BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645580|ref|NP_207756.1| hypothetical protein
[Helicobacter pylori 26695]
(363 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207756.1| (NC_000915) hypothetical protein [Helicoba... 708 0.0
ref|NP_223616.1| (NC_000921) putative [Helicobacter pylori ... 319 3e-86
ref|NP_223617.1| (NC_000921) putative [Helicobacter pylori ... 103 4e-21
ref|NP_207754.1| (NC_000915) acyl carrier protein (acpP) [H... 69 8e-11
gb|AAF89163.2|AF209068_1 (AF209068) Mud protein [Drosophila... 49 9e-05
ref|NP_536743.1| (NM_080495) mushroom body defect [Drosophi... 46 6e-04
sp|P08799|MYS2_DICDI Myosin II heavy chain, non muscle >gi|... 45 0.001
gb|AAM69078.1|U64862_3 (U64862) Hypothetical protein ZC8.4a... 45 0.001
ref|NP_508847.1| (NM_076446) ZC8.4b.p [Caenorhabditis elega... 45 0.001
ref|NP_508848.1| (NM_076447) probable myofibrillar protein ... 45 0.001
ref|NP_446205.1| (NM_053753) Kupffer cell receptor [Rattus ... 45 0.001
gb|AAD28718.2|AF112359_1 (AF112359) myosin heavy chain A [S... 45 0.002
emb|CAB62239.1| (AJ243902) P75 protein [Mycoplasma hominis] 44 0.002
dbj|BAB71249.1| (AK056673) unnamed protein product [Homo sa... 43 0.007
ref|NP_599220.1| (NM_134393) outer dense fiber ODF3 [Rattus... 42 0.009
pir||T18296 myosin heavy chain - Entamoeba histolytica >gi|... 42 0.009
>ref|NP_207756.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64640 hypothetical protein HP0964 - Helicobacter pylori (strain 26695)
gb|AAD08016.1| (AE000605) H. pylori predicted coding region HP0964 [Helicobacter
pylori 26695]
Length = 363
Score = 708 bits (1827), Expect = 0.0
Identities = 363/363 (100%), Positives = 363/363 (100%)
Query: 1 MLQCMAEFNQRLPPDAFNSVDKSEESLLFLSNMGAIKERLEKAASRKEEIISQRLQDYAQ 60
MLQCMAEFNQRLPPDAFNSVDKSEESLLFLSNMGAIKERLEKAASRKEEIISQRLQDYAQ
Sbjct: 1 MLQCMAEFNQRLPPDAFNSVDKSEESLLFLSNMGAIKERLEKAASRKEEIISQRLQDYAQ 60
Query: 61 SQANNLHNLIAQLFQDLEDEKKRVKNADMGAIKKQIEAYEKLSGNIEIGFREAYEEFIFH 120
SQANNLHNLIAQLFQDLEDEKKRVKNADMGAIKKQIEAYEKLSGNIEIGFREAYEEFIFH
Sbjct: 61 SQANNLHNLIAQLFQDLEDEKKRVKNADMGAIKKQIEAYEKLSGNIEIGFREAYEEFIFH 120
Query: 121 FIKNTRDGLNETLTKAIQKASALAREEEEEERYTERVKQGGLFGSFKRNFLWWADDDAGY 180
FIKNTRDGLNETLTKAIQKASALAREEEEEERYTERVKQGGLFGSFKRNFLWWADDDAGY
Sbjct: 121 FIKNTRDGLNETLTKAIQKASALAREEEEEERYTERVKQGGLFGSFKRNFLWWADDDAGY 180
Query: 181 DEVSRTRATIKAGAVLDYLTEMHERCENALNDSADSFKVVFRKELYAKVFSQLREIISDD 240
DEVSRTRATIKAGAVLDYLTEMHERCENALNDSADSFKVVFRKELYAKVFSQLREIISDD
Sbjct: 181 DEVSRTRATIKAGAVLDYLTEMHERCENALNDSADSFKVVFRKELYAKVFSQLREIISDD 240
Query: 241 LIDEVAFQKSVMAVLDSIEFKEFDYTDKLPSEIRGKTGFLKGDEADAFIQSVGNYVRNFE 300
LIDEVAFQKSVMAVLDSIEFKEFDYTDKLPSEIRGKTGFLKGDEADAFIQSVGNYVRNFE
Sbjct: 241 LIDEVAFQKSVMAVLDSIEFKEFDYTDKLPSEIRGKTGFLKGDEADAFIQSVGNYVRNFE 300
Query: 301 SEAKKDVKGYIQGLREALERQNFASDTLQKLKENMQNLQNQVQNKEQSIAQLDAQIQALK 360
SEAKKDVKGYIQGLREALERQNFASDTLQKLKENMQNLQNQVQNKEQSIAQLDAQIQALK
Sbjct: 301 SEAKKDVKGYIQGLREALERQNFASDTLQKLKENMQNLQNQVQNKEQSIAQLDAQIQALK 360
Query: 361 GIQ 363
GIQ
Sbjct: 361 GIQ 363
>ref|NP_223616.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71873 hypothetical protein jhp0898 - Helicobacter pylori (strain J99)
gb|AAD06481.1| (AE001519) putative [Helicobacter pylori J99]
Length = 244
Score = 319 bits (818), Expect = 3e-86
Identities = 174/244 (71%), Positives = 195/244 (79%), Gaps = 1/244 (0%)
Query: 120 HFIKNTRDGLNETLTKAIQKASALAREEEEEERYTERVKQGGLFGSFKRNFLWWADDDAG 179
HFI N R GL ETL KAIQ A A EEE ERYTERV+QGGL G + + + D G
Sbjct: 2 HFINNIRVGLEETLKKAIQTAKVGA-EEEGVERYTERVEQGGLGGWARWFGSVFGEKDWG 60
Query: 180 YDEVSRTRATIKAGAVLDYLTEMHERCENALNDSADSFKVVFRKELYAKVFSQLREIISD 239
Y+EV RTRA IKAGAVLDYLTEMH CE ALNDSA+S KV F KELYAKVF QLREIISD
Sbjct: 61 YEEVGRTRAVIKAGAVLDYLTEMHGSCEGALNDSANSSKVAFTKELYAKVFPQLREIISD 120
Query: 240 DLIDEVAFQKSVMAVLDSIEFKEFDYTDKLPSEIRGKTGFLKGDEADAFIQSVGNYVRNF 299
DLIDEVAF+KSV AVL+ IEF+EFDY DKLP +IRGKTGFLKGDEA+AFIQSV N+VR F
Sbjct: 121 DLIDEVAFKKSVDAVLNPIEFEEFDYADKLPGQIRGKTGFLKGDEANAFIQSVENHVRGF 180
Query: 300 ESEAKKDVKGYIQGLREALERQNFASDTLQKLKENMQNLQNQVQNKEQSIAQLDAQIQAL 359
E+EAK+DVKG+IQGLRE L Q+FA+ L KL+++MQNL NQ QNK QSIAQLDA+I AL
Sbjct: 181 EAEAKQDVKGHIQGLREDLGEQDFANGVLSKLQQDMQNLHNQAQNKAQSIAQLDAKINAL 240
Query: 360 KGIQ 363
K IQ
Sbjct: 241 KEIQ 244
>ref|NP_223617.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71874 hypothetical protein jhp0899 - Helicobacter pylori (strain J99)
gb|AAD06482.1| (AE001519) putative [Helicobacter pylori J99]
Length = 500
Score = 103 bits (256), Expect = 4e-21
Identities = 51/82 (62%), Positives = 66/82 (80%)
Query: 14 PDAFNSVDKSEESLLFLSNMGAIKERLEKAASRKEEIISQRLQDYAQSQANNLHNLIAQL 73
PDAF+S DKS+ES LFL NMGAI+ERL+KAA KE+I+SQ+LQ+YA+SQANNLH+ I QL
Sbjct: 419 PDAFSSDDKSKESSLFLINMGAIEERLKKAAQEKEKIMSQKLQNYAESQANNLHSFITQL 478
Query: 74 FQDLEDEKKRVKNADMGAIKKQ 95
QDLE+EK+ +K + K +
Sbjct: 479 LQDLEEEKRGLKTLTLALSKSK 500
>ref|NP_207754.1| (NC_000915) acyl carrier protein (acpP) [Helicobacter pylori 26695]
pir||B64640 acyl carrier protein - Helicobacter pylori (strain 26695)
gb|AAD08009.1| (AE000605) acyl carrier protein (acpP) [Helicobacter pylori 26695]
Length = 153
Score = 68.9 bits (167), Expect = 8e-11
Identities = 50/160 (31%), Positives = 70/160 (43%), Gaps = 9/160 (5%)
Query: 143 LAREEEEEERYTERVKQGGLFGSFKRNFLWWADDDAGYDEVSRTRATIKAGAVLDYLTEM 202
+ E +EERYTERV QGG++GSFKR FL WADDDAGYDE + + L E
Sbjct: 1 MIEENYKEERYTERVNQGGVWGSFKRKFLSWADDDAGYDEEKDYENLLNNEKLQKKLREW 60
Query: 203 HERCENALNDSADSFKVVFRKELYAKVFSQLREIISDDLIDEVAFQKSVMAVLDSIEFKE 262
N+ + E V ++ + + + E F K + A D +E
Sbjct: 61 RRTKNQQNNNKTFNTNDTNSFETIQSVIAEQLNVDAVQVTPEAEFVKDLGADSDVVE--- 117
Query: 263 FDYTDKLPSEIRGKTGFLKGDEADAFIQSVGNYVRNFESE 302
L + K G DE I +VG+ +R E +
Sbjct: 118 ------LIMALEEKFGIEIPDEQAEKIVNVGDVMRYIEKQ 151
>gb|AAF89163.2|AF209068_1 (AF209068) Mud protein [Drosophila melanogaster]
Length = 1871
Score = 48.9 bits (115), Expect = 9e-05
Identities = 78/344 (22%), Positives = 151/344 (43%), Gaps = 52/344 (15%)
Query: 38 ERLEKAASRKEEIISQ-------RLQDYAQSQANNLHNLIAQLFQDLEDEKKRVKNADMG 90
++LE +RKE + + +L D Q Q + L+ L +LE E+K ++
Sbjct: 1144 QKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERK-----ELA 1198
Query: 91 AIKKQIEAYEKLSGNIEIGFREAYEEFIFHF-IKNTRDGLNETLTKAIQKASA-----LA 144
+ I A KLS ++E +E+ ++ + + ++ ++ K++ +A L
Sbjct: 1199 HVNSAIGAQTKLSDDLECQ-KESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQ 1257
Query: 145 REEEEEERYTERVKQGGLFGSFKRNFLWWADDDAGYDEVSRTRATIKAGAVLDYLTEMHE 204
RE+E ++ + +K + D E+++ + +A L ++ +
Sbjct: 1258 REKESAQQLVDNLK---------------VELDKERKELAQVNSAFEAQTKL---SDDLQ 1299
Query: 205 RCENALNDSADSFKVVFRKELYAKVFSQLREIISDD--LIDEVAFQK-SVMAVLDSIEF- 260
R + + D+ KV KE K +Q++ +I L D++ QK S ++D+++
Sbjct: 1300 REKESAQQLVDNLKVELDKE--RKELAQVKSVIEAQTKLSDDLQRQKESAQQLVDNLKVE 1357
Query: 261 --KEFDYTDKLPSEIRGKTGFLKGDEADAFIQSVGNYVRNFESEAKKDVKGYIQGLREAL 318
KE K+ S I +T D+ +S V N + E K+ K Q + A
Sbjct: 1358 LDKERKELAKVKSVIEAQTKL--SDDLQRQKESAQQLVDNLKVELDKERKELAQ-VNSAF 1414
Query: 319 ERQNFASDTLQKLKENMQ----NLQNQVQNKEQSIAQLDAQIQA 358
E Q SD LQ+ KE+ Q NL+ ++ + + +AQ+ + I A
Sbjct: 1415 EAQTKLSDDLQRQKESAQQLVDNLKVELDKERKELAQVKSAIGA 1458
Score = 48.1 bits (113), Expect = 2e-04
Identities = 81/344 (23%), Positives = 153/344 (43%), Gaps = 57/344 (16%)
Query: 37 KERLEKAASRKEEIISQRLQDYAQSQANNLHNLIAQLFQDLEDEKKRVKNADMGAIKKQI 96
KER E A +L D + Q + L+ L +LE E+K ++ +K I
Sbjct: 1192 KERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERK-----ELAQVKSVI 1246
Query: 97 EAYEKLSGNIEIGFREAYEEFIFHFIKNTRDGLNETLTKAIQKASA----------LARE 146
EA KLS +++ RE +E + N + L++ + Q SA L RE
Sbjct: 1247 EAQTKLSDDLQ---RE--KESAQQLVDNLKVELDKERKELAQVNSAFEAQTKLSDDLQRE 1301
Query: 147 EEEEERYTERVKQGGLFGSFKRNFLWWADDDAGYDEVSRTRATIKAGAVLDYLTEMHERC 206
+E ++ + +K + D E+++ ++ I+A L++ +R
Sbjct: 1302 KESAQQLVDNLK---------------VELDKERKELAQVKSVIEAQT---KLSDDLQRQ 1343
Query: 207 ENALNDSADSFKVVF---RKELYAKVFS--QLREIISDDLIDEVAFQKSVMAVLDSIEF- 260
+ + D+ KV RKEL AKV S + + +SDDL + ++S ++D+++
Sbjct: 1344 KESAQQLVDNLKVELDKERKEL-AKVKSVIEAQTKLSDDLQRQ---KESAQQLVDNLKVE 1399
Query: 261 --KEFDYTDKLPSEIRGKTGFLKGDEADAFIQSVGNYVRNFESEAKKDVKGYIQGLREAL 318
KE ++ S +T D+ +S V N + E K+ K Q ++ A+
Sbjct: 1400 LDKERKELAQVNSAFEAQTKL--SDDLQRQKESAQQLVDNLKVELDKERKELAQ-VKSAI 1456
Query: 319 ERQNFASDTLQKLKENMQ----NLQNQVQNKEQSIAQLDAQIQA 358
Q SD L+ KE++Q NL+ +++ + + +A++++ +A
Sbjct: 1457 GAQTKLSDDLECQKESVQQLVDNLKVELEKERKELAKVNSAFEA 1500
>ref|NP_536743.1| (NM_080495) mushroom body defect [Drosophila melanogaster]
gb|AAF88146.1|AF174134_1 (AF174134) Mud protein [Drosophila melanogaster]
Length = 2501
Score = 46.2 bits (108), Expect = 6e-04
Identities = 76/342 (22%), Positives = 147/342 (42%), Gaps = 48/342 (14%)
Query: 38 ERLEKAASRKEEIISQ-------RLQDYAQSQANNLHNLIAQLFQDLEDEKKRVKNADMG 90
++LE +RKE + + +L D Q Q + L+ L +LE E+K ++
Sbjct: 1144 QKLELDMNRKELALVKSAYEAQTKLSDDLQRQKESGQQLVDNLKVELEKERK-----ELA 1198
Query: 91 AIKKQIEAYEKLSGNIEIGFREAYEEFIFHF-IKNTRDGLNETLTKAIQKASA-----LA 144
+ I A KLS ++E +E+ ++ + + ++ ++ K++ +A L
Sbjct: 1199 HVNSAIGAQTKLSDDLECQ-KESGQQLVDNLKVELEKERKELAQVKSVIEAQTKLSDDLQ 1257
Query: 145 REEEEEERYTERVKQGGLFGSFKRNFLWWADDDAGYDEVSRTRATIKAGAVLDYLTEMHE 204
RE+E ++ + +K + D E+++ + +A L ++ +
Sbjct: 1258 REKESAQQLVDNLK---------------VELDKERKELAQVNSAFEAQTKL---SDDLQ 1299
Query: 205 RCENALNDSADSFKVVFRKEL--YAKVFS--QLREIISDDLIDEVAFQKSVMAVLDSIEF 260
R + + D+ KV KE AKV S + + +SDDL E + ++ L
Sbjct: 1300 RQKESAQQLVDNLKVELEKERKELAKVNSAFEAQTKLSDDLQLEKDLAQQLVDTLKVELD 1359
Query: 261 KEFDYTDKLPSEIRGKTGFLKGDEADAFIQSVGNYVRNFESEAKKDVKGYIQGLREALER 320
KE ++ S +T D+ +S V N + E K+ K Q ++ +E
Sbjct: 1360 KERKELAQVNSPFEAQTKL--SDDLQRQKESAQQLVDNLKVELDKERKELAQ-VKSVIEA 1416
Query: 321 QNFASDTLQKLKENMQ----NLQNQVQNKEQSIAQLDAQIQA 358
Q SD LQ+ KE+ Q NL+ ++ + + +AQ+ + I A
Sbjct: 1417 QTKLSDDLQRQKESAQQLVDNLEMELDKERKELAQVKSAIGA 1458
Score = 45.4 bits (106), Expect = 0.001
Identities = 75/331 (22%), Positives = 149/331 (44%), Gaps = 31/331 (9%)
Query: 37 KERLEKAASRKEEIISQRLQDYAQSQANNLHNLIAQLFQDLEDEKKRVKNADMGAIKKQI 96
KER E A +L D + Q + L+ L +LE E+K ++ +K I
Sbjct: 1192 KERKELAHVNSAIGAQTKLSDDLECQKESGQQLVDNLKVELEKERK-----ELAQVKSVI 1246
Query: 97 EAYEKLSGNIEIGFREAYEEFIFHFIKNTRDGLNETLTKAIQKASALAREEEEEERYTER 156
EA KLS +++ +E+ ++ + + +K D + L + A + ++ +R E
Sbjct: 1247 EAQTKLSDDLQ-REKESAQQLVDN-LKVELDKERKELAQVNSAFEAQTKLSDDLQRQKES 1304
Query: 157 VKQGGLFGSFKRNFLWWADDDAGYDEVSRTRATIKAGAVLDYLTEMHERCENALNDSADS 216
+Q L + K + + E+++ + +A L ++ + L D+
Sbjct: 1305 AQQ--LVDNLK------VELEKERKELAKVNSAFEAQTKLSDDLQLEKDLAQQLVDTLKV 1356
Query: 217 FKVVFRKELYAKVFS--QLREIISDDLIDEVAFQKSVMAVLDSIEF---KEFDYTDKLPS 271
RKEL A+V S + + +SDDL + ++S ++D+++ KE ++ S
Sbjct: 1357 ELDKERKEL-AQVNSPFEAQTKLSDDLQRQ---KESAQQLVDNLKVELDKERKELAQVKS 1412
Query: 272 EIRGKTGFLKGDEADAFIQSVGNYVRNFESEAKKDVKGYIQGLREALERQNFASDTLQKL 331
I +T D+ +S V N E E K+ K Q ++ A+ Q SD L+
Sbjct: 1413 VIEAQTKL--SDDLQRQKESAQQLVDNLEMELDKERKELAQ-VKSAIGAQTKLSDDLECQ 1469
Query: 332 KENMQ----NLQNQVQNKEQSIAQLDAQIQA 358
KE++Q NL+ +++ + + +A++++ +A
Sbjct: 1470 KESVQQLVDNLKVELEKERKELAKVNSAFEA 1500
>sp|P08799|MYS2_DICDI Myosin II heavy chain, non muscle
pir||A26655 myosin heavy chain [similarity] - slime mold (Dictyostelium
discoideum)
gb|AAA33227.1| (M14628) myosin heavy chain [Dictyostelium discoideum]
Length = 2116
Score = 45.1 bits (105), Expect = 0.001
Identities = 69/358 (19%), Positives = 167/358 (46%), Gaps = 51/358 (14%)
Query: 19 SVDKSEESLLFLSN-MGAIKERLEKAASRKEEIISQR--LQDYAQSQANNLHNLIAQLFQ 75
S+ +E ++L L + A KE L+ K+ + +Q+ L+ + + L L +
Sbjct: 857 SLKDTESNVLDLQRQLKAEKETLKAMYDSKDALEAQKRELEIRVEDMESELDEKKLAL-E 915
Query: 76 DLEDEKKRVKNADMGAIKKQIEAYEKLSGNIEIGFREAYEEFIFHFIKNTRDGLNETLTK 135
+L+++K+ V+ + ++++++ +KL +E ++ YEE + +K DG ++T+++
Sbjct: 916 NLQNQKRSVEEK-VRDLEEELQEEQKLRNTLE-KLKKKYEEELEE-MKRVNDGQSDTISR 972
Query: 136 AIQKASALAREEEE-EERYTERVKQGGLFGSFKRNFLWWADDDAGYDEVSRTRATIKAGA 194
+ L +E EE E ++E K G+ + +TR +++
Sbjct: 973 LEKIKDELQKEVEELTESFSEESKDKGV--------------------LEKTRVRLQSE- 1011
Query: 195 VLDYLTEMHERCENALNDSADSFKVVFRKELYAKVFSQLREIISDDLIDEVAFQKSVMAV 254
LD LT + +++ D +++ +K+ + Q++E ++ + ++A + A
Sbjct: 1012 -LDDLTVRLD------SETKDKSELLRQKKKLEEELKQVQEALAAETAAKLAQE----AA 1060
Query: 255 LDSIEFKEFDYTDKLPSEIRGKTGFLKGDEA-DAFIQSVGNYV------RNFESEAKKDV 307
++ + + +K SE+ ++ K + ++ + +V N + R+ + KK +
Sbjct: 1061 NKKLQGEYTELNEKFNSEVTARSNVEKSKKTLESQLVAVNNELDEEKKNRDALEKKKKAL 1120
Query: 308 KGYIQGLREALERQNFASDTLQKLK----ENMQNLQNQVQNKEQSIAQLDAQIQALKG 361
++ +++ LE +L LK +M+ L+NQ+ + +IA+L+ L+G
Sbjct: 1121 DAMLEEMKDQLESTGGEKKSLYDLKVKQESDMEALRNQISELQSTIAKLEKIKSTLEG 1178
>gb|AAM69078.1|U64862_3 (U64862) Hypothetical protein ZC8.4a [Caenorhabditis elegans]
Length = 2396
Score = 45.1 bits (105), Expect = 0.001
Identities = 77/353 (21%), Positives = 140/353 (38%), Gaps = 34/353 (9%)
Query: 24 EESLLFLSNMGAIKERLEKAASRKEEIISQRLQDYAQSQANNLHNLIAQLFQDLEDEKKR 83
+E L N + RL+K + + IS + +++ N+ D+K R
Sbjct: 631 KEFLNKFENADEARRRLDKQFADAKREISNLQKSVDEAERNSRRT----------DDKLR 680
Query: 84 VKNADMGAIKKQIEAYEKLSGNIEIGFREAYEEFIFHFIKNTRDGLNETLTKAIQKASAL 143
A+ A +K + E ++ F+++ + + RD ++E T +IQ+
Sbjct: 681 ASEAERVAAEKARKFLEDELAKLQASFQKSSTDDA----RKLRDEMDEH-TNSIQEEFK- 734
Query: 144 AREEEEEERYTERVKQGGLFGSFKRNFLWWADDDAGYDEVSRTRATIKAGAVLDYLTEMH 203
R +E R +++ S + N L D + S R + + Y ++
Sbjct: 735 TRIDELNRRVENLLRENNRLKS-EVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIR 793
Query: 204 ERCENALNDSADSFKVVF---RKELYAKVFSQLREIISDDLIDEVAFQKS-VMAVLDSIE 259
+ L+D + + V K L +Q +++ + E+ Q+ D
Sbjct: 794 RNIQKDLDDLREKYDRVHTDNEKILGELEHAQKAAHLAEQQLKEIKIQRDDYQKQKDEHA 853
Query: 260 FKEFDYTDKLPSEIRG-----KTGFLKGDEADAFIQSVGNY------VRNFESEAKKDVK 308
FD KL +EI+G K G DE D Q++ +Y +R E +K
Sbjct: 854 RHLFDIRHKLETEIKGRQDLEKNGARNNDELDKLRQTISDYESQINLLRRHNDELDTTIK 913
Query: 309 GYIQGLREALERQ-NFASDTLQKLKENMQNLQNQVQNKEQSIAQLDAQIQALK 360
G+ QG LE + + S ++KL + Q LQ + Q+ +LD +QALK
Sbjct: 914 GH-QGKITHLENELHSRSGEIEKLNDLNQRLQKEKQDILNQKLKLDGDVQALK 965
>ref|NP_508847.1| (NM_076446) ZC8.4b.p [Caenorhabditis elegans]
gb|AAK67253.1|U64862_4 (U64862) Hypothetical protein ZC8.4b [Caenorhabditis elegans]
Length = 2315
Score = 45.1 bits (105), Expect = 0.001
Identities = 77/353 (21%), Positives = 140/353 (38%), Gaps = 34/353 (9%)
Query: 24 EESLLFLSNMGAIKERLEKAASRKEEIISQRLQDYAQSQANNLHNLIAQLFQDLEDEKKR 83
+E L N + RL+K + + IS + +++ N+ D+K R
Sbjct: 523 KEFLNKFENADEARRRLDKQFADAKREISNLQKSVDEAERNSRRT----------DDKLR 572
Query: 84 VKNADMGAIKKQIEAYEKLSGNIEIGFREAYEEFIFHFIKNTRDGLNETLTKAIQKASAL 143
A+ A +K + E ++ F+++ + + RD ++E T +IQ+
Sbjct: 573 ASEAERVAAEKARKFLEDELAKLQASFQKSSTDDA----RKLRDEMDEH-TNSIQEEFK- 626
Query: 144 AREEEEEERYTERVKQGGLFGSFKRNFLWWADDDAGYDEVSRTRATIKAGAVLDYLTEMH 203
R +E R +++ S + N L D + S R + + Y ++
Sbjct: 627 TRIDELNRRVENLLRENNRLKS-EVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIR 685
Query: 204 ERCENALNDSADSFKVVF---RKELYAKVFSQLREIISDDLIDEVAFQKS-VMAVLDSIE 259
+ L+D + + V K L +Q +++ + E+ Q+ D
Sbjct: 686 RNIQKDLDDLREKYDRVHTDNEKILGELEHAQKAAHLAEQQLKEIKIQRDDYQKQKDEHA 745
Query: 260 FKEFDYTDKLPSEIRG-----KTGFLKGDEADAFIQSVGNY------VRNFESEAKKDVK 308
FD KL +EI+G K G DE D Q++ +Y +R E +K
Sbjct: 746 RHLFDIRHKLETEIKGRQDLEKNGARNNDELDKLRQTISDYESQINLLRRHNDELDTTIK 805
Query: 309 GYIQGLREALERQ-NFASDTLQKLKENMQNLQNQVQNKEQSIAQLDAQIQALK 360
G+ QG LE + + S ++KL + Q LQ + Q+ +LD +QALK
Sbjct: 806 GH-QGKITHLENELHSRSGEIEKLNDLNQRLQKEKQDILNQKLKLDGDVQALK 857
>ref|NP_508848.1| (NM_076447) probable myofibrillar protein [Caenorhabditis elegans]
pir||T29999 hypothetical protein ZC8.4 - Caenorhabditis elegans
Length = 2288
Score = 45.1 bits (105), Expect = 0.001
Identities = 77/353 (21%), Positives = 140/353 (38%), Gaps = 34/353 (9%)
Query: 24 EESLLFLSNMGAIKERLEKAASRKEEIISQRLQDYAQSQANNLHNLIAQLFQDLEDEKKR 83
+E L N + RL+K + + IS + +++ N+ D+K R
Sbjct: 523 KEFLNKFENADEARRRLDKQFADAKREISNLQKSVDEAERNSRRT----------DDKLR 572
Query: 84 VKNADMGAIKKQIEAYEKLSGNIEIGFREAYEEFIFHFIKNTRDGLNETLTKAIQKASAL 143
A+ A +K + E ++ F+++ + + RD ++E T +IQ+
Sbjct: 573 ASEAERVAAEKARKFLEDELAKLQASFQKSSTDDA----RKLRDEMDEH-TNSIQEEFK- 626
Query: 144 AREEEEEERYTERVKQGGLFGSFKRNFLWWADDDAGYDEVSRTRATIKAGAVLDYLTEMH 203
R +E R +++ S + N L D + S R + + Y ++
Sbjct: 627 TRIDELNRRVENLLRENNRLKS-EVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIR 685
Query: 204 ERCENALNDSADSFKVVF---RKELYAKVFSQLREIISDDLIDEVAFQKS-VMAVLDSIE 259
+ L+D + + V K L +Q +++ + E+ Q+ D
Sbjct: 686 RNIQKDLDDLREKYDRVHTDNEKILGELEHAQKAAHLAEQQLKEIKIQRDDYQKQKDEHA 745
Query: 260 FKEFDYTDKLPSEIRG-----KTGFLKGDEADAFIQSVGNY------VRNFESEAKKDVK 308
FD KL +EI+G K G DE D Q++ +Y +R E +K
Sbjct: 746 RHLFDIRHKLETEIKGRQDLEKNGARNNDELDKLRQTISDYESQINLLRRHNDELDTTIK 805
Query: 309 GYIQGLREALERQ-NFASDTLQKLKENMQNLQNQVQNKEQSIAQLDAQIQALK 360
G+ QG LE + + S ++KL + Q LQ + Q+ +LD +QALK
Sbjct: 806 GH-QGKITHLENELHSRSGEIEKLNDLNQRLQKEKQDILNQKLKLDGDVQALK 857
>ref|NP_446205.1| (NM_053753) Kupffer cell receptor [Rattus norvegicus]
sp|P10716|KUCR_RAT Kupffer cell receptor
pir||A28166 Kupffer cell receptor - rat
gb|AAA40892.1| (M55532) carbohydrate-binding receptor [Rattus norvegicus]
gb|AAA41472.1| (J03734) Kupffer cell receptor [Rattus norvegicus]
Length = 550
Score = 45.1 bits (105), Expect = 0.001
Identities = 26/94 (27%), Positives = 48/94 (50%), Gaps = 9/94 (9%)
Query: 267 DKLPSEIRGKTGFLKGDEADAFIQSVGNYVRNFESEAKKDVKGYIQGLREALERQNFASD 326
++ SEI+ G L+ +G+ +NF + ++ IQ +R+ ++R A +
Sbjct: 222 EEAQSEIQALRGSLQSSN------DLGSRTQNFLQHSMDNISAEIQAMRDGMQR---AGE 272
Query: 327 TLQKLKENMQNLQNQVQNKEQSIAQLDAQIQALK 360
+ LK++++ L Q+QN + Q D QIQ LK
Sbjct: 273 EMTSLKKDLETLTAQIQNANGHLEQTDTQIQGLK 306
>gb|AAD28718.2|AF112359_1 (AF112359) myosin heavy chain A [Schmidtea mediterranea]
Length = 1344
Score = 44.7 bits (104), Expect = 0.002
Identities = 76/346 (21%), Positives = 145/346 (40%), Gaps = 28/346 (8%)
Query: 36 IKERLEKAASRKEEIISQRLQDYAQSQANNLHNLIAQLFQD---LEDEKKRVKNADMGAI 92
+K LE+A + E+ + Q ++ Q +N + + QL + +E EK ++ AD+ +
Sbjct: 564 LKRDLEEANMQHEQALVQ-MRKKQQDTSNEFADQLDQLQKSKSKIEREKSELR-ADIEDL 621
Query: 93 KKQIEAYEKLSGNIEIGFREAYEEFIFHFIKNTRDGLNETLTKAIQKASALAREEEEEER 152
Q+E+ K GN+E +A E + ++N D L+ LT+A + E E +
Sbjct: 622 SSQLESLNKTKGNLEKS-NKALETTVSD-LQNKLDELSRQLTEAGNVNNRNQHENSEMHK 679
Query: 153 YTERVK-QGGLFGSFKRNFLWWADD-DAGYDEVSRTRATIK-----AGAVLDYLTEMHER 205
E + Q G K+ ++ ++ SR +A + A + LD L E E
Sbjct: 680 TLEDAESQINQLGKAKQQLQAQLEEAKQNLEDESRAKAKLNGDLRNAMSDLDALRESLEE 739
Query: 206 CENALNDSADSFKVVFRKELYAKVFSQLREIISDDLIDEVAFQKSVMAVLDSIEFKEFDY 265
+ +D V + K SQ + + ++E F++ + A + +E +E +
Sbjct: 740 EQEGKSDVQRQLVKVQXELQQLKANSQGTGGVRTEEMEE--FRRKMNARIQELEEEESES 797
Query: 266 TDKLPSEIRGKTGFLKGDEADAFIQ-SVGNYVRNFESEAKKDVKGYI-----------QG 313
S++ L+G+ D I N + + + +K+V I Q
Sbjct: 798 NKSKCSQLEKMKSRLQGEIEDLVIDVERANGLASQLEKKQKNVDKLIGEWQKKYSESQQE 857
Query: 314 LREALERQNFASDTLQKLKENMQNLQNQVQNKEQSIAQLDAQIQAL 359
L +L S + KLK ++N Q+Q+++ + L +I L
Sbjct: 858 LEVSLRESRTVSAEVFKLKSQLENSQDQIESLRRENKNLSDEIHDL 903
>emb|CAB62239.1| (AJ243902) P75 protein [Mycoplasma hominis]
Length = 654
Score = 44.3 bits (103), Expect = 0.002
Identities = 69/360 (19%), Positives = 146/360 (40%), Gaps = 59/360 (16%)
Query: 22 KSEESLLFLSNMGAIKERLEKAASRKEEIISQRLQDYAQSQANNLHNLIAQL---FQDLE 78
K ES L LS + A+KE + S+ S + L N IA++ QD+
Sbjct: 58 KEVESKLDLSKLNALKEEYKTINSK--------------SNVSELKNFIAKINETVQDIN 103
Query: 79 DEKKRVKNADMGAIKK---QIEAYEKLSGNIEIGFREAYEEFIFHFIKNTRDGLNETL-- 133
+ ++KN + + Q + +KL +EI + + + ++ + N ++
Sbjct: 104 AQISKLKNINGNTSPENNSQNDLLKKLKAELEIATTK------LNMLLSSNESKNISIKE 157
Query: 134 -TKAIQKASALAREEEEEERYTERVKQGGLFGSFKRNFLWWADDDAGYDEVSRTRATIKA 192
K I A+ A E+ E+ Y ++++ + D++ + + ++
Sbjct: 158 EAKNILNAANKALEKSNEQEYKNQIQKV----------------NETIDKIEKEISNLEK 201
Query: 193 GAVLDYLTEMHERCENALNDSADSFKVVFRKELYAKVFSQLREIISDDLI-DEVAFQKSV 251
G T++ E E N +F K+L A++ +++ + ++ +E + ++
Sbjct: 202 GPKSKEFTKLKELREKLANYLNSNFSEFAYKDLRAEIKELIQKQENVSIVSNEKEIKSAI 261
Query: 252 MAVLD---------SIEFKEFDYTDKLP-SEIRGKTGFLKGDEADAFIQSVGNYVR--NF 299
M + D SI K+F Y + P SE+ K + + A S+ + N
Sbjct: 262 MQINDIFWIANIKKSILDKQFLYLENKPKSELDVKFLAAHDELSQALNTSIFENIETTNE 321
Query: 300 ESEAKKDVKGYIQGLREALERQNFASDTLQKLKENMQNLQNQVQNKEQSIAQLDAQIQAL 359
+ K +K + + +E+QN+ + + + N + N E I++L+ I+ L
Sbjct: 322 RNLLNKYIKTNLTKISN-VEKQNYIEEVKNTINSLLNKYNNNINNNEDKISELNRNIEQL 380
>dbj|BAB71249.1| (AK056673) unnamed protein product [Homo sapiens]
Length = 883
Score = 42.7 bits (99), Expect = 0.007
Identities = 63/326 (19%), Positives = 135/326 (41%), Gaps = 44/326 (13%)
Query: 41 EKAASRKEEIISQRLQDY-----AQSQANNLHNLIAQLFQDLEDEKKRVKNADMGAIKKQ 95
+ A RK ++ +++Q +Q NN +DL ++K ++ ++ +++Q
Sbjct: 571 DDATKRKVNLVFEKIQTLKSRAAGSAQGNNQACNSTSEVKDLLEQKSKL-TIEVAELQRQ 629
Query: 96 IEAYEKLSGNIEIGFREAYEEFIFHFIKNTRDGLNETLTKAIQKASALAREEEEEERYTE 155
++ K NI +E E ++ + L + +++ S L + EE E
Sbjct: 630 LQLEVKNQQNI----KEERER-----MRANLEELRSQHNEKVEENSTLQQRLEESE---- 676
Query: 156 RVKQGGLFGSFKRNFLWWADDDAGYDEVSRTRATIKAGAVLDYLTEMHERCENALNDSAD 215
G ++N ++ ++ R + + + D L+EMH+ ++A
Sbjct: 677 --------GELRKNL-----EELFQVKMEREQHQTEIRDLQDQLSEMHDELDSAKRSEDR 723
Query: 216 SFKVVFRKELYAKVFSQLREIISDDLIDEVAFQKSVMAVLDSIEFKEFDYTDKLPSEIRG 275
+ + L AK Q I ++ D + ++ + L +E D+ +++
Sbjct: 724 EKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLK- 782
Query: 276 KTGFLKGDEADAFIQSVGNYVRNFESEAKKDVKGYIQGLREALERQNFASDTLQKLKENM 335
++ DA +Q++ R EA K+V+ + + Q ++ L+E
Sbjct: 783 -------EQYDAELQAL----RESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEEN 831
Query: 336 QNLQNQVQNKEQSIAQLDAQIQALKG 361
+NLQ + + E+ +AQL QI+ LKG
Sbjct: 832 ENLQGRSEELERRVAQLQRQIEDLKG 857
>ref|NP_599220.1| (NM_134393) outer dense fiber ODF3 [Rattus norvegicus]
gb|AAC72233.2| (AF092090) outer dense fiber ODF3 [Rattus norvegicus]
Length = 971
Score = 42.4 bits (98), Expect = 0.009
Identities = 78/355 (21%), Positives = 161/355 (44%), Gaps = 35/355 (9%)
Query: 31 SNMGAIKERLEKAASR---KEEIISQRLQDYAQSQANNLHNLIAQLFQDLEDEKKRVKNA 87
S + +KE LE+A + ++ +SQ +D A ANNL + +L L +K+ K+
Sbjct: 424 SEIQKLKESLEEAREQLRVSDQNLSQ-CKDEAHLSANNLEDAHRKLENCLLQDKR--KDD 480
Query: 88 DMGAIKKQIEAYEKLSGNIEIGFREAYEEFIFHFIKNTRDGLNETLTKAIQKASALAREE 147
+ ++ Q++ +K S E R+ + + +G L+ A ++ S L +
Sbjct: 481 VIKDLQSQLQKLQKESSETEEE-RKNNRQQLLELSSELNEG-QRRLSSAEKEKSLLQKTL 538
Query: 148 EEEERYTERVKQGGLFGSFKRNFLWWADDDAGYDEVSRTRATIKAGAVLDYLTEMHERCE 207
+EEE+ + + G K+ L + DE++ T+ ++ + L + ++ E
Sbjct: 539 DEEEKKIDELLHGAKVSEQKQRELTNSLSKL-QDELAETKRLLEEKR--EQLRKSKDQ-E 594
Query: 208 NALNDSADSFKVVFRK-ELYAKVFSQLREIISDDLIDEVAFQKSVMAVLDSIEFKEFDYT 266
AL + ++ + +K E AK QLR++ ++ + A S + LDS +++ +
Sbjct: 595 KALEEEIEALRQESKKKEKMAK--EQLRKL-EEEKENLQAELSSCSSQLDS-SINKYNNS 650
Query: 267 DKLPSEIRGKTGFLKGD------EADAFIQSVGNYVRNFESEAKKDV----KGYIQG-LR 315
K+ E+ + K + D+ IQ N +N S+ + G Q L
Sbjct: 651 QKVIQELNTEIARQKDSIMILQTQLDSAIQKEKNCFQNMVSKETYEELLRKSGTCQDDLT 710
Query: 316 EALERQNFASDTLQKLKENMQ-------NLQNQVQNKEQSIAQLDAQIQALKGIQ 363
+ALE+ A+ + L+ N+Q L++++ E+ + +L+ +++ L+G Q
Sbjct: 711 QALEKLTQATSETKSLQRNLQQTQERKAQLEDEIMAYEERMKKLNMELKKLQGFQ 765
>pir||T18296 myosin heavy chain - Entamoeba histolytica
gb|AAB48065.1| (L03534) myosin heavy chain [Entamoeba histolytica]
Length = 2139
Score = 42.4 bits (98), Expect = 0.009
Identities = 74/352 (21%), Positives = 149/352 (42%), Gaps = 58/352 (16%)
Query: 34 GAIKERLEKAASRKEEIISQRLQDYAQSQANNLHNLIAQLFQDLEDEKKRVKNADMGAIK 93
G ++ +++ + E+ S+ Q NL I L +D E+ K+ + N G +K
Sbjct: 899 GELEAKIQDLEDKISELESKLSAAELDKQELNLK--IENLEEDKEELKETIDNLK-GDLK 955
Query: 94 KQIEAYEKLSG-NIEIGFREAYEEFIFHFIKNTRDGLNETLTKAIQKASALAREEEEEER 152
KL G ++E+ E + NT LN T+ K + + + +E+E
Sbjct: 956 DS-----KLKGEDLEVEITELNSQI------NT---LNATVDKKDKTIAEMQESIDEKED 1001
Query: 153 YTERVKQGGLFGSFKRNFLWW--ADDDAGYDEVSR--TRATIKAGAVLDYLTEMHERCEN 208
++K +++ L AD A D++++ + TI+ D + ++ + E+
Sbjct: 1002 EITKLKGDIKLLEEEKDDLEQDRADVSATKDDIAKKLNKITIECEDAKDEIAKLEQELED 1061
Query: 209 ALNDSADSFKVVFRKELY--------------AKVFSQLREIISDDLIDEVAFQKSVMAV 254
N + D + + +L K S R+ +S +L +E K++
Sbjct: 1062 EENKNKDLTNELQQTQLKLGETEKSLAAQVAATKKASDERDTLSQNLENEKLTTKNLTKT 1121
Query: 255 LDSIEFK----EFDYTDKLPSEIRGKTGFLKGDEADAFIQSVGNYVRNFESEAKK--DVK 308
+E K + DY D + ++GD +++ ++ + E K DV
Sbjct: 1122 KADLEKKISGLKQDYED-----LEDDKNKIEGD-----LRNAQRKIKELDDEITKGADVS 1171
Query: 309 GYIQGLREALERQNFASDTLQKLKENMQNLQNQVQNKEQSIAQLDAQIQALK 360
Y+Q +E E Q + K++E + + N V+NKE++I + + +IQ+L+
Sbjct: 1172 QYLQKQKEEYESQ------IAKMQEEKEAIGNDVKNKEKTIKEKELEIQSLQ 1217
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.315 0.132 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202,281,917
Number of Sequences: 1026957
Number of extensions: 8106029
Number of successful extensions: 39953
Number of sequences better than 1.0e-02: 16
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 39880
Number of HSP's gapped (non-prelim): 58
length of query: 363
length of database: 324,149,939
effective HSP length: 122
effective length of query: 241
effective length of database: 198,861,185
effective search space: 47925545585
effective search space used: 47925545585
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 98 (42.4 bits)