
>ref|NP_609790.1| (NM_135946) CG4278 gene product [Drosophila melanogaster]
sp|Q9NK57|A36A_DROME Anon-35F/36A protein
gb|AAF45006.1|AE003406_211 (AE003416) symbol=anon-35F/36A; synonym=BG:DS02740.16;
cDNA=method:''sim4'', score:''1000.0'',
desc:''anon-35F/36A Drosophila melanogaster embryo cDNA
clone, full length mRNA sequence from BDGP (Ling Hong &
Damon Harvey, unpublished)''; match=method:''>
gb|AAL39701.1| (AY069556) LD28566p [Drosophila melanogaster]
Length = 292
Score = 67.4 bits (163), Expect = 1e-10
Identities = 65/260 (25%), Positives = 118/260 (45%), Gaps = 26/260 (10%)
Query: 2 ALVKEVLVVLNRLSPFELQESWDNSGLNVGSENS-EFSEIVACLEITLKIALNAPQNA-- 58
A+VKE L +P E WDN GL + + +I+ ++T + A +
Sbjct: 15 AVVKE----LENFAPTSWAEKWDNVGLLIEPHREKQIKKILLTNDLTEPVVKEALEKEAE 70
Query: 59 LIITHHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFDKTH--LNKHFAHAL-- 114
LII++HP IFKPL + + ++ + ++++ S HT +DK +N + A+
Sbjct: 71 LIISYHPPIFKPLTRITQSHWKERVVAACLANDIALYSPHTAWDKKSGGVNDWLSKAVNI 130
Query: 115 -----LEFD-----GLVEKGLMLVKENANIEFDALVKKIKSSLGVGSLACVKSSQTIKDL 164
LE + G + K + ++L K+I++S+ V I+ +
Sbjct: 131 ISIRPLEPELGAPPGTGSGRYIETKMELSQVVESLQKRIRNSVHVALAVGHTPKTLIQSV 190
Query: 165 AFVCGSGASMFSSLKAQSCLITGDVKYHDAMIAQSLGISLIDATHYYSERG----FALIV 220
GSGAS+ ++A +ITG++ +H+ + +++ H SERG F I+
Sbjct: 191 GICAGSGASLLKGIQA-DLIITGEMSHHEVLEFTHNNTTVLLCNHSNSERGFLHEFCPIL 249
Query: 221 AEILHSFNYLVTIENFKNPL 240
A+ L+ + E K+PL
Sbjct: 250 AKSLNEECLVFVSEVDKDPL 269
>gb|AAF53525.1| (AE003650) CG4278 gene product [Drosophila melanogaster]
Length = 288
Score = 67.4 bits (163), Expect = 1e-10
Identities = 65/260 (25%), Positives = 118/260 (45%), Gaps = 26/260 (10%)
Query: 2 ALVKEVLVVLNRLSPFELQESWDNSGLNVGSENS-EFSEIVACLEITLKIALNAPQNA-- 58
A+VKE L +P E WDN GL + + +I+ ++T + A +
Sbjct: 11 AVVKE----LENFAPTSWAEKWDNVGLLIEPHREKQIKKILLTNDLTEPVVKEALEKEAE 66
Query: 59 LIITHHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFDKTH--LNKHFAHAL-- 114
LII++HP IFKPL + + ++ + ++++ S HT +DK +N + A+
Sbjct: 67 LIISYHPPIFKPLTRITQSHWKERVVAACLANDIALYSPHTAWDKKSGGVNDWLSKAVNI 126
Query: 115 -----LEFD-----GLVEKGLMLVKENANIEFDALVKKIKSSLGVGSLACVKSSQTIKDL 164
LE + G + K + ++L K+I++S+ V I+ +
Sbjct: 127 ISIRPLEPELGAPPGTGSGRYIETKMELSQVVESLQKRIRNSVHVALAVGHTPKTLIQSV 186
Query: 165 AFVCGSGASMFSSLKAQSCLITGDVKYHDAMIAQSLGISLIDATHYYSERG----FALIV 220
GSGAS+ ++A +ITG++ +H+ + +++ H SERG F I+
Sbjct: 187 GICAGSGASLLKGIQA-DLIITGEMSHHEVLEFTHNNTTVLLCNHSNSERGFLHEFCPIL 245
Query: 221 AEILHSFNYLVTIENFKNPL 240
A+ L+ + E K+PL
Sbjct: 246 AKSLNEECLVFVSEVDKDPL 265
>ref|NP_212602.1| (NC_001318) conserved hypothetical protein [Borrelia burgdorferi]
sp|O51424|Y468_BORBU Hypothetical protein BB0468
pir||C70158 conserved hypothetical protein BB0468 - Lyme disease spirochete
gb|AAC66826.1| (AE001151) conserved hypothetical protein [Borrelia burgdorferi]
Length = 248
Score = 67.4 bits (163), Expect = 1e-10
Identities = 57/228 (25%), Positives = 100/228 (43%), Gaps = 17/228 (7%)
Query: 4 VKEVLVVLNRLSPFELQESWDNS--GLNVGSENSEFSEIVACLEITLKIALNAPQNALII 61
V+++ LN + E D + GL VG+ N++ +++ ++ + A N +I
Sbjct: 3 VRDLSFKLNSIFDINKYEHIDKNLNGLQVGNINAKVNKVAFAVDASFSTLKEAKGNDFLI 62
Query: 62 THHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFDKTHLNKHFAHALLEFDGLV 121
THH + + + + +Y K LI+ N+++ S+H D + H + +F GL
Sbjct: 63 THHGIFWSKKERIVSNMYDKT--KFLIENNLALYSVHLPMDAHSVYSH-SKVFSDFLGLK 119
Query: 122 EKGLMLVKENANI--------EFDALVKKIKSSLGVGSLACVKSSQTIKDLAFVCGSGAS 173
N+ F +++KIK L K +++ +A V GSG S
Sbjct: 120 NSFAFANYGGVNLGIIADSVFSFSEILEKIKKE-NKHILFSKKFKESVNKVAIVSGSGYS 178
Query: 174 MFSSLKAQSC--LITGDVKYHDAMIAQSLGISLIDATHYYSERGFALI 219
F ITGD + +A+ G++LI A HY++E F LI
Sbjct: 179 FFEEALCHDVDLFITGDTSHQIYSLAEEFGVNLIFAGHYFTET-FGLI 225
>ref|NP_359055.1| (NC_003098) Conserved hypothetical protein [Streptococcus
pneumoniae R6]
gb|AAL00266.1| (AE008515) Conserved hypothetical protein [Streptococcus pneumoniae
R6]
Length = 265
Score = 65.9 bits (159), Expect = 4e-10
Identities = 62/226 (27%), Positives = 93/226 (40%), Gaps = 19/226 (8%)
Query: 3 LVKEVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNA--LI 60
L EV+ P E D+ GL +G+ + ++ L+I + A + LI
Sbjct: 2 LASEVIQAYEAFCPQEFSMEGDSCGLQIGTLDKGIQRVMVALDIREETVAEAIEKGVDLI 61
Query: 61 ITHHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFD--KTHLNKHFAHAL---- 114
I H IF+P+K L I LI+ +++V HTN D + LN F L
Sbjct: 62 IVKHAPIFRPIKDLLASRPQNQIYIDLIKHDIAVYVSHTNIDIVENGLNDWFCQMLGIEE 121
Query: 115 ---LEFDGLVEKGLMLVKENANIEFDALVKKIKSSLGVGSLACVKSSQT-----IKDLAF 166
L+ G E+G+ + F L +++K + SL V + I +A
Sbjct: 122 TTYLQETG-PERGIGRIGNIQPQTFWELAQQVKQVFDLDSLRMVHYQENDLQKPISRVAI 180
Query: 167 VCGSGASMFSS--LKAQSCLITGDVKYHDAMIAQSLGISLIDATHY 210
GSG S + K ITGD+ YH A S G+ +D HY
Sbjct: 181 CGGSGQSFYKDALAKGADVYITGDIYYHTAQDMLSDGLLALDPGHY 226
>ref|NP_346053.1| (NC_003028) conserved hypothetical protein [Streptococcus
pneumoniae TIGR4]
sp|Q97PK0|YG09_STRPN Hypothetical protein SP1609
gb|AAK75693.1| (AE007455) conserved hypothetical protein [Streptococcus pneumoniae
TIGR4]
Length = 265
Score = 65.5 bits (158), Expect = 5e-10
Identities = 62/226 (27%), Positives = 93/226 (40%), Gaps = 19/226 (8%)
Query: 3 LVKEVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNA--LI 60
L EV+ P E D+ GL +G+ + ++ L+I + A + LI
Sbjct: 2 LASEVIQAYEAFCPQEFSMEGDSRGLQIGTLDKGIQRVMVALDIREETVAEAIEKGVDLI 61
Query: 61 ITHHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFD--KTHLNKHFAHAL---- 114
I H IF+P+K L I LI+ +++V HTN D + LN F L
Sbjct: 62 IVKHAPIFRPIKDLLASRPQNQIYIDLIKHDIAVYVSHTNIDIVENGLNDWFCQMLGIEE 121
Query: 115 ---LEFDGLVEKGLMLVKENANIEFDALVKKIKSSLGVGSLACVKSSQ-----TIKDLAF 166
L+ G E+G+ + F L +++K + SL V + I +A
Sbjct: 122 TTYLQETG-PERGIGRIGNIQPQTFWELAQQVKQVFDLDSLRMVHYQEDDLQKPISRVAI 180
Query: 167 VCGSGASMFSS--LKAQSCLITGDVKYHDAMIAQSLGISLIDATHY 210
GSG S + K ITGD+ YH A S G+ +D HY
Sbjct: 181 CGGSGQSFYKDALAKGADVYITGDIYYHTAQDMLSDGLLALDPGHY 226
>ref|NP_626549.1| (NC_003888) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
sp|Q9L012|YN01_STRCO Hypothetical protein SCO2301
emb|CAB88179.1| (AL352972) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
Length = 285
Score = 64.3 bits (155), Expect = 1e-09
Identities = 59/237 (24%), Positives = 105/237 (43%), Gaps = 27/237 (11%)
Query: 1 MALVKEVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLE-----ITLKIALNAP 55
M + EV+ L+ L P E ESWD G VG + E S ++ ++ + + L A
Sbjct: 1 MPRLSEVITALDALWPAERAESWDAVGTVVGEPDQEVSRVLFAVDPVQETVDEAVGLGAD 60
Query: 56 QNALIITHHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFDKTH---------- 105
L++THHPL + T+ + G ++ LI+ ++++ HTN D
Sbjct: 61 ---LLVTHHPLYLRGTTTVAASTFKGRVVHTLIKNDIALHVAHTNADTADPGVSDALAGA 117
Query: 106 LNKHFAHALL--EFDGLVEKGLMLVKENAN----IEFDALVKKIKSSLGVGSLACVKSSQ 159
L+ + L+ D +GL V E + E A + + G
Sbjct: 118 LDLNVVRPLVPDPSDPEGRRGLGRVCELTHPLTVRELAARAAERLPATAQGIRVAGDPEA 177
Query: 160 TIKDLAFVCGSGASMFSSLKAQ--SCLITGDVKYHDAMIAQSLG-ISLIDATHYYSE 213
T++ +A GSG S+F ++A +T D+++H A++ ++L+DA H+ +E
Sbjct: 178 TVRTVAVSGGSGDSLFDHVRAAGVDAFLTADLRHHPVSEARAHNPLALLDAAHWATE 234
>ref|NP_614475.1| (NC_003551) Uncharacterized conserved protein [Methanopyrus
kandleri AV19]
gb|AAM02405.1| (AE010410) Uncharacterized conserved protein [Methanopyrus kandleri
AV19]
Length = 248
Score = 63.2 bits (152), Expect = 2e-09
Identities = 55/227 (24%), Positives = 100/227 (43%), Gaps = 25/227 (11%)
Query: 1 MALVKEVLVVLNRLSPFELQESWDNSGLNV---GSENSEFSEIVACLEITLKIALNAPQN 57
MA+V+EV+ + L+P +L E WDN G+ V G + + ++ L+ T + A
Sbjct: 1 MAMVREVIDFVEELAPPDLAEDWDNPGIQVCPPGGLDRKAERVLVALDATHALE-RAGDA 59
Query: 58 ALIITHHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFDKTHLNKHFAHALLEF 117
L++THHPL+F+P + + Y +L+ +++ + + HTN D+
Sbjct: 60 DLVLTHHPLLFRPPRRIGGRWY--RVLRAVLEADAVFYAAHTNLDRAEGG--------VA 109
Query: 118 DGLVEKGLMLVKENANIEFDALV-------KKIKSSLGVGSLACVKSS-QTIKDLAFVCG 169
D L + + V+ A F L + + + + L V + + + V G
Sbjct: 110 DTLARRLNLRVEREACDGFGRLCEVPGSEEELLNALRNLSPLTTVYGDWEGVSRVLVVPG 169
Query: 170 S---GASMFSSLKAQSCLITGDVKYHDAMIAQSLGISLIDATHYYSE 213
+ G M +I G++KYH GI++++ H YSE
Sbjct: 170 AAPDGLVMECLRCGVDAVIAGEIKYHTRAELLEEGIAVVELGHEYSE 216
>ref|NP_011294.1| (NC_001139) similar to Listeria monocytogenes major sigma factor
(rpoD gene product); Nif3p [Saccharomyces cerevisiae]
sp|P53081|NIF3_YEAST NGG1-interacting factor 3
pir||S64243 hypothetical protein YGL221c - yeast (Saccharomyces cerevisiae)
emb|CAA96937.1| (Z72743) ORF YGL221c [Saccharomyces cerevisiae]
Length = 288
Score = 62.8 bits (151), Expect = 3e-09
Identities = 62/233 (26%), Positives = 105/233 (44%), Gaps = 38/233 (16%)
Query: 21 ESWDNSGLNVGSENSEFS--------EIVACLEITLKIALNAPQNA--LIITHHPLIFKP 70
+SWDN+GL + ++ + +++ +++T +A A +I+ +HP IF
Sbjct: 28 KSWDNTGLLIDCSTAQVTTADANAKTKVLLTVDLTKSVAQEAVDANCNVIVAYHPFIFPS 87
Query: 71 LKTLNDEIYPGNILKI-LIQKNVSVISMHTNFDKT----------------HLNKHFAHA 113
L+ P + I LIQ +SV HT D ++ K +A
Sbjct: 88 WNRLSPHTNPQHETAIKLIQYGISVYCPHTAVDAARGGVNDWLVRGLNNGENVAKSYALE 147
Query: 114 LL--EFDGLVEKGLMLVKENANIEFDALVKKIKSSLGV-----GSLACVKS--SQTIKDL 164
+ E D L+ G V+ N +I + +VK +K L V SLA + IK +
Sbjct: 148 TVSGETDDLIGYG-RFVEFNKDISLEQIVKNVKRVLRVPYVQVASLAAPSAWNQLKIKKV 206
Query: 165 AFVCGSGASMFSSLKAQSCLI-TGDVKYHDAMIAQSLGISLIDATHYYSERGF 216
A GSG+ +F LK L TG++ +H+ + + +G ++I H +ERGF
Sbjct: 207 AVCAGSGSGVFKQLKEDVDLYYTGEMSHHEVLKWKEMGKTVIVCNHSNTERGF 259
>ref|NP_658320.1| (NC_003995) DUF34, Domain of unknown function DUF34 [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 373
Score = 60.8 bits (146), Expect = 1e-08
Identities = 35/113 (30%), Positives = 60/113 (52%), Gaps = 4/113 (3%)
Query: 6 EVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNA--LIITH 63
E++ + + P L D GL +G+ N ++ L++T ++ A Q +II H
Sbjct: 9 EIISLFESMYPKHLAMEGDKIGLQIGALNKPVQHVLIALDVTEEVVDEAIQLGANVIIAH 68
Query: 64 HPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFD--KTHLNKHFAHAL 114
HPLIF PLK ++ + G I++ I+ ++++ + HTN D K +N A AL
Sbjct: 69 HPLIFNPLKAIHTDKAYGKIIEKCIKNDIAIYAAHTNVDVAKGGVNDLLAEAL 121
>ref|NP_588455.1| (NC_003421) similar to yeast ngg1-interacting factor 3
[Schizosaccharomyces pombe]
sp|O94404|YJ3C_SCHPO Hypothetical protein C126.12 in chromosome III
pir||T40916 ngg1-interacting factor 3 homolog - fission yeast
(Schizosaccharomyces pombe)
emb|CAA22481.1| (AL034490) similar to yeast ngg1-interacting factor 3
[Schizosaccharomyces pombe]
Length = 278
Score = 58.9 bits (141), Expect = 5e-08
Identities = 55/224 (24%), Positives = 99/224 (43%), Gaps = 26/224 (11%)
Query: 18 ELQESWDNSGLNVGSE--NSEFSEIVACLEITLKIALNAPQNAL---IITHHPLIFKPLK 72
+L +SWDN+GL + + + S ++ +++T K+A A N L I+ +HP+IF+ LK
Sbjct: 21 KLADSWDNTGLLLEAPFPRTNASSVLLTIDLTEKVAEEAISNKLVSSIVAYHPIIFRGLK 80
Query: 73 TLNDEIYPGNILKILIQKNVSVISMHTNFDKT--HLNKHFAHALLEFDGLVEKGLMLVKE 130
+ E L L + + V S HT D +N A + ++ + +
Sbjct: 81 AITMEDPQQRSLLKLAAEGIHVYSPHTAVDAAVDGVNDWLAQGIAGGRNNIKSVVPTQQN 140
Query: 131 NANIEFDA---------------LVKKIKSSLGVGSL-ACVKS--SQTIKDLAFVCGSGA 172
+ E + LV++ K G+ + C + I ++ GSG
Sbjct: 141 SVMAEAEGYGRICELKIPTTLRELVQRAKELTGLQYVQVCAPNGLDSHISKVSLCAGSGG 200
Query: 173 SMFSSLKAQSCLITGDVKYHDAMIAQSLGISLIDATHYYSERGF 216
S+ + A TG++ +H + A + GIS+I H +ERG+
Sbjct: 201 SVVMNTDA-DLYFTGELSHHQVLAAMAKGISVILCGHSNTERGY 243
>ref|NP_326287.1| (NC_002771) conserved hypothetical protein [Mycoplasma pulmonis]
sp|Q98QB0|Y456_MYCPU Hypothetical protein MYPU_4560
emb|CAC13629.1| (AL445564) conserved hypothetical protein [Mycoplasma pulmonis]
Length = 251
Score = 58.2 bits (139), Expect = 8e-08
Identities = 69/245 (28%), Positives = 104/245 (42%), Gaps = 22/245 (8%)
Query: 9 VVLNRLSPFELQESWDNSGLN--VGSENSE-FSEIVACLEIT---LKIALNAPQNALIIT 62
++L P E E WD G + V N E + IV L++T L+ A+ N LIIT
Sbjct: 3 LLLEEKYPIENCEPWDFCGFSYKVNFYNREDLTGIVVALDLTDHVLEKAIEEKAN-LIIT 61
Query: 63 HHPLIFKPLKTLNDEI----YPGNILKILIQKNVSVISMHTNFDKTHLNKHFAHALLEFD 118
HHP I+ L +E Y I L++ +SV S+HTNFD + A F
Sbjct: 62 HHPFIYN--NNLEEEFANFPYKEKIYNKLVKLKISVYSLHTNFDADKQGTSYWVAKEFFP 119
Query: 119 GLVEKGLMLVKENANIEFDALVKKIKSSL-----GVGSLACVKSSQTIKDLAFVCGSGAS 173
EK L K A I+ + ++K+ L G K+S + +AF GSG S
Sbjct: 120 D--EKPSPLGKYGALIKTKIELSELKAILRKKYSGPIMTNNKKASFSFNGVAFFAGSGDS 177
Query: 174 --MFSSLKAQSCLITGDVKYHDAMIAQSLGISLIDATHYYSERGFALIVAEILHSFNYLV 231
+ + +IT D K+ D + +L++ +H E +I + F V
Sbjct: 178 PEINEHTTKNNIIITSDTKWSDWIFLSQNKKTLVNISHQTEELFIKVIYFLLTKKFKKGV 237
Query: 232 TIENF 236
+ F
Sbjct: 238 NVSTF 242
>ref|NP_242246.1| (NC_002570) BH1380~unknown conserved protein [Bacillus halodurans]
sp|Q9KD39|YD80_BACHD Hypothetical protein BH1380
dbj|BAB05099.1| (AP001511) BH1380~unknown conserved protein [Bacillus halodurans]
Length = 372
Score = 58.2 bits (139), Expect = 8e-08
Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 7 VLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNA--LIITHH 64
V+ + R SP L D +G+ +G+ N ++ L++T + A + LI+ HH
Sbjct: 9 VIQLFERWSPKSLAVEGDKNGVLIGTLNKPIQRVLTALDVTESVIDEAIELGAELILAHH 68
Query: 65 PLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFDKT 104
P+IF+PL ++ + G I++ I+ ++++ + HTN D T
Sbjct: 69 PIIFRPLSSIRTDTAYGRIIEKAIKHDLTIYAAHTNLDIT 108
>ref|NP_216746.1| (NC_000962) hypothetical protein Rv2230c [Mycobacterium
tuberculosis H37Rv]
sp|Q10514|YM30_MYCTU Hypothetical protein Rv2230c
pir||B70777 hypothetical protein Rv2230c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA94653.1| (Z70692) hypothetical protein Rv2230c [Mycobacterium tuberculosis
H37Rv]
Length = 379
Score = 56.6 bits (135), Expect = 2e-07
Identities = 31/111 (27%), Positives = 56/111 (49%), Gaps = 2/111 (1%)
Query: 6 EVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNALIITHHP 65
+V+ VL++ P L +SWD+ GL G + + ++ T + PQ L++ HHP
Sbjct: 7 DVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGLLLVHHP 66
Query: 66 LIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFDKTH--LNKHFAHAL 114
L+ + + T+ G ++ LI+ S+ + HTN D ++ AHA+
Sbjct: 67 LLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAV 117
>ref|NP_617727.1| (NC_003552) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM06207.1| (AE010983) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 298
Score = 54.7 bits (130), Expect = 9e-07
Identities = 54/220 (24%), Positives = 105/220 (47%), Gaps = 17/220 (7%)
Query: 4 VKEVLVVLNRLSPFELQESWDNS--GLNVGSENSEFSEIVACLEITLKIALNAPQNA--L 59
+K+++ +L ++P EL + +D GL +G E S+ +I L+ + A + +
Sbjct: 3 LKKIVQILEEIAPPELADDFDKGRIGLILGLE-SDVKKIAIALDANFYVLKKAAKMKADM 61
Query: 60 IITHHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFDKTH--LNKHFAHALLEF 117
+ITHH LIF P+ ++ + + L++ ++ +S+ SMHTN+D+ +N A A L
Sbjct: 62 LITHHTLIFHPVNIISKSL--ADSLRVALENGISLYSMHTNYDRAEEGINDILA-ARLGL 118
Query: 118 DGLVEKGLMLVKENANIEFDALVKKIKSSLGVGSLACVKSSQTIKDLAFVCGSG-ASMFS 176
+ + + E L + L + + I+ + + GSG + +
Sbjct: 119 KNIRSPEIGRIGEIEPCSSTELATYVSDCLQT-PVIYAGEKEEIRKVMVIGGSGFRNEYL 177
Query: 177 SLKAQS---CLITGDVKYHDAMIAQSLGISLIDATHYYSE 213
L ++ I+ ++K HD + A + LIDA+HY +E
Sbjct: 178 ELARENRVDAFISSELK-HDILRAYE-DLCLIDASHYATE 215
>ref|NP_464977.1| (NC_003210) conserved hypothetical protein [Listeria monocytogenes
EGD-e]
sp|P53434|YE52_LISMO Hypothetical protein Lmo1452
gb|AAA62502.1| (U17284) orfA2; orfA2 forms an operon with orfA1 [Listeria
monocytogenes]
emb|CAC99530.1| (AL591979) conserved hypothetical protein [Listeria monocytogenes]
Length = 373
Score = 54.3 bits (129), Expect = 1e-06
Identities = 27/99 (27%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 6 EVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNA--LIITH 63
E ++ +++P +L D GL VG + + +I+ L++ ++ A + LII H
Sbjct: 8 EYTAIMEKIAPKKLAMEGDPIGLQVGDLSRKVRKIMFTLDVLEEVVDEAIEKKVDLIIAH 67
Query: 64 HPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFD 102
HP +++P + ++ G ++K LI+ +++V + HTN D
Sbjct: 68 HPFLYRPTQHIDTTTKQGKMIKKLIKHDITVFAAHTNLD 106
>ref|NP_470825.1| (NC_003212) conserved hypothetical protein [Listeria innocua]
sp|Q92BQ8|YE89_LISIN Hypothetical protein Lin1489
emb|CAC96720.1| (AL596168) conserved hypothetical protein [Listeria innocua]
Length = 373
Score = 54.3 bits (129), Expect = 1e-06
Identities = 26/99 (26%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 6 EVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNA--LIITH 63
E ++ +++P +L D GL VG + + +++ L++ ++ A + LII H
Sbjct: 8 EYTAIMEKIAPKKLAMEGDPIGLQVGDLSKKVRKVMFTLDVLEEVVDEAIEKRVDLIIAH 67
Query: 64 HPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFD 102
HP +++P + ++ G ++K LI+ +++V + HTN D
Sbjct: 68 HPFLYRPTQHIDTTTKQGKMIKKLIKHDITVFAAHTNLD 106
>ref|NP_634742.1| (NC_003901) hypothetical protein [Methanosarcina mazei Goe1]
gb|AAM32414.1| (AE013519) hypothetical protein [Methanosarcina mazei Goe1]
Length = 306
Score = 53.5 bits (127), Expect = 2e-06
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 4 VKEVLVVLNRLSPFELQESWDNS--GLNVGSENSEFSEIVACLEITLKIALNAPQNA--L 59
+ +++ VL ++P E+ + +D GL +G ++ E S+I L+ + A + +
Sbjct: 3 LSKIVQVLEEIAPPEIADDFDRGRIGLILGLKD-EVSKIAVALDANSCVLQKAAEIGADM 61
Query: 60 IITHHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFDKTH--LNKHFAHALLEF 117
+ITHH LIF P+ ++ + LKI ++ +S+ SMHTN+D+ +N A A L
Sbjct: 62 LITHHTLIFHPVNVISKTLAAS--LKIALENEISLYSMHTNYDRAEGGINDVLA-ASLGL 118
Query: 118 DGLVEKGLMLVKENANIEFDALVKKIKSSLGVGSLACVKSSQTIKDLAFVCGSGASMF-- 175
+ L + E L + L V + ++++ V +G S F
Sbjct: 119 KNITTLELGRIGEIETCSTSELAAHVSDCLQTP----VMYAGDRQEISRVMVAGGSCFRK 174
Query: 176 -----SSLKAQSCLITGDVKYHDAMIAQSLGISLIDATHYYSE 213
+ I+ ++K HD ++ + + LIDATHY +E
Sbjct: 175 EFLEIARENGVDAFISSELK-HD-VLREYEDLCLIDATHYATE 215
>ref|NP_302129.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
sp|O69481|YM30_MYCLE Hypothetical protein ML1639
pir||T44719 hypothetical protein MLCB1243.36 [imported] - Mycobacterium leprae
emb|CAA19217.1| (AL023635) hypothetical protein MLCB1243.36 [Mycobacterium leprae]
emb|CAC30590.1| (AL583922) conserved hypothetical protein [Mycobacterium leprae]
Length = 385
Score = 52.8 bits (125), Expect = 3e-06
Identities = 28/101 (27%), Positives = 48/101 (46%)
Query: 2 ALVKEVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNALII 61
A + +V+ VL+ P +SWD+ GL G I ++ T + P + L++
Sbjct: 3 ARLADVIEVLDHAYPPRFAQSWDSVGLVCGDPEDVLEAITIAVDATPAVIDEVPDSGLLL 62
Query: 62 THHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFD 102
HHPL+ + T+ G ++ LI+ S+ + HTN D
Sbjct: 63 VHHPLLLHGVDTVAVSTPKGALVHRLIRSGRSLFTAHTNAD 103
>ref|NP_601440.1| (NC_003450) COG0327:Uncharacterized ACR [Corynebacterium
glutamicum]
dbj|BAB99631.1| (AP005281) Uncharacterized ACR [Corynebacterium glutamicum ATCC
13032]
Length = 380
Score = 51.2 bits (121), Expect = 1e-05
Identities = 30/101 (29%), Positives = 49/101 (47%), Gaps = 2/101 (1%)
Query: 4 VKEVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNAL--II 61
V ++ +L+ P L ESWD GL G + L+ T +A A L +I
Sbjct: 6 VGDIRRILDEAYPPALAESWDKVGLICGDPTESVKRVGLALDCTQAVADKAVDMGLDMLI 65
Query: 62 THHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFD 102
HHPL+ + + ++ + G ++ LI+ V++ S HTN D
Sbjct: 66 IHHPLLLRGVTSVAADEPKGKVIHTLIRGGVALFSAHTNAD 106
>ref|NP_390396.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
sp|P54472|YQFO_BACSU Hypothetical protein yqfO
pir||A69954 conserved hypothetical protein yqfO - Bacillus subtilis
emb|CAB14447.1| (Z99116) similar to hypothetical proteins [Bacillus subtilis]
Length = 373
Score = 50.4 bits (119), Expect = 2e-05
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 5 KEVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNA--LIIT 62
++++ + + SP D GL +G+ N ++ L++ + A + LII
Sbjct: 8 QQIIQLFEQFSPKAYAVEGDKIGLQIGTLNKPIKNVMVTLDVLESVIDEAIEKEVDLIIA 67
Query: 63 HHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFD 102
HHP IF+ LK ++ + G +++ ++ +++V + HTN D
Sbjct: 68 HHPPIFRSLKHISTDQPAGRLIEKCLKHDIAVYAAHTNLD 107
>ref|NP_078185.1| (NC_002162) conserved hypothetical [Ureaplasma urealyticum]
sp|Q9PQE0|Y351_UREPA Hypothetical protein UU351
pir||G82901 conserved hypothetical UU351 [imported] - Ureaplasma urealyticum
gb|AAF30760.1|AE002132_4 (AE002132) conserved hypothetical [Ureaplasma urealyticum]
Length = 262
Score = 50.4 bits (119), Expect = 2e-05
Identities = 66/239 (27%), Positives = 109/239 (44%), Gaps = 20/239 (8%)
Query: 5 KEVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNA--LIIT 62
+++L L + E+WD +GL E + + L+IT + +A N LII+
Sbjct: 9 QDILNFLTKKYDLSKAEAWDKNGLFF-DEQQTINNVQIALDITDDVVNDAILNNANLIIS 67
Query: 63 HHPLIFKPLKTLNDEI-YPGNILKI-LIQKN-VSVISMHTNFDKTHLNKHFAHA----LL 115
HHPL + NDE+ Y NI I I+KN +S+I +HT FD + A LL
Sbjct: 68 HHPLFTN--QDSNDEVNYFVNIDLIEKIKKNKISLIHLHTAFDASANGMSMQMAKRLGLL 125
Query: 116 EFDGLVEKGLMLVKE---NANIEFDALVKKIKSSLGVGSLACVKSSQT-IKDLAFVCGSG 171
+ ++V E ++++ + + K K + V +T +K + + GSG
Sbjct: 126 NLKQDEQNPYLVVGELKLGVSVDYISRIIKQKFLSPIIKYNNVFRLETNLKKIGIIGGSG 185
Query: 172 ASMFSSLKAQ---SCLITGDVKYHDAMIAQSLGISLIDATHYYSERGFALIVAEILHSF 227
+ LIT D+KYH+ + AQ+ ++ID H SE F ++ + L F
Sbjct: 186 YKFADDAFNRYQLDMLITSDLKYHNWLDAQAKKQNIIDMNH-LSESIFIDVIYDELTKF 243
>ref|NP_585938.1| (NC_003234) similarity to NGG1-INTERACTING FACTOR 3
[Encephalitozoon cuniculi]
emb|CAD25542.1| (AL590447) similarity to NGG1-INTERACTING FACTOR 3 [Encephalitozoon
cuniculi]
Length = 242
Score = 50.4 bits (119), Expect = 2e-05
Identities = 56/253 (22%), Positives = 116/253 (45%), Gaps = 26/253 (10%)
Query: 4 VKEVLVVLNRLSPFELQES-WDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNAL--I 60
+ EV ++R + ++ WDN G+ V S + +I+ +++T + + +
Sbjct: 3 IHEVSKAIDRFASLRRAKTDWDNVGVIVDSGTQD-KKILLTIDLTEPVLEECIHLGVKNV 61
Query: 61 ITHHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFDKTHLNKHFAHALLEFDGL 120
+ +HP+IFK +K L + +I+ I+ ++V + H+ D +N + + +
Sbjct: 62 VAYHPIIFKAVKKLGSK---ESIVIGCIKNGINVFTPHSALDPL-MNTYVYN-------M 110
Query: 121 VEKGLMLVKENANIEFDAL---VKKIKSSLGVGSLA-CVKSSQTIKDLA--FVCGSGASM 174
+ G K+N + ++ +K G+ S C+ T++ + G GA+
Sbjct: 111 INSGPFFYKKNCGPNTSTIGNAIRILKERSGLESFRICLAREHTMESVPEFMHVGVGATF 170
Query: 175 FSSLKAQSCLITGDVKYHDAMIAQSLGISLIDATHYYSER----GFALIVAEILHSFNYL 230
+ L S +ITG++ +HD + + G S+I H SER + + E L +
Sbjct: 171 RNVLLKNSIVITGEMSHHDLLSCIANGASVILMEHSNSERICLGHISAKLKEELPEYEIF 230
Query: 231 VTIENFKNPLQII 243
V+ +N K+P+ I+
Sbjct: 231 VS-KNDKDPVTIL 242
>dbj|BAA12492.1| (D84432) YqfO [Bacillus subtilis]
Length = 279
Score = 50.4 bits (119), Expect = 2e-05
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 5 KEVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLEITLKIALNAPQNA--LIIT 62
++++ + + SP D GL +G+ N ++ L++ + A + LII
Sbjct: 8 QQIIQLFEQFSPKAYAVEGDKIGLQIGTLNKPIKNVMVTLDVLESVIDEAIEKEVDLIIA 67
Query: 63 HHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFD 102
HHP IF+ LK ++ + G +++ ++ +++V + HTN D
Sbjct: 68 HHPPIFRSLKHISTDQPAGRLIEKCLKHDIAVYAAHTNLD 107
>ref|NP_068596.1| (NM_021824) NIF3 (Ngg1 interacting factor 3, S.pombe homolog)-like
1; amyotrophic lateral sclerosis 2 (juvenile) chromosome
region, candidate 1 [Homo sapiens]
gb|AAG14952.1|AF182416_1 (AF182416) MDS015 [Homo sapiens]
Length = 351
Score = 48.9 bits (115), Expect = 5e-05
Identities = 33/105 (31%), Positives = 57/105 (53%), Gaps = 9/105 (8%)
Query: 143 IKSSLGVGSLACVKSSQTIKDLAFVCGSGASMFSSLKAQSCLITGDVKYHDAMIAQSLGI 202
I+ +LGVG +K +A GSG+S+ ++A L TG++ +HD + A S GI
Sbjct: 252 IRLALGVGRTL----ESQVKVVALCAGSGSSVLQGVEADLYL-TGEMSHHDTLDAASQGI 306
Query: 203 SLIDATHYYSERGFALIVAEILHSF----NYLVTIENFKNPLQII 243
++I H +ERGF + ++L S ++ E ++PLQ++
Sbjct: 307 NVILCEHSNTERGFLSDLRDMLDSHLENKINIILSETDRDPLQVV 351
Score = 43.5 bits (101), Expect = 0.002
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 4 VKEVLVVLNRLSPFELQESWDNSGLNVG-SENSEFSEIVACLEITLKIALNAPQNA--LI 60
+K +L LN + ESWDN GL V S + + ++T ++ Q LI
Sbjct: 3 LKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKADLI 62
Query: 61 ITHHPLIFKPLKTLNDEIYPGNILKI-LIQKNVSVISMHTNFD 102
+++HP IF+P+K +N E L I ++ V + S HT +D
Sbjct: 63 LSYHPPIFRPMKRINLEHMGRERLVIRALENRVGIYSPHTAYD 105
>sp|Q9GZT8|NF3L_HUMAN NIF3-like protein 1 (Amyotrophic lateral sclerosis 2 chromosomal
region candidate gene protein 1) (My018 protein)
(MDS015)
dbj|BAB14551.1| (AK023378) unnamed protein product [Homo sapiens]
gb|AAG43131.1|AF060513_1 (AF060513) My018 protein [Homo sapiens]
dbj|BAB32499.1| (AB038949) amyotrophic lateral sclerosis 2 [Homo sapiens]
Length = 350
Score = 48.9 bits (115), Expect = 5e-05
Identities = 33/105 (31%), Positives = 57/105 (53%), Gaps = 9/105 (8%)
Query: 143 IKSSLGVGSLACVKSSQTIKDLAFVCGSGASMFSSLKAQSCLITGDVKYHDAMIAQSLGI 202
I+ +LGVG +K +A GSG+S+ ++A L TG++ +HD + A S GI
Sbjct: 251 IRLALGVGRTL----ESQVKVVALCAGSGSSVLQGVEADLYL-TGEMSHHDTLDAASQGI 305
Query: 203 SLIDATHYYSERGFALIVAEILHSF----NYLVTIENFKNPLQII 243
++I H +ERGF + ++L S ++ E ++PLQ++
Sbjct: 306 NVILCEHSNTERGFLSDLRDMLDSHLENKINIILSETDRDPLQVV 350
Score = 43.9 bits (102), Expect = 0.002
Identities = 28/102 (27%), Positives = 50/102 (48%), Gaps = 3/102 (2%)
Query: 4 VKEVLVVLNRLSPFELQESWDNSGLNVG-SENSEFSEIVACLEITLKIALNAPQNA--LI 60
+K +L LN + ESWDN GL V S + + ++T ++ Q LI
Sbjct: 3 LKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKADLI 62
Query: 61 ITHHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFD 102
+++HP IF+P+K + + ++ ++ V + S HT +D
Sbjct: 63 LSYHPPIFRPMKRITWNTWKERLVIRALENRVGIYSPHTAYD 104
>ref|XP_027963.1| (XM_027963) amyotrophic lateral sclerosis 2 (juvenile) chromosome
region, candidate 1 [Homo sapiens]
gb|AAG44846.1|AF283538_1 (AF283538) NIF3L1 protein [Homo sapiens]
gb|AAH07654.1|AAH07654 (BC007654) Similar to NIF3 (Ngg1 interacting factor 3, S.pombe
homolog)-like 1 [Homo sapiens]
Length = 377
Score = 48.9 bits (115), Expect = 5e-05
Identities = 33/105 (31%), Positives = 57/105 (53%), Gaps = 9/105 (8%)
Query: 143 IKSSLGVGSLACVKSSQTIKDLAFVCGSGASMFSSLKAQSCLITGDVKYHDAMIAQSLGI 202
I+ +LGVG +K +A GSG+S+ ++A L TG++ +HD + A S GI
Sbjct: 278 IRLALGVGRTL----ESQVKVVALCAGSGSSVLQGVEADLYL-TGEMSHHDTLDAASQGI 332
Query: 203 SLIDATHYYSERGFALIVAEILHSF----NYLVTIENFKNPLQII 243
++I H +ERGF + ++L S ++ E ++PLQ++
Sbjct: 333 NVILCEHSNTERGFLSDLRDMLDSHLENKINIILSETDRDPLQVV 377
Score = 43.9 bits (102), Expect = 0.002
Identities = 28/102 (27%), Positives = 50/102 (48%), Gaps = 3/102 (2%)
Query: 4 VKEVLVVLNRLSPFELQESWDNSGLNVG-SENSEFSEIVACLEITLKIALNAPQNA--LI 60
+K +L LN + ESWDN GL V S + + ++T ++ Q LI
Sbjct: 30 LKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKADLI 89
Query: 61 ITHHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFD 102
+++HP IF+P+K + + ++ ++ V + S HT +D
Sbjct: 90 LSYHPPIFRPMKRITWNTWKERLVIRALENRVGIYSPHTAYD 131
>sp|Q9EQ80|NF3L_MOUSE NIF3-like protein 1
Length = 350
Score = 47.4 bits (111), Expect = 1e-04
Identities = 38/134 (28%), Positives = 67/134 (49%), Gaps = 13/134 (9%)
Query: 114 LLEFDGLVEKGLMLVKENANIEFDALVKKIKSSLGVGSLACVKSSQTIKDLAFVCGSGAS 173
L D V +M+ + +++ L + +LGVG +K +A GSG S
Sbjct: 226 LCTLDESVSLAIMIERIKTHLKLSHL----RLALGVGRTL----ESQVKVVALCAGSGGS 277
Query: 174 MFSSLKAQSCLITGDVKYHDAMIAQSLGISLIDATHYYSERGFALIVAEIL--HSFN--Y 229
+ ++A L TG++ +HD + A S GI++I H +ERGF + E+L H N
Sbjct: 278 VLQGVEADLYL-TGEMSHHDVLDAASKGINVILCEHSNTERGFLSELQEMLGVHFENKIN 336
Query: 230 LVTIENFKNPLQII 243
++ E ++PL+++
Sbjct: 337 IILSETDRDPLRVV 350
Score = 43.1 bits (100), Expect = 0.003
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 4 VKEVLVVLNRLSPFELQESWDNSGLNVG-SENSEFSEIVACLEITLKIALNAPQNA--LI 60
+K +L LN + ESWDN GL V S + + ++T ++ A Q I
Sbjct: 3 LKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMDEALQKKADFI 62
Query: 61 ITHHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFD 102
+++HP IF+P+K + + + ++ ++ V+V S HT +D
Sbjct: 63 LSYHPPIFRPMKHITWKTWKECLVIRALENRVAVYSPHTAYD 104
>ref|NP_075364.1| (NM_022988) Ngg1 interacting factor 3-like 1 (S. pombe); Ngg1
interacting factor 3 homolog (S. pombe)-like 1 [Mus
musculus]
gb|AAG45961.1|AF284439_1 (AF284439) NIF3L1 [Mus musculus]
Length = 376
Score = 47.4 bits (111), Expect = 1e-04
Identities = 38/134 (28%), Positives = 67/134 (49%), Gaps = 13/134 (9%)
Query: 114 LLEFDGLVEKGLMLVKENANIEFDALVKKIKSSLGVGSLACVKSSQTIKDLAFVCGSGAS 173
L D V +M+ + +++ L + +LGVG +K +A GSG S
Sbjct: 252 LCTLDESVSLAIMIERIKTHLKLSHL----RLALGVGRTL----ESQVKVVALCAGSGGS 303
Query: 174 MFSSLKAQSCLITGDVKYHDAMIAQSLGISLIDATHYYSERGFALIVAEIL--HSFN--Y 229
+ ++A L TG++ +HD + A S GI++I H +ERGF + E+L H N
Sbjct: 304 VLQGVEADLYL-TGEMSHHDVLDAASKGINVILCEHSNTERGFLSELQEMLGVHFENKIN 362
Query: 230 LVTIENFKNPLQII 243
++ E ++PL+++
Sbjct: 363 IILSETDRDPLRVV 376
Score = 43.1 bits (100), Expect = 0.003
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 4 VKEVLVVLNRLSPFELQESWDNSGLNVG-SENSEFSEIVACLEITLKIALNAPQNA--LI 60
+K +L LN + ESWDN GL V S + + ++T ++ A Q I
Sbjct: 29 LKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMDEALQKKADFI 88
Query: 61 ITHHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFD 102
+++HP IF+P+K + + + ++ ++ V+V S HT +D
Sbjct: 89 LSYHPPIFRPMKHITWKTWKECLVIRALENRVAVYSPHTAYD 130
>dbj|BAB27769.1| (AK011670) data source:SPTR, source key:Q9EQ80,
evidence:ISS~putative~similar to NIF3L1 [Mus musculus]
Length = 376
Score = 47.4 bits (111), Expect = 1e-04
Identities = 38/134 (28%), Positives = 67/134 (49%), Gaps = 13/134 (9%)
Query: 114 LLEFDGLVEKGLMLVKENANIEFDALVKKIKSSLGVGSLACVKSSQTIKDLAFVCGSGAS 173
L D V +M+ + +++ L + +LGVG +K +A GSG S
Sbjct: 252 LCTLDESVSLAIMIERIKTHLKLSHL----RLALGVGRTL----ESQVKVVALCAGSGGS 303
Query: 174 MFSSLKAQSCLITGDVKYHDAMIAQSLGISLIDATHYYSERGFALIVAEIL--HSFN--Y 229
+ ++A L TG++ +HD + A S GI++I H +ERGF + E+L H N
Sbjct: 304 VLQGVEADLYL-TGEMSHHDVLDAASKGINVILCEHSNTERGFLSELQEMLGVHFENKIN 362
Query: 230 LVTIENFKNPLQII 243
++ E ++PL+++
Sbjct: 363 IILSETDRDPLRVV 376
Score = 43.1 bits (100), Expect = 0.003
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 4 VKEVLVVLNRLSPFELQESWDNSGLNVG-SENSEFSEIVACLEITLKIALNAPQNA--LI 60
+K +L LN + ESWDN GL V S + + ++T ++ A Q I
Sbjct: 29 LKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMDEALQKKADFI 88
Query: 61 ITHHPLIFKPLKTLNDEIYPGNILKILIQKNVSVISMHTNFD 102
+++HP IF+P+K + + + ++ ++ V+V S HT +D
Sbjct: 89 LSYHPPIFRPMKHITWKTWKECLVIRALENRVAVYSPHTAYD 130
>gb|AAA87434.1| (U19364) unknown [Methanothermobacter thermautotrophicus]
Length = 221
Score = 47.4 bits (111), Expect = 1e-04
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 131 NANIEFDALVKKIKSSLGVGSLACVKSSQTIKDLAFVCGSGASMFSSL-----KAQSCLI 185
+ +I D L++++ S L S+ V ++ I +A V G G S + + S I
Sbjct: 101 SGDIYLDELLERV-SGLNPSSIRIVNPAENIDRVAVVSGFGLSQEDLIIRAFNEEVSAFI 159
Query: 186 TGDVKYHDAMIAQSLGISLIDATHYYSERGFALIVAEILHSFNYLVTIENFKNPLQ 241
+GD+ + A++A++L I+L+DA HY +E L + +I+ F I + P Q
Sbjct: 160 SGDLTHRCAVLARNLQITLVDAGHYSTEMPGLLRLRDIIEDFGITADILDTGTPWQ 215
>dbj|BAB23102.1| (AK003978) data source:SPTR, source key:Q9EQ80,
evidence:ISS~putative~similar to NIF3L1 [Mus musculus]
Length = 159
Score = 47.4 bits (111), Expect = 1e-04
Identities = 38/134 (28%), Positives = 67/134 (49%), Gaps = 13/134 (9%)
Query: 114 LLEFDGLVEKGLMLVKENANIEFDALVKKIKSSLGVGSLACVKSSQTIKDLAFVCGSGAS 173
L D V +M+ + +++ L + +LGVG +K +A GSG S
Sbjct: 35 LCTLDESVSLAIMIERIKTHLKLSHL----RLALGVGRTL----ESQVKVVALCAGSGGS 86
Query: 174 MFSSLKAQSCLITGDVKYHDAMIAQSLGISLIDATHYYSERGFALIVAEIL--HSFN--Y 229
+ ++A L TG++ +HD + A S GI++I H +ERGF + E+L H N
Sbjct: 87 VLQGVEADLYL-TGEMSHHDVLDAASKGINVILCEHSNTERGFLSELQEMLGVHFENKIN 145
Query: 230 LVTIENFKNPLQII 243
++ E ++PL+++
Sbjct: 146 IILSETDRDPLRVV 159
>ref|NP_296762.1| (NC_002620) conserved hypothetical protein [Chlamydia muridarum]
sp|Q9PKS8|Y384_CHLMU Hypothetical protein TC0384
pir||B81709 conserved hypothetical protein TC0384 [imported] - Chlamydia
muridarum (strain Nigg)
gb|AAF39241.1| (AE002305) conserved hypothetical protein [Chlamydia muridarum]
Length = 251
Score = 43.5 bits (101), Expect = 0.002
Identities = 53/225 (23%), Positives = 91/225 (39%), Gaps = 17/225 (7%)
Query: 4 VKEVLVVLNRLSPFELQESWDNSGLNVGSENSEFSEIVACLE---ITLKIALNAPQNALI 60
V ++L VLN L EL + +GL VG + +I + T++ A+ N L+
Sbjct: 3 VADLLHVLNELLYPELFNDYGPNGLQVGDAQAPVRKIAVAVTADLATIEKAIACESNVLL 62
Query: 61 ITHHPLIFKPLK-TLNDEIYPGNILKILIQKNVSVISMHTNFD-------KTHLNKHFAH 112
+ HH L +K + + +Y ++ LI+ N+ +I+ H D + K
Sbjct: 63 V-HHGLFWKGMPYPITGMLY--QRMQRLIENNIQLIAYHLPLDAHPEVGNNWKVAKDLGW 119
Query: 113 ALLEFDGLVEKGLMLVKENANIEFDALVKKIKSSLGVGSLA-CVKSSQTIKDLAFVCGSG 171
LE G + L + I V ++ S LA + ++I A + G
Sbjct: 120 ERLESFGSTKPSLGVKGVFPEIGIHDFVSQLSSYYQAPVLAKALGGKESISSAALISGGA 179
Query: 172 ASMFSSLKAQ--SCLITGDVKYHDAMIAQSLGISLIDATHYYSER 214
S K+Q C ITG+ +A L I+ + H +E+
Sbjct: 180 YKEISEAKSQEVDCFITGNFDEPAWSLAHELAINFLAFGHTATEK 224
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.136 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,044,037
Number of Sequences: 1026957
Number of extensions: 5320509
Number of successful extensions: 12897
Number of sequences better than 1.0e-02: 51
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 12822
Number of HSP's gapped (non-prelim): 71
length of query: 243
length of database: 324,149,939
effective HSP length: 118
effective length of query: 125
effective length of database: 202,969,013
effective search space: 25371126625
effective search space used: 25371126625
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 96 (41.6 bits)