BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645579|ref|NP_207755.1| hypothetical protein
[Helicobacter pylori 26695]
(447 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207755.1| (NC_000915) hypothetical protein [Helicoba... 889 0.0
ref|NP_223615.1| (NC_000921) putative [Helicobacter pylori ... 393 e-108
ref|NP_207758.1| (NC_000915) conserved hypothetical protein... 79 1e-13
ref|NP_223614.1| (NC_000921) putative [Helicobacter pylori ... 72 1e-11
ref|NP_281602.1| (NC_002163) putative ATP /GTP binding prot... 64 4e-09
ref|NP_623478.1| (NC_003869) predicted GTPases (dynamin-rel... 62 2e-08
ref|NP_655473.1| (NC_003995) MMR_HSR1, GTPase of unknown fu... 59 2e-07
sp|P40983|YOR6_CALSR Hypothetical protein in XYNA 3'region ... 59 2e-07
ref|NP_223619.1| (NC_000921) putative [Helicobacter pylori ... 54 3e-06
ref|NP_242566.1| (NC_002570) BH1700~unknown conserved prote... 54 4e-06
ref|NP_176519.1| (NM_105009) hypothetical protein [Arabidop... 52 2e-05
ref|NP_390085.1| (NC_000964) ypbR [Bacillus subtilis] >gi|1... 51 2e-05
dbj|BAA90654.1| (AB003153) OrfZ [Paenibacillus polymyxa] 50 5e-05
ref|NP_488454.1| (NC_003272) unknown protein [Nostoc sp. PC... 50 7e-05
sp|O33600|RA50_SULAC DNA double-strand break repair rad50 A... 48 2e-04
ref|NP_180608.1| (NM_128602) unknown protein [Arabidopsis t... 48 2e-04
ref|NP_126901.1| (NC_000868) purine NTPase, putative [Pyroc... 46 0.001
ref|NP_248250.1| (NC_000909) M. jannaschii predicted coding... 45 0.001
ref|NP_377206.1| (NC_003106) 311aa long conserved hypotheti... 45 0.002
ref|XP_140750.1| (XM_140750) similar to hypothetical protei... 43 0.009
ref|NP_182141.1| (NM_130180) hypothetical protein [Arabidop... 43 0.009
gb|AAL47462.1| (AY069912) At2g46180/T3F17.17 [Arabidopsis t... 43 0.009
ref|NP_563924.1| (NM_101194) putative nuclear matrix consti... 43 0.009
>ref|NP_207755.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64640 hypothetical protein HP0963 - Helicobacter pylori (strain 26695)
gb|AAD08015.1| (AE000605) H. pylori predicted coding region HP0963 [Helicobacter
pylori 26695]
Length = 447
Score = 889 bits (2296), Expect = 0.0
Identities = 447/447 (100%), Positives = 447/447 (100%)
Query: 1 MSVNFFKGIFNDNSRAENHQDNHQNNHQVGLKERYDLIARILNARIENEGLEEYQSVLDN 60
MSVNFFKGIFNDNSRAENHQDNHQNNHQVGLKERYDLIARILNARIENEGLEEYQSVLDN
Sbjct: 1 MSVNFFKGIFNDNSRAENHQDNHQNNHQVGLKERYDLIARILNARIENEGLEEYQSVLDN 60
Query: 61 EFLEFASGVDSLKEKEIALLTLQEIQKELQLVASYPSLFQKTIVAVGGGFSAGKSTFLNN 120
EFLEFASGVDSLKEKEIALLTLQEIQKELQLVASYPSLFQKTIVAVGGGFSAGKSTFLNN
Sbjct: 61 EFLEFASGVDSLKEKEIALLTLQEIQKELQLVASYPSLFQKTIVAVGGGFSAGKSTFLNN 120
Query: 121 LLGLKLKLPEDMNPTTAIPTYCLKGKREVLMGFSQNGGMVELPHLAFDHQFLNSLGFNLK 180
LLGLKLKLPEDMNPTTAIPTYCLKGKREVLMGFSQNGGMVELPHLAFDHQFLNSLGFNLK
Sbjct: 121 LLGLKLKLPEDMNPTTAIPTYCLKGKREVLMGFSQNGGMVELPHLAFDHQFLNSLGFNLK 180
Query: 181 EIMPFMLLSAPSVPFEFLCFIDTPGFNSAKQGYTGGDKEASKESLKHAKHILWLISCESG 240
EIMPFMLLSAPSVPFEFLCFIDTPGFNSAKQGYTGGDKEASKESLKHAKHILWLISCESG
Sbjct: 181 EIMPFMLLSAPSVPFEFLCFIDTPGFNSAKQGYTGGDKEASKESLKHAKHILWLISCESG 240
Query: 241 EIHEDDLEYLQELYEEGKQVFIVLSRADRRTKRQLEEVVIKIKETLKDNGIEFLGIGAYS 300
EIHEDDLEYLQELYEEGKQVFIVLSRADRRTKRQLEEVVIKIKETLKDNGIEFLGIGAYS
Sbjct: 241 EIHEDDLEYLQELYEEGKQVFIVLSRADRRTKRQLEEVVIKIKETLKDNGIEFLGIGAYS 300
Query: 301 STRYQEYKEFSEKSKVFNSLEEFLMKLNQRSEKQNEILGYLYEVHSMYEKAIEQDANQFK 360
STRYQEYKEFSEKSKVFNSLEEFLMKLNQRSEKQNEILGYLYEVHSMYEKAIEQDANQFK
Sbjct: 301 STRYQEYKEFSEKSKVFNSLEEFLMKLNQRSEKQNEILGYLYEVHSMYEKAIEQDANQFK 360
Query: 361 RYQSELHSVRLDLMQKGFDDFSDKIFRRIENLEKEFSEQERSKRESLARLNEVIDLFKEG 420
RYQSELHSVRLDLMQKGFDDFSDKIFRRIENLEKEFSEQERSKRESLARLNEVIDLFKEG
Sbjct: 361 RYQSELHSVRLDLMQKGFDDFSDKIFRRIENLEKEFSEQERSKRESLARLNEVIDLFKEG 420
Query: 421 IDKVFDRVSAFTWEKYKEQNDDEEDDD 447
IDKVFDRVSAFTWEKYKEQNDDEEDDD
Sbjct: 421 IDKVFDRVSAFTWEKYKEQNDDEEDDD 447
>ref|NP_223615.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71873 hypothetical protein jhp0897 - Helicobacter pylori (strain J99)
gb|AAD06480.1| (AE001519) putative [Helicobacter pylori J99]
Length = 226
Score = 393 bits (1009), Expect = e-108
Identities = 200/231 (86%), Positives = 207/231 (89%), Gaps = 7/231 (3%)
Query: 1 MSVNFFKGIFNDNSRAENHQDNHQNNHQVGLKERYDLIARILNARIENEGLEEYQSVLDN 60
MS+NFF F+ +NH N V LKERYDLIARILNA+ NEGLEEYQS+L N
Sbjct: 1 MSINFFNDKFSTT-------ENHHNIEPVSLKERYDLIARILNAKTSNEGLEEYQSILAN 53
Query: 61 EFLEFASGVDSLKEKEIALLTLQEIQKELQLVASYPSLFQKTIVAVGGGFSAGKSTFLNN 120
EFL+FASGVDSLKEKEIALL LQEIQKELQLVASYPSLFQKTIVAVGGGFSAGKSTFLNN
Sbjct: 54 EFLKFASGVDSLKEKEIALLMLQEIQKELQLVASYPSLFQKTIVAVGGGFSAGKSTFLNN 113
Query: 121 LLGLKLKLPEDMNPTTAIPTYCLKGKREVLMGFSQNGGMVELPHLAFDHQFLNSLGFNLK 180
LLGLKLKLPEDMNPTTAIPTYCLKG+REVLMGFSQNGGMVELPHLAFDHQFL SLGFNLK
Sbjct: 114 LLGLKLKLPEDMNPTTAIPTYCLKGEREVLMGFSQNGGMVELPHLAFDHQFLKSLGFNLK 173
Query: 181 EIMPFMLLSAPSVPFEFLCFIDTPGFNSAKQGYTGGDKEASKESLKHAKHI 231
EIMPFMLLSAPSVPFEFLCFIDTPGFN A QGYTGGDKEASKESLKHAKHI
Sbjct: 174 EIMPFMLLSAPSVPFEFLCFIDTPGFNPANQGYTGGDKEASKESLKHAKHI 224
>ref|NP_207758.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||F64640 conserved hypothetical protein HP0966 - Helicobacter pylori
(strain 26695)
gb|AAD08010.1| (AE000605) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 549
Score = 79.0 bits (193), Expect = 1e-13
Identities = 96/386 (24%), Positives = 164/386 (41%), Gaps = 55/386 (14%)
Query: 62 FLEFASGV-DSLKEKEIALLTLQEIQKELQLVASYPSLFQKTIVAVGGGFSAGKSTFLNN 120
F+EF V + LKE EI + +Q Q+ ++ V G FSAGKST LN
Sbjct: 10 FVEFLEQVLEVLKEVEIDKTECSTLLASVQK--------QQLVIPVVGNFSAGKSTLLNR 61
Query: 121 LLGLKLKLPEDMNPTTAIPTYCLKGKREVLMGFSQNGGMVE---LPHLAFDHQFLNSLGF 177
LG + LP + P T++ T +E + FS N E L +F+ N+ +
Sbjct: 62 FLGSSV-LPTGITPETSLATELHYSAKERIEAFSNNDEKTESFELNEQSFEAIKENATKY 120
Query: 178 NLKEIMPFMLLSAPSVPFEFLCFIDTPGFNSAKQGYTGGDKEASKESLKHAKHILWLISC 237
+ ++ S P L F+D PGF+S +T A E L+ H + L S
Sbjct: 121 SYLKVYLNNEALKNSAP---LVFVDMPGFDSPISSHT----HAILEYLERGVHFVILTSV 173
Query: 238 ESGEIHEDDLEYLQELYEEGKQVFIVLSRADRRTKRQLEEVVIKIKETLKDNGIEFLGIG 297
E G + + + L+ L E K + +LS+ + RT Q+ E+ I++ ++D+ ++
Sbjct: 174 EEGNLTKRMVRELKNLLEFDKGLSFILSKTNLRTPSQVGEISHYIQDQIQDH-LDLTTHL 232
Query: 298 AYSSTRYQEYKEFSEK---SKVFNSLEEFLMKLN-QRSEKQNEILGYLYEVHSMYEKAIE 353
+S+ E ++K K+F++L +L +L S+ QN + + EKA+E
Sbjct: 233 IHSNKDNNALLEVADKIDAEKLFSAL--YLKRLKFLNSKLQNSLKSVMESFDYSKEKALE 290
Query: 354 QDANQFKRYQSELHSVRLDLMQKGFDDFSDKIFRRIENLEKEFS------------EQER 401
+ + + G D + NLE+E+S E+ R
Sbjct: 291 E----------------IQALDLGVKDIEKTYEKLRANLEEEYSSVAVGSVVKKVVEEVR 334
Query: 402 SKRESLARLNEVIDLFKEGIDKVFDR 427
++ LA L + F I+ + +
Sbjct: 335 DQKSYLASLINKPNEFNSEIESIMQQ 360
>ref|NP_223614.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71873 hypothetical protein jhp0896 - Helicobacter pylori (strain J99)
gb|AAD06474.1| (AE001519) putative [Helicobacter pylori J99]
Length = 230
Score = 72.4 bits (176), Expect = 1e-11
Identities = 32/39 (82%), Positives = 36/39 (92%)
Query: 409 RLNEVIDLFKEGIDKVFDRVSAFTWEKYKEQNDDEEDDD 447
RLNEVI LFKE +DKVFDRVSAFTWEKYK +N+DEEDD+
Sbjct: 2 RLNEVIGLFKESVDKVFDRVSAFTWEKYKAKNEDEEDDE 40
>ref|NP_281602.1| (NC_002163) putative ATP /GTP binding protein [Campylobacter
jejuni]
pir||B81385 probable ATP /GTP binding protein Cj0412 [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB74248.1| (AL139075) putative ATP /GTP binding protein [Campylobacter jejuni]
Length = 609
Score = 63.9 bits (154), Expect = 4e-09
Identities = 87/364 (23%), Positives = 155/364 (41%), Gaps = 43/364 (11%)
Query: 60 NEFLEFASGVDSLKEKEIALLTLQEIQKELQ---LVASYP----------SLFQKTIVAV 106
N+F++ S+ + +QE+ KEL + ASY SL + +A+
Sbjct: 7 NDFIKAYENTYSVSFDDSFKGRIQELCKELNEPFMHASYALENELKELVFSLDKNVNIAI 66
Query: 107 GGGFSAGKSTFLNNLLGLKLKLPEDMNPTTAIPTYCLKGKREVLMGFSQNGG--MVELPH 164
G FS+GKS+ LN +LG LP + P T PT+ K L ++G + +
Sbjct: 67 IGQFSSGKSSLLNLILGRDC-LPTGVVPVTFKPTFLRYAKEYFLRVEFEDGSDIITNIEK 125
Query: 165 LAFDHQFLNSLGFNLKEIMPFMLLSAPSVPFEFLCFIDTPGFNSAKQGYTGGDKEASKES 224
LAF N + K + F AP E + +DTPG N+ + D + +
Sbjct: 126 LAFYTDQRNEVK-QAKSLHIF----APIPLLEKITLVDTPGLNANE-----NDTLTTLDE 175
Query: 225 LKHAKHILW--LISCESGEIHEDDLEYLQELYEEGKQVFIVLSRADRRTKRQLEEVVIKI 282
LK+ +W LI + ED ++ EL G+ VL++ D+ + +L+ V+
Sbjct: 176 LKNIHGAIWLSLIDNAGKKSEEDAIKANLELL--GENSICVLNQKDKLSAEELDNVLNYA 233
Query: 283 KETLKDNGIEFLGIGAYSSTRYQEYKEFSEKSKVFNSLEEFLMKLNQRSEKQN------- 335
K E + I + Q Y EKS F SL +FL +L+ K+
Sbjct: 234 KSVFLKYFNELIAISCKEAKDEQSY----EKSN-FQSLLDFLTQLDTTVLKEKFVKRKIL 288
Query: 336 EILGYLYEVHSMYEKAIEQDANQFKRYQSELHSVRLDLMQKGFDDFSDKIFRRIENLEKE 395
+ L + + ++ ++ NQF+ Y+ L + + K + + +I +++++ +
Sbjct: 289 NLCEILEDENQLFVGIFDRLLNQFQSYEKHL-LLAYENFLKEIEILNHQILEQLKSISER 347
Query: 396 FSEQ 399
S +
Sbjct: 348 ISSE 351
>ref|NP_623478.1| (NC_003869) predicted GTPases (dynamin-related) [Thermoanaerobacter
tengcongensis]
gb|AAM25082.1| (AE013140) predicted GTPases (dynamin-related) [Thermoanaerobacter
tengcongensis]
Length = 585
Score = 61.6 bits (148), Expect = 2e-08
Identities = 92/418 (22%), Positives = 176/418 (42%), Gaps = 58/418 (13%)
Query: 73 KEKEIALLTLQEIQKELQL------VASYPSLFQKTI--VAVGGGFSAGKSTFLNNLLGL 124
K ++ L ++EI K + V + F I + V G F GKSTF+N +LG
Sbjct: 10 KNLDLILERIEEISKNADIKAINDTVLEVKNKFSNNIFYLVVLGQFKRGKSTFINYILGA 69
Query: 125 KLKLPEDMNPTTAIPTYCLKGKREVLMGFSQNGGM---VELPHLAFDHQFLNSLGFNLKE 181
+ LP + P T++ T ++ + N GM +++ L N+ N+K
Sbjct: 70 DI-LPTGVVPLTSVITK-VQYSTSIWAKVIHNDGMEKDIDIDELDLYCTERNNPK-NIKG 126
Query: 182 IMPFMLLSAPSVPFEFLC----FIDTPGFNSAKQGYTGGDKEASKESLKHAKHILWLISC 237
+ + PF+F+ +DTPG S + T + + + A +++L S
Sbjct: 127 VKEIHI----GYPFDFVAKDVVIVDTPGIGSVYKHNT----DIAYNYIDKADAVIFLFSV 178
Query: 238 ESGEIHEDDLEYLQELYEEGKQVFIVLSRADRRTKRQLEEVVIK----IKETLKDNGIEF 293
+ I E + E+L E+ + ++F VL++ D T+++L+E+V I+E ++ I
Sbjct: 179 DP-PISEVEKEFLSEISKSVDKIFFVLNKIDYVTEKELKEIVTYNRNIIREITGNSDIFL 237
Query: 294 LGIGAYSSTRYQEYKEFSEKSK-----VFNSLEEFLMKLNQR---SEKQNEILGYLYEVH 345
I A + + K+ K + N L FL+ ++ I +
Sbjct: 238 YPISAKLALEGKLLKDEGSLKKSGVQMLENDLRNFLLGEKEKVLLERYTKNIKRIISMCK 297
Query: 346 SMYE----------KAIEQDANQFKRYQSELHSVRLDL-------MQKGFDDFSDKIFRR 388
+ +E + +E + F++Y E+ + ++ M+K +F +K
Sbjct: 298 TFFESNIRLKLIPLEQLEANIKAFEKYIEEVERAKKEISLLLRSDMKKILQNFDEKSEEY 357
Query: 389 IENLEKEFSEQERSKRESLARLNEVIDLFKEGIDKVFDRVSAFTWEKYKEQNDDEEDD 446
+ L SE+ + ++ L V K ++K F+RV +EK KE + E ++
Sbjct: 358 KKLLSVRVSEKVNNYYYTIRNLGRVDQ--KRELEKYFERVVIEEFEKLKEYIEKEAEE 413
>ref|NP_655473.1| (NC_003995) MMR_HSR1, GTPase of unknown function [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 1219
Score = 58.5 bits (140), Expect = 2e-07
Identities = 69/321 (21%), Positives = 143/321 (44%), Gaps = 25/321 (7%)
Query: 100 QKTIVAVGGGFSAGKSTFLNNLLGLKLKLPEDMNPTTAIPTYCLKGKREVLMGFSQNGGM 159
++ ++A G FSAGKST +N+L +L LP PT+A KG V++ ++G
Sbjct: 42 EQLMIAFCGHFSAGKSTMMNHLYKAQL-LPTSPIPTSANVVKIEKGSDRVVVTI-KSGEQ 99
Query: 160 VELPHLAFDHQFLNSLGFNLKEIMPFMLLSAPSVPFEFLCFIDTPGFNSAKQGYTGGDKE 219
E A+ + L + + E++ + + E + +DTPG +S + +
Sbjct: 100 YEYDG-AYSAEELKQICKDGDEVIGVHIYRNDAPIPEGVMLVDTPGIDSTDDAH-----Q 153
Query: 220 ASKESLKHAKHILWLISCESGEIHEDDLEYLQELYEEGKQVFIVLSRADRRTKRQLE--E 277
+ ES H +++ + + E +L++++EL + K V++V+++ D+ + +L +
Sbjct: 154 LATESTLHLADVIFYMMDYNHVQSEVNLQFVKELKQRNKTVYLVVNQIDKHKENELSFAD 213
Query: 278 VVIKIKETLKDNGIEFLGIGAYSSTRYQE--YKEFSEKSKVFNS-LEEFLMKLNQRSEKQ 334
+K++ + IE G+ Y+S R + E + S ++E + E++
Sbjct: 214 YRDSVKQSFSNWDIEVDGV-YYTSLRMMNHPHNEIENLETLITSIMKEKEQYVRDGMERE 272
Query: 335 NEILGYLYEVHSMYEKAIEQDANQFKRYQSELHSVRLDLMQKGFDDFSDKIFRRIENLEK 394
E YL H + + ++ +Y+ EL S + +K E +
Sbjct: 273 TE---YLMGEHVSF--ILSENEKALLKYEEELAS------PLSISEIVEKKEGLTETKHR 321
Query: 395 EFSEQERSKRESLARLNEVID 415
E S++ + E + L ++D
Sbjct: 322 EASKESHVRNEFIKGLQAILD 342
>sp|P40983|YOR6_CALSR Hypothetical protein in XYNA 3'region (ORF6)
pir||S41790 hypothetical protein 6 - thermophilic bacterium RT8.B4 (fragment)
gb|AAB42046.1| (L18965) ORF6 [Caldicellulosiruptor sp. Rt8B.4]
Length = 402
Score = 58.5 bits (140), Expect = 2e-07
Identities = 90/404 (22%), Positives = 177/404 (43%), Gaps = 60/404 (14%)
Query: 82 LQEIQKEL------QLVASYPSLFQKTI--VAVGGGFSAGKSTFLNNLLGLKLKLPEDMN 133
LQEI E+ +L S +K + V G F GKST +N +LG L LP +
Sbjct: 20 LQEISNEINSESIKKLAGSIKEKIEKNAFYLVVLGQFKRGKSTLINYMLGANL-LPTGVL 78
Query: 134 PTTAIPT---YCLKGKREVLMGFSQNGGMVELPHLAFDHQFLNSLGFNLKEIMPFMLLSA 190
P T++ T Y + K +V+ ++G E+P D ++ + + +
Sbjct: 79 PLTSVITKIYYSPEVKVDVIF---ESGVKKEIPVDELDLYCTERGNPKNQKCVDTIEIG- 134
Query: 191 PSVPFEFL----CFIDTPGFNSAKQGYTGGDKEASKESLKHAKHILWLISCESGEIHEDD 246
PF+FL +DTPG S Q T + + E + + +++++S + I E +
Sbjct: 135 --YPFDFLNKDVVIVDTPGIGSVYQHNT----DVTYEFIDKSDAVVFVLSVDP-PITEVE 187
Query: 247 LEYLQELYEEGKQVFIVLSRADRRTKRQLEEVVI----KIKETLKDNGIEFLGIGAYSST 302
++L ++ E ++F V++++D +K ++EE+V IK+ K I + A +
Sbjct: 188 KQFLLKIAENVDKIFFVINKSDLTSKNEIEEIVSFTTNVIKDITKKGNINIFPLSAKMAL 247
Query: 303 --RYQEYKEFSEKS--KVF-NSLEEFLMKLN---QRSEKQNEILGYLYEVHSMYE----- 349
+ + +E EKS ++F L++FL + Q + G+L + E
Sbjct: 248 EGKISKNEEMIEKSCVEIFEKELKQFLKEEKGKIQILSNLKSLDGFLGVCEAFLENDMKL 307
Query: 350 -----KAIEQDANQFKRYQSELHSVRLDLMQKGFDDFSDKIFRRIEN--LEKEFSEQERS 402
K +E++ +F + ++ ++++ K+F+ N L+ E E+
Sbjct: 308 KIMPVKQLEENIEKFNEFLERVNQNKIEIY---------KLFKIEMNDILQSFDDEMEKI 358
Query: 403 KRESLARLNEVIDLFKEGIDKVFDRVSAFTWEKYKEQNDDEEDD 446
K+E + ++ + I+ + + ++ KY E+ EE D
Sbjct: 359 KKELVVKITKKINDYYPSVARLKRIEQKEHLNKYLEKAIVEEFD 402
>ref|NP_223619.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71874 hypothetical protein jhp0901 - Helicobacter pylori (strain J99)
gb|AAD06484.1| (AE001519) putative [Helicobacter pylori J99]
Length = 166
Score = 54.3 bits (129), Expect = 3e-06
Identities = 45/146 (30%), Positives = 66/146 (44%), Gaps = 11/146 (7%)
Query: 100 QKTIVAVGGGFSAGKSTFLNNLLGLKLKLPEDMNPTTAIPTYCLKGKREVLMGFSQNGGM 159
Q+ ++ V G FSAGKST LN LG + LP + P T++ T E + FS N
Sbjct: 18 QQLVIPVVGNFSAGKSTLLNRFLGSSV-LPTGITPETSLATELHYSANERIEAFSSNDEK 76
Query: 160 V---ELPHLAFDHQFLNSLGFNLKEIMPFMLLSAPSVPFEFLCFIDTPGFNSAKQGYTGG 216
EL +F+ N+ ++ ++ S P L F+D PGF+S +T
Sbjct: 77 TESFELNEQSFEAIKENAAKYSYLKVYLNNEALKDSAP---LVFVDMPGFDSPISSHT-- 131
Query: 217 DKEASKESLKHAKHILWLISCESGEI 242
A E L+ H + L S E G +
Sbjct: 132 --HAILEYLERGVHFVILTSVEEGNL 155
>ref|NP_242566.1| (NC_002570) BH1700~unknown conserved protein in B. subtilis
[Bacillus halodurans]
dbj|BAB05419.1| (AP001512) BH1700~unknown conserved protein in B. subtilis
[Bacillus halodurans]
Length = 1205
Score = 53.9 bits (128), Expect = 4e-06
Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 18/196 (9%)
Query: 104 VAVGGGFSAGKSTFLNNLLGLKLKLPEDMNPTTAIPTYCLKGKREVLMGFSQNGGMVELP 163
+A G +SAGKST LN L+G ++ LP PT+A +G + + +N G +
Sbjct: 38 LAFCGHYSAGKSTILNRLIGAEV-LPTSPIPTSANIIKIAQG--PLGLKVEKNNGELSTF 94
Query: 164 HLAFDHQFLNSLGFNLKEIMPFMLLSAPSVPFEFL----CFIDTPGFNSAKQGYTGGDKE 219
+ G N +EI L ++P FL C DTPG +S + +
Sbjct: 95 TGEIPWDQVREWGMNGEEISSLTL----TLPLPFLNETSCIFDTPGVDSTDPTH----QA 146
Query: 220 ASKESLKHAKHILWLISCESGEIHEDDLEYLQELYEEGKQVFIVLSRADRRTKRQLEEVV 279
+ E L I++++ + E +L +L++L +E K + IV+++ D+ ++++
Sbjct: 147 VTTEQLYTTDGIVYVMDYNHVQ-SETNLYFLKQLSDEKKPIVIVINQIDKHDEQEVPFAT 205
Query: 280 I--KIKETLKDNGIEF 293
+K+ K GIEF
Sbjct: 206 FDQSVKDVFKKWGIEF 221
>ref|NP_176519.1| (NM_105009) hypothetical protein [Arabidopsis thaliana]
gb|AAG52144.1|AC022355_5 (AC022355) hypothetical protein; 26634-22760 [Arabidopsis thaliana]
Length = 1029
Score = 51.6 bits (122), Expect = 2e-05
Identities = 59/269 (21%), Positives = 119/269 (43%), Gaps = 22/269 (8%)
Query: 160 VELPHLAFDHQFLNSLGFNLKEIMPFMLLSAPSVPFEFLCFIDTPGFNSAKQGYTGGDKE 219
+++ LA D++ L ++ + L + ++ C + + E
Sbjct: 490 IQMEQLALDYEILKQQNHDISYKLEQSQLQE-QLKIQYECSSSLVDVTELENQVESLEAE 548
Query: 220 ASKESLKHAKHILWLISCESGEIHEDDLEYLQELYEEGKQVFIVLSRADRRTKRQLEEVV 279
K+S + ++ + C E+ E +E L+E E+ QVF A R K + E+
Sbjct: 549 LKKQSEEFSESL-----CRIKEL-ESQMETLEEEMEKQAQVFEADIDAVTRGKVEQEQRA 602
Query: 280 IKIKETLKDNGIEFLGIGAYSSTRYQEYKEFSEK-SKVFNSLEEFLMKLNQRSEKQNEIL 338
I+ +ETL+ + + + E+K SE+ +F S E+ MK + NE+
Sbjct: 603 IQAEETLRKTRWKNASV---AGKLQDEFKRLSEQMDSMFTSNEKMAMKAMTEA---NELR 656
Query: 339 GYLYEVHSMYEKAIEQDANQFKRYQSELHSVRLDLMQKGFDDFSDKIFRRIENLEKEFSE 398
++ M + A ++ Y+++LH + L K + ++ R +ENL+++ +E
Sbjct: 657 MQKRQLEEMIKDANDELRANQAEYEAKLHELSEKLSFK-----TSQMERMLENLDEKSNE 711
Query: 399 ---QERSKRESLARLNEVIDLFKEGIDKV 424
Q+R + + A LN+ I + KE I+ +
Sbjct: 712 IDNQKRHEEDVTANLNQEIKILKEEIENL 740
>ref|NP_390085.1| (NC_000964) ypbR [Bacillus subtilis]
sp|P54159|YPBR_BACSU Hypothetical protein ypbR
pir||E69933 hypothetical protein ypbR - Bacillus subtilis
gb|AAA96615.1| (L77246) 26.7% of identity in 165 aa to a Thermophilic bacterium
hypothetical protein 6; putative [Bacillus subtilis]
emb|CAB14120.1| (Z99115) ypbR [Bacillus subtilis]
Length = 1193
Score = 51.2 bits (121), Expect = 2e-05
Identities = 70/352 (19%), Positives = 149/352 (41%), Gaps = 28/352 (7%)
Query: 100 QKTIVAVGGGFSAGKSTFLNNLLGLKLKLPEDMNPTTAIPTYCLKGKREVLMGFSQNGGM 159
++ +A G +SAGKS+ LN LL ++ LP PT+A G++ V + + +G
Sbjct: 42 EEVYIAFTGHYSAGKSSLLNCLL-MENILPTSPIPTSANLVVIRNGEKRVRL-HTTDGAC 99
Query: 160 VELPHLAFDHQFLNSLGFNLKEIMPFMLLSAPSVPFEFLCFIDTPGFNSAKQGYTGGDKE 219
EL + + + ++I + + + +IDTPG +S +
Sbjct: 100 AELEG-TYQKDKVQQYCKDGEQIESVEIFDRYTEIDSGVAYIDTPGIDSTDDAHF----- 153
Query: 220 ASKESLKHAKHILWLISCESGEIHEDDLEYLQELYEEGKQVFIVLSRADR--RTKRQLEE 277
S S+ H L+ + + E+++++L+ + E V+ ++++ DR T+ + +
Sbjct: 154 LSAASILHQADALFYVVHYNHVHAEENVKFLRSIKESIPNVYFIVNQIDRHDETETKFGD 213
Query: 278 VVIKIKETLKDNGIEFLGIGAYSSTRYQEYKEFSEKSKVFN---SLEEFLMKLNQRSEKQ 334
+++E L + GI S + +E FN +L E L ++ Q+S+
Sbjct: 214 YQAQVEEMLCNEGI---------SREALYFTSVTEPDHPFNQMGALREELSRIEQQSKSN 264
Query: 335 NEIL-----GYLYEVHSMYEKAIEQDANQFKRYQSELHSVRLDLMQKGFDDFSDKIFRRI 389
+ L L + H+ K E A F Q +H+ + ++ D+ ++
Sbjct: 265 MQALTEQKVRNLLKEHTEMLKKDETGAPSFAE-QLNIHTGLVQSLRDQLDEAEKQMTEAE 323
Query: 390 ENLEKEFSEQERSKRESLARLNEVIDLFKEGIDKVFDRVSAFTWEKYKEQND 441
+ +++E + ++ + + E+ F E + F F+ K ++ D
Sbjct: 324 KRMQEEINRILKNANLTPFEMRELAAAFLESQEPSFKTGFFFSKAKTAQERD 375
>dbj|BAA90654.1| (AB003153) OrfZ [Paenibacillus polymyxa]
Length = 493
Score = 50.1 bits (118), Expect = 5e-05
Identities = 68/319 (21%), Positives = 135/319 (42%), Gaps = 40/319 (12%)
Query: 100 QKTIVAVGGGFSAGKSTFLNNLLGLKLKLPEDMNPTTAIPTYCLKGKREVLMGFSQNG-- 157
Q+ +A G FSAGKS+ +N+L G K LP PT+A G+ L+ +++
Sbjct: 45 QELTIAFCGHFSAGKSSLINSLCG-KTVLPSGPVPTSANVVSIRHGRSRALIHPARSAEN 103
Query: 158 ---GMVELPHLAFDHQFLNSLGFNLKEIM-PFMLLSAPSVPFEFLCFIDTPGFNSAKQGY 213
+VE N + E+ +LS V +DTPG +S G+
Sbjct: 104 PEPEIVEASLSELAEYCKNGGAYESVEVWEDIPILSGGGV------LLDTPGVDSTDHGH 157
Query: 214 TGGDKEASKESLKHAKHILWLISCESGEIHEDDLEYLQELYEEGKQVFIVLSRADRRTKR 273
+ S H I++ + + E++L + + L + GK +++++++ D+ +R
Sbjct: 158 A-----MATHSALHWADIVFYVMDYNHVQSENNLSFAKSLSDWGKPLYLIINQIDKHRER 212
Query: 274 QL--EEVVIKIKETLKDNGIEFLGIGAYSSTRYQEYKEFSEKSKVFNSLEEFLMKLNQRS 331
+L +++ + + + I + E++ +N E+ + +
Sbjct: 213 ELSFSRYRNEVESSFHAWQVHYTDI---------LFTSLKEQNHPWNQWEQLTCLIPKLL 263
Query: 332 EKQNEILGY--LYEVHSMYEKAIE--QDANQ------FKRYQSELHSVRLDLMQKGFDDF 381
E++ E+L Y + +H + ++ +E Q A + K E +RLD+ QK
Sbjct: 264 ERKAELLAYSLVSSMHHLVDQHVETVQAAEEEELNVLLKEAGGEEAILRLDIEQKTLQQ- 322
Query: 382 SDKIFRRIENLEKEFSEQE 400
D+ +R + E + QE
Sbjct: 323 EDEHWRMLPEQEHKRLRQE 341
>ref|NP_488454.1| (NC_003272) unknown protein [Nostoc sp. PCC 7120]
dbj|BAB76113.1| (AP003596) ORF_ID:all4414~unknown protein [Nostoc sp. PCC 7120]
Length = 693
Score = 49.7 bits (117), Expect = 7e-05
Identities = 90/437 (20%), Positives = 168/437 (37%), Gaps = 88/437 (20%)
Query: 70 DSLKEKEIALLTLQ---EIQKELQLVASYPSLFQKTI--VAVGGGFSAGKSTFLNNLLGL 124
D++ + E+A T ++++L+ ++ +K + + V G GKSTFLN L+G
Sbjct: 33 DTINQAELAGDTSSGKLSLERDLEDISVASKNLKKGVFRLLVLGDMKRGKSTFLNALIGE 92
Query: 125 KLKLPEDMNPTTAIPTYCLKG-KREVLMGFSQNGGMVELPHLAFDHQF------LNSLGF 177
L LP D+NP TA+ T G +++V + F+ L +F +++ L
Sbjct: 93 NL-LPSDVNPCTAVLTVLRYGAEKKVTIHFNDGKSPQTLDFQSFKYKYTIDPAEAKKLEQ 151
Query: 178 NLKEIMPFMLLSAPSVPFEFL----CFIDTPGFNS-----------------------AK 210
K+ P + + P L +D+PG N A
Sbjct: 152 EKKQAFPDVDYAVVEYPLTLLEKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRAS 211
Query: 211 QGYTGGDKEASKESLK-HAKHILWLISC----ESGEIHEDDLEYLQELYEEGKQVF---- 261
Q T G++ + +K + +LI+ + I DD++ L+ + +QVF
Sbjct: 212 QPCTLGERRYLENYIKGRGLSVFFLINAWDQVKESLIDPDDVDELKASEDRLRQVFKANL 271
Query: 262 ---IVLSRADRRTKRQLEEVVIK-IKETLKDNGIEFLGIGAYSSTRYQEYKEFSEKSKVF 317
+ + +R E I+ ++ LKD+ + G G + EF F
Sbjct: 272 TEYCYVDGQNIYDERVFELSSIQALRRRLKDSQADLTGTG---------FPEFMGSLNTF 322
Query: 318 NSLEEFLMKLNQRSEKQNEILGYLYEVHSMYEKAIEQDANQFKRYQSELHSVRLDLMQKG 377
+ E + +L Q + + + E ++QD ++ K+ R+D ++
Sbjct: 323 LTRERAIAELRQARTLARQAVNHTREAIGRRLPLLDQDVDELKK--------RIDSVEPE 374
Query: 378 F-------DDFSDKIFRRIENLEKEFSEQERSKRESLARLNE-----------VIDLFKE 419
F D F +IF + ++ SE RS +L E ++D
Sbjct: 375 FTKLNHIRDQFQKEIFTTRDTQARKVSESFRSYVLNLGNTFETDFLRYQPELNLLDFLSN 434
Query: 420 GIDKVFDRVSAFTWEKY 436
G + F+ +E+Y
Sbjct: 435 GKREAFNTALQKAFEQY 451
>sp|O33600|RA50_SULAC DNA double-strand break repair rad50 ATPase
emb|CAA71688.1| (Y10687) purine NTPase [Sulfolobus acidocaldarius]
emb|CAD26845.1| (AJ437617) Rad50 protein [Sulfolobus acidocaldarius]
Length = 886
Score = 48.1 bits (113), Expect = 2e-04
Identities = 52/213 (24%), Positives = 101/213 (47%), Gaps = 31/213 (14%)
Query: 252 ELYEEGKQVFIVLSRADR--RTKRQLEEVVIKIKETLKDNGIEFLGIGAYSSTRYQEYKE 309
+L E KQ+ + +R + + + +LE K++ L+ E G Y + + +
Sbjct: 459 QLLELNKQITALQARINSLIKEREELEATRNKLQLELQKRSKEK---GIYEAKLKELQRL 515
Query: 310 FSEKSKVFN---SLEEFLMKLNQRSEKQNEILGYLYEVHSMYEKAIEQDANQFKRYQSEL 366
EK+K+ N SL + + +EK+ E++ Y +E + +E+D + ++ +EL
Sbjct: 516 EEEKNKLQNEILSLLSYHQEFENIAEKEKELIDY-HEEYLKNSDILEEDIQEQEQRLNEL 574
Query: 367 HSVRLDLMQKGFDDFS-----------------DKIFRRIENLEKEFSEQERSKRE--SL 407
+S +L ++K ++D+ ++I RRI LEK E ER K E +
Sbjct: 575 NS-KLSELEKSYNDYKAKYQFLPADLKSLVSLEERIRRRISELEKLKIEYERLKEEITRM 633
Query: 408 ARLNEVIDLFKEGIDKVFDRVS--AFTWEKYKE 438
L E + KE D + +R+S ++ ++YK+
Sbjct: 634 KGLKEEYEKLKEEEDALLNRISELGYSEKRYKQ 666
>ref|NP_180608.1| (NM_128602) unknown protein [Arabidopsis thaliana]
gb|AAB63087.1| (U93215) unknown protein [Arabidopsis thaliana]
Length = 516
Score = 48.1 bits (113), Expect = 2e-04
Identities = 47/237 (19%), Positives = 106/237 (43%), Gaps = 39/237 (16%)
Query: 221 SKESLKHAKHILWLIS--CESGEIHEDDLEYLQ---ELYEEGKQVFIVLSRADRRTKRQL 275
+KE L+H + + + E G+ E+ L+ LQ EL + +I A+++ +L
Sbjct: 271 AKEKLQHFEKETYSLKNELEIGKAAEEKLKSLQHELELAQRDADTYINKLNAEKKEVLKL 330
Query: 276 EEVVIKIKETLKDNGIEFLGIGAYSSTRYQEYKEFSEKSKVFNSLEEFLMKLNQ------ 329
+E + +K +L+D E + S E K F EK+++ + + L + +Q
Sbjct: 331 QERLAMVKTSLQDRDNEIRALKTAVSDA--EQKIFPEKAQIKGEMSKMLEERSQLGEQLR 388
Query: 330 ------------RSEKQNEILGYLYEVHSMYEKAI---------EQDANQFKRYQSELHS 368
++E + ++ G ++ M +++ E+ + +++ ELH
Sbjct: 389 ELESHIRLIKEEKAETEEKLRGGTEKISGMRDESNVLREEIGKREEKIKETEKHMEELHM 448
Query: 369 VRLDLMQKGFDDFSDKIFRRIENLEKEFSEQERSKRESLARLNEVIDLFKEGIDKVF 425
++ L ++ S ++ +E SE KRE++ +L +D +++G D+++
Sbjct: 449 EQVRLRRR-----SSELTEEVERTRVSASEMAEQKREAIRQLCMSLDHYRDGYDRLW 500
>ref|NP_126901.1| (NC_000868) purine NTPase, putative [Pyrococcus abyssi]
sp|Q9UZC8|RA50_PYRAB DNA double-strand break repair rad50 ATPase
pir||F75103 probable purine NTPase PAB0812 - Pyrococcus abyssi (strain Orsay)
emb|CAB50131.1| (AJ248286) purine NTPase, putative [Pyrococcus abyssi]
Length = 880
Score = 45.8 bits (107), Expect = 0.001
Identities = 57/236 (24%), Positives = 97/236 (40%), Gaps = 45/236 (19%)
Query: 223 ESLKHAKHILWLISCESGEIHEDDLEYLQELYEEGKQVFIVLSRADRRTK------RQLE 276
E +K + L + E E E + E L E + + K + L R +R K + +E
Sbjct: 504 EQIKELESKLKGFNLEELEQKEREFEGLNEEFNKLKGELLGLERDLKRIKALEGRRKLIE 563
Query: 277 EVVIKIKETLKDNGIEFLGIGAYS----STRYQEYKEFSEKSKVFNSLEEFLMKLNQRSE 332
E V K KE L++ + +G S + R QE +EF +K E L +L + E
Sbjct: 564 EKVRKAKEELENLHRQLRELGFESVEELNLRIQELEEFHDKYVEAKKSESELRELKNKLE 623
Query: 333 KQNEILGYLYEVHSMYEKAIEQDANQFKRYQSELHSVRLDLMQKGFDDFSDKIFRRIENL 392
K+ L +E+ + E IE+ ++++L
Sbjct: 624 KEKTELDQAFEMLADVENEIEEKE------------------------------AKLKDL 653
Query: 393 EKEFSEQE-RSKRESLARLNEVIDLFK---EGIDKVFDRVSAFTWEKYKEQNDDEE 444
E +F+E+E KRE L +L + E + K +++ A T K KE+ ++ E
Sbjct: 654 ESKFNEEEYEEKRERLVKLEREVSSLTARLEELKKSVEQIKA-TLRKLKEEKEERE 708
Score = 42.7 bits (99), Expect = 0.009
Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 15/205 (7%)
Query: 216 GDKEASKESLKHAKHILWLISCESGEIHEDDLEYLQELYEEGKQVFIVLSRADRRTK-RQ 274
G+ E +E++K + I IS +I + L+ ++ EE K V I S +++ K +
Sbjct: 225 GELEKVRENVKELESIKGKIS--ELKIQVEKLKGRKKGLEE-KIVQIERSIEEKKAKISE 281
Query: 275 LEEVVIKIKETLKDNGIEFLGIGA----YSSTRYQEYKEFSEKSKVFNSLEEFLMKLNQR 330
LEE+V I + L++ E+ + Y S + KE S+ ++EE + + ++
Sbjct: 282 LEEIVKDIPK-LQEKEKEYRKLKGFRDEYESKLRRLEKELSKWESELKAIEEVIKEGEKK 340
Query: 331 SEKQNEILGYLYEVHSMYE--KAIEQDANQFKRYQSELHSVRLDLMQKGFDDFSDKIFRR 388
E+ EI L E+ E K ++ K+ Q ++ RL KG ++ +
Sbjct: 341 KERAEEIREKLSEIEKRLEELKPYVEELEDAKQVQKQIE--RLKARLKGLS--PGEVIEK 396
Query: 389 IENLEKEFSEQERSKRESLARLNEV 413
+E+LEKE +E E + +E R+ ++
Sbjct: 397 LESLEKERTEIEEAIKEITTRIGQM 421
>ref|NP_248250.1| (NC_000909) M. jannaschii predicted coding region MJ1254
[Methanococcus jannaschii] [Methanocaldococcus
jannaschii]
pir||E64456 hypothetical protein MJ1254 - Methanococcus jannaschii
gb|AAB99266.1| (U67566) M. jannaschii predicted coding region MJ1254
[Methanococcus jannaschii] [Methanocaldococcus
jannaschii]
Length = 469
Score = 45.4 bits (106), Expect = 0.001
Identities = 45/179 (25%), Positives = 87/179 (48%), Gaps = 15/179 (8%)
Query: 245 DDLEYLQELYEEGKQVFIVLSRADRRTKRQLEEVVIKIKETLKDNGIEFLGIGAYSSTRY 304
++L+YL + G +F L ++ +KR++ E IK E + +
Sbjct: 248 NNLKYLLIIAIFGTAIFGGLFVKEKISKRKIIERTKNIKN-------ELTSLKNKLKEKE 300
Query: 305 QEYKEFSEKSKVFNSLEEFLMKLNQRSEKQNEILGYLYEVHSMYEKAIEQDANQFKRYQS 364
+E K + K K LE+ L K N+ ++EI+ L E S YE I++ ++ Y+
Sbjct: 301 EEIKNLAIKIK---DLEDKLSKANKNLLNKDEIISVLNERISEYESQIQKLLDENIIYKE 357
Query: 365 ELHSVR--LDLMQKGFDDFSDKIFRRIENLEKEFSEQERSKRESLARLNE--VIDLFKE 419
++ S+ ++ ++K D DK+ R + ++ K++ E++R S +E +IDL K+
Sbjct: 358 KIESLNKYIETLKKENDKLKDKV-RELSDIAKKYMEEKRGVLWSFLTEDEKIIIDLIKK 415
>ref|NP_377206.1| (NC_003106) 311aa long conserved hypothetical protein [Sulfolobus
tokodaii]
dbj|BAB66315.1| (AP000985) 311aa long conserved hypothetical protein [Sulfolobus
tokodaii]
Length = 311
Score = 45.1 bits (105), Expect = 0.002
Identities = 39/162 (24%), Positives = 73/162 (44%), Gaps = 9/162 (5%)
Query: 255 EEGKQVFIVLSRADRRTKRQLEEVVIKIKETLKDNGIEFLGIGAYSSTRYQEYKEF---- 310
EE K+ I+L A+ K + + + ++KE +N E L ST Q E
Sbjct: 129 EEEKK--IILKIANLEKKLETAKKLAQLKEKNTENRAELLAKRVELSTIRQRIVELRNQI 186
Query: 311 SEKSKVFNSLEEFLMKLNQRSEKQNEILGYLYEVHSMYEKAIEQDANQFKRYQSELHSVR 370
SEK K++ L+ L + E N + L ++ + I + ++ K+Y+ EL ++
Sbjct: 187 SEKVKIYQQLKNERDSLVKEIEILNNQINELVNKNNEIKNKITEKKDEIKKYRDELKKIK 246
Query: 371 LDLMQKGFDDFSDKIFRRIENLEKEFSEQERSKRESLARLNE 412
L + + + +++N+ KE E +R K E + N+
Sbjct: 247 DMLKSRNITEVYE---NQLKNVNKEIIENKRKKAEEKLKNNK 285
>ref|XP_140750.1| (XM_140750) similar to hypothetical protein FLJ10188 [Mus musculus]
Length = 851
Score = 42.7 bits (99), Expect = 0.009
Identities = 51/219 (23%), Positives = 101/219 (45%), Gaps = 23/219 (10%)
Query: 218 KEASKESLKHAKHILWLISCESGEIHEDDLEYLQELYEEGKQVFIVLSRADRRTKRQLEE 277
++ASKE K+ I L S E G LQ+LYE + L R + K ++
Sbjct: 338 RDASKELEKNTNKIKQL-SQEKGR--------LQQLYESKEGETTRLIREIEKLKEEMNS 388
Query: 278 VVIKIK------ETLKDNGIEFLGIGAYSSTRYQEYKEFSEKSKVFNSLEEFLMKLNQRS 331
VIK+K + D+ E ++T+ + KE E ++ + ++ ++K Q S
Sbjct: 389 QVIKVKWAQNKLKAEMDSHKETKDKLKETTTKLTQAKE--EAEQIRQNCQD-MIKTYQES 445
Query: 332 E--KQNEILGYLYEVHSMYEKAIEQDANQFKRYQSELHSVRLDLMQKGFDDFSDKIFRRI 389
E K NE+ L EK +++ ++Q + + +++ L+ +++ F + D++ R +
Sbjct: 446 EEIKSNELDAKLRVTKGELEKQMQEKSDQLEMHHAKIK--ELEDLKRTFKEGMDEL-RTL 502
Query: 390 ENLEKEFSEQERSKRESLARLNEVIDLFKEGIDKVFDRV 428
K ++ + L++ E+I+ K I + D+V
Sbjct: 503 RTKAKCLEDERLRTEDELSKYREIINRQKSEIQNLLDKV 541
>ref|NP_182141.1| (NM_130180) hypothetical protein [Arabidopsis thaliana]
gb|AAC62888.1| (AC005397) hypothetical protein [Arabidopsis thaliana]
Length = 670
Score = 42.7 bits (99), Expect = 0.009
Identities = 50/221 (22%), Positives = 95/221 (42%), Gaps = 19/221 (8%)
Query: 241 EIHEDDLEYLQELYEEGKQVFIVLSRADRRTKRQLEEVVIKIKETLKDNGIEFLGIGAYS 300
E H+ + E+ + L E + + +R + + + + I ++E K N +
Sbjct: 179 ESHKKEKEFAEMLEERTRSMASAQARELEKEREKSANLQILLQEERKQNETFKEEL---Q 235
Query: 301 STRYQEYKEFSEKSKVFNSLEEFLMKLNQRSEKQN----EILGYLYEVHSMYEKAIEQDA 356
S R + K E +KV L+ L ++ Q K N G E KA+E++
Sbjct: 236 SLRLDKEKTLMESNKVRRELDAKLAEIRQLQMKLNGGEQHAFGISRENLKEVNKALEKEN 295
Query: 357 NQFKRYQSELHSVRLDLMQKG-----FDDFSDKIFRRIENLEKEFSEQERSKRE---SLA 408
N+ K +SEL + L+ QK F ++ + R + +L++E + K + SL
Sbjct: 296 NELKLKRSELEAA-LEASQKSTSRKLFPKSTEDLSRHLSSLDEEKAGTFPGKEDMEKSLQ 354
Query: 409 RLNEVIDLFKEGIDKV---FDRVSAFTWEKYKEQNDDEEDD 446
RL + ++ + DK R+ EK E+++ ++D
Sbjct: 355 RLEKELEEARREKDKARQELKRLKQHLLEKETEESEKMDED 395
>gb|AAL47462.1| (AY069912) At2g46180/T3F17.17 [Arabidopsis thaliana]
Length = 725
Score = 42.7 bits (99), Expect = 0.009
Identities = 50/221 (22%), Positives = 95/221 (42%), Gaps = 19/221 (8%)
Query: 241 EIHEDDLEYLQELYEEGKQVFIVLSRADRRTKRQLEEVVIKIKETLKDNGIEFLGIGAYS 300
E H+ + E+ + L E + + +R + + + + I ++E K N +
Sbjct: 179 ESHKKEKEFAEMLEERTRSMASAQARELEKEREKSANLQILLQEERKQNETFKEEL---Q 235
Query: 301 STRYQEYKEFSEKSKVFNSLEEFLMKLNQRSEKQN----EILGYLYEVHSMYEKAIEQDA 356
S R + K E +KV L+ L ++ Q K N G E KA+E++
Sbjct: 236 SLRLDKEKTLMESNKVRRELDAKLAEIRQLQMKLNGGEQHAFGISRENLKEVNKALEKEN 295
Query: 357 NQFKRYQSELHSVRLDLMQKG-----FDDFSDKIFRRIENLEKEFSEQERSKRE---SLA 408
N+ K +SEL + L+ QK F ++ + R + +L++E + K + SL
Sbjct: 296 NELKLKRSELEAA-LEASQKSTSRKLFPKSTEDLSRHLSSLDEEKAGTFPGKEDMEKSLQ 354
Query: 409 RLNEVIDLFKEGIDKV---FDRVSAFTWEKYKEQNDDEEDD 446
RL + ++ + DK R+ EK E+++ ++D
Sbjct: 355 RLEKELEEARREKDKARQELKRLKQHLLEKETEESEKMDED 395
>ref|NP_563924.1| (NM_101194) putative nuclear matrix constituent protein;
alternative splicing isoform supported by protein
homology and gene predictions [Arabidopsis thaliana]
gb|AAD31075.1|AC007357_24 (AC007357) Similar to gb|D64087 nuclear matrix constituent protein
1 (NMCP1) from Daucus carota. [Arabidopsis thaliana]
Length = 1128
Score = 42.7 bits (99), Expect = 0.009
Identities = 69/256 (26%), Positives = 117/256 (44%), Gaps = 48/256 (18%)
Query: 217 DKEASKESLKHAKHILWL----ISCESGEIHEDDLEYLQELYEEGKQVFIVLSRADRRTK 272
D EA +++K + I+ +S E ++ D E L++L +E +++ RA+ K
Sbjct: 445 DLEAKLKTIKEREKIIQAEEKRLSLEKQQLLSDK-ESLEDLQQEIEKI-----RAEMTKK 498
Query: 273 RQLEEVVIKIKETLKDNGIEFLGIGAYSSTRYQEYKEFSEKSKVFNSLEEFLMKL----- 327
++ E K E K+ E+L + + E K EKS+V EEFL K
Sbjct: 499 EEMIEEECKSLEIKKEEREEYLRLQS-------ELKSQIEKSRVH---EEFLSKEVENLK 548
Query: 328 --NQRSEKQNEILGYLYEVHSMYEKAIEQDANQFKRYQ--------SELHSVRLDLMQKG 377
+R EK+ EIL V++ I ++ +F+R+Q E ++R+ +MQ+
Sbjct: 549 QEKERFEKEWEILDEKQAVYNKERIRISEEKEKFERFQLLEGERLKKEESALRVQIMQE- 607
Query: 378 FDDFSDKIFRRIENLEKEFSE-QERSKRE--------SLARLNEVIDL--FKEGIDK-VF 425
DD + N+E E S QE+ K E + R N I+L KE +K +
Sbjct: 608 LDDIRLQRESFEANMEHERSALQEKVKLEQSKVIDDLEMMRRNLEIELQERKEQDEKDLL 667
Query: 426 DRVSAFTWEKYKEQND 441
DR++ F ++ E +D
Sbjct: 668 DRMAQFEDKRMAELSD 683
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.316 0.136 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 279,051,352
Number of Sequences: 1026957
Number of extensions: 11995236
Number of successful extensions: 51220
Number of sequences better than 1.0e-02: 23
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 51170
Number of HSP's gapped (non-prelim): 48
length of query: 447
length of database: 324,149,939
effective HSP length: 124
effective length of query: 323
effective length of database: 196,807,271
effective search space: 63568748533
effective search space used: 63568748533
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 99 (42.7 bits)