BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644727|ref|NP_206897.1| hypothetical protein
[Helicobacter pylori 26695]
(237 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206897.1| (NC_000915) hypothetical protein [Helicoba... 461 e-129
ref|NP_222810.1| (NC_000921) putative [Helicobacter pylori ... 444 e-124
>ref|NP_206897.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64532 hypothetical protein HP0097 - Helicobacter pylori (strain 26695)
gb|AAD07171.1| (AE000531) H. pylori predicted coding region HP0097 [Helicobacter
pylori 26695]
Length = 237
Score = 461 bits (1187), Expect = e-129
Identities = 237/237 (100%), Positives = 237/237 (100%)
Query: 1 MKKIVLVAIALLMSACASYKITPEHVTSYNNGIQVMTSTQAKSKVQLEIAQSKLKGLNES 60
MKKIVLVAIALLMSACASYKITPEHVTSYNNGIQVMTSTQAKSKVQLEIAQSKLKGLNES
Sbjct: 1 MKKIVLVAIALLMSACASYKITPEHVTSYNNGIQVMTSTQAKSKVQLEIAQSKLKGLNES 60
Query: 61 PLVLYVAAQVIEGSPVVFSRKAISVSINQTNLPVLSLRQVMKSSFDFEGILQSFNIAVPT 120
PLVLYVAAQVIEGSPVVFSRKAISVSINQTNLPVLSLRQVMKSSFDFEGILQSFNIAVPT
Sbjct: 61 PLVLYVAAQVIEGSPVVFSRKAISVSINQTNLPVLSLRQVMKSSFDFEGILQSFNIAVPT 120
Query: 121 TPIDNVNMITPPMFYYGQGGFLAYNGMMYGGMGMYGPGFGMMMMDDVEEQEVMQESRQAL 180
TPIDNVNMITPPMFYYGQGGFLAYNGMMYGGMGMYGPGFGMMMMDDVEEQEVMQESRQAL
Sbjct: 121 TPIDNVNMITPPMFYYGQGGFLAYNGMMYGGMGMYGPGFGMMMMDDVEEQEVMQESRQAL 180
Query: 181 KILAINYLKNNTLNVESKAKGGFVVVDTKNLKTPGVVVVKVFLEDEIHTFKIDISKM 237
KILAINYLKNNTLNVESKAKGGFVVVDTKNLKTPGVVVVKVFLEDEIHTFKIDISKM
Sbjct: 181 KILAINYLKNNTLNVESKAKGGFVVVDTKNLKTPGVVVVKVFLEDEIHTFKIDISKM 237
>ref|NP_222810.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71974 hypothetical protein jhp0089 - Helicobacter pylori (strain J99)
gb|AAD05670.1| (AE001448) putative [Helicobacter pylori J99]
Length = 237
Score = 444 bits (1143), Expect = e-124
Identities = 225/237 (94%), Positives = 232/237 (96%)
Query: 1 MKKIVLVAIALLMSACASYKITPEHVTSYNNGIQVMTSTQAKSKVQLEIAQSKLKGLNES 60
M+KIVLVAIALL+S CASYKITPEHVTSYNNGIQVMTSTQA+SKVQLEIAQSKLKGLNES
Sbjct: 1 MRKIVLVAIALLISGCASYKITPEHVTSYNNGIQVMTSTQARSKVQLEIAQSKLKGLNES 60
Query: 61 PLVLYVAAQVIEGSPVVFSRKAISVSINQTNLPVLSLRQVMKSSFDFEGILQSFNIAVPT 120
PLVLYVAAQV+EG PVVFSRKAISVSINQTNLPVLSLRQVMKSSFDFEGILQSFNI+VPT
Sbjct: 61 PLVLYVAAQVLEGKPVVFSRKAISVSINQTNLPVLSLRQVMKSSFDFEGILQSFNISVPT 120
Query: 121 TPIDNVNMITPPMFYYGQGGFLAYNGMMYGGMGMYGPGFGMMMMDDVEEQEVMQESRQAL 180
PIDN+NMITPPMFYYGQG FLAYNGMMYGGMGMYGPGFGMMMMDDVEEQEVMQESRQAL
Sbjct: 121 APIDNINMITPPMFYYGQGSFLAYNGMMYGGMGMYGPGFGMMMMDDVEEQEVMQESRQAL 180
Query: 181 KILAINYLKNNTLNVESKAKGGFVVVDTKNLKTPGVVVVKVFLEDEIHTFKIDISKM 237
KILAINYLK NTLNVE+KAKGGFVVVDTKNLKTPGVVVVKVFLEDEIHTFKIDISKM
Sbjct: 181 KILAINYLKKNTLNVENKAKGGFVVVDTKNLKTPGVVVVKVFLEDEIHTFKIDISKM 237
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.318 0.134 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,120,383
Number of Sequences: 1026957
Number of extensions: 5579908
Number of successful extensions: 13913
Number of sequences better than 1.0e-02: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13911
Number of HSP's gapped (non-prelim): 2
length of query: 237
length of database: 324,149,939
effective HSP length: 117
effective length of query: 120
effective length of database: 203,995,970
effective search space: 24479516400
effective search space used: 24479516400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 95 (41.2 bits)