BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645586|ref|NP_207762.1| hypothetical protein
[Helicobacter pylori 26695]
(413 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207762.1| (NC_000915) hypothetical protein [Helicoba... 801 0.0
ref|NP_223623.1| (NC_000921) putative [Helicobacter pylori ... 773 0.0
ref|NP_065029.1| (NC_002520) Hypothetical protein [Amsacta ... 43 0.006
>ref|NP_207762.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64641 nickel and cobalt resistance protein - Helicobacter pylori (strain
26695)
gb|AAD08018.1| (AE000605) H. pylori predicted coding region HP0971 [Helicobacter
pylori 26695]
Length = 413
Score = 801 bits (2069), Expect = 0.0
Identities = 413/413 (100%), Positives = 413/413 (100%)
Query: 1 MSMFSAGMLSAKIFTLQEFFKEVEINSMELIGKKADFKSRLNEQRSVNAWDFPYIENETS 60
MSMFSAGMLSAKIFTLQEFFKEVEINSMELIGKKADFKSRLNEQRSVNAWDFPYIENETS
Sbjct: 1 MSMFSAGMLSAKIFTLQEFFKEVEINSMELIGKKADFKSRLNEQRSVNAWDFPYIENETS 60
Query: 61 MVKNFQGIIEAQPRTLLVVRPKLPWVSSLLSKSLSIKTIQYDKSYQLNKNLAFIGAKRLY 120
MVKNFQGIIEAQPRTLLVVRPKLPWVSSLLSKSLSIKTIQYDKSYQLNKNLAFIGAKRLY
Sbjct: 61 MVKNFQGIIEAQPRTLLVVRPKLPWVSSLLSKSLSIKTIQYDKSYQLNKNLAFIGAKRLY 120
Query: 121 LTYVMTKEKYQVYVQREANFYSQLKIAKEKVKAGSMSEKDYINFNNSYLESKLAKTNVET 180
LTYVMTKEKYQVYVQREANFYSQLKIAKEKVKAGSMSEKDYINFNNSYLESKLAKTNVET
Sbjct: 121 LTYVMTKEKYQVYVQREANFYSQLKIAKEKVKAGSMSEKDYINFNNSYLESKLAKTNVET 180
Query: 181 KLIDLEKMLDTMLAIVEPVKEGAHFDTYLDHLHDVKVIGLDFEYVRLEPEALKFKLDRSL 240
KLIDLEKMLDTMLAIVEPVKEGAHFDTYLDHLHDVKVIGLDFEYVRLEPEALKFKLDRSL
Sbjct: 181 KLIDLEKMLDTMLAIVEPVKEGAHFDTYLDHLHDVKVIGLDFEYVRLEPEALKFKLDRSL 240
Query: 241 YVDILDLTAKDYQVNAKLANRDVFNAFEFGIGSESYNSSTNLSVEVRIPLPVTPKNIYQK 300
YVDILDLTAKDYQVNAKLANRDVFNAFEFGIGSESYNSSTNLSVEVRIPLPVTPKNIYQK
Sbjct: 241 YVDILDLTAKDYQVNAKLANRDVFNAFEFGIGSESYNSSTNLSVEVRIPLPVTPKNIYQK 300
Query: 301 RKFLDLQSGTLAQNEVMKRNIRINANSYLNQLKTKEAYIETQKEAIANKKRLMEMGRIAY 360
RKFLDLQSGTLAQNEVMKRNIRINANSYLNQLKTKEAYIETQKEAIANKKRLMEMGRIAY
Sbjct: 301 RKFLDLQSGTLAQNEVMKRNIRINANSYLNQLKTKEAYIETQKEAIANKKRLMEMGRIAY 360
Query: 361 EAQKIGLFEYLIYQNSYMDALITLAEAKIEYIDISALLEETLGESLTRLGELH 413
EAQKIGLFEYLIYQNSYMDALITLAEAKIEYIDISALLEETLGESLTRLGELH
Sbjct: 361 EAQKIGLFEYLIYQNSYMDALITLAEAKIEYIDISALLEETLGESLTRLGELH 413
>ref|NP_223623.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71874 hypothetical protein jhp0905 - Helicobacter pylori (strain J99)
gb|AAD06478.1| (AE001519) putative [Helicobacter pylori J99]
Length = 431
Score = 773 bits (1995), Expect = 0.0
Identities = 396/408 (97%), Positives = 401/408 (98%)
Query: 6 AGMLSAKIFTLQEFFKEVEINSMELIGKKADFKSRLNEQRSVNAWDFPYIENETSMVKNF 65
AG L AK FTLQEFFKEVEINSMELIGKKADFKSRLNEQRSVNAWDFPYI NETSMVKNF
Sbjct: 24 AGTLDAKTFTLQEFFKEVEINSMELIGKKADFKSRLNEQRSVNAWDFPYIFNETSMVKNF 83
Query: 66 QGIIEAQPRTLLVVRPKLPWVSSLLSKSLSIKTIQYDKSYQLNKNLAFIGAKRLYLTYVM 125
QGI+EAQPRTLL+VRPKLPWVSSLLSKSLSIKTIQYDKSYQLNKNLAFIGAKRLYLTYVM
Sbjct: 84 QGIVEAQPRTLLMVRPKLPWVSSLLSKSLSIKTIQYDKSYQLNKNLAFIGAKRLYLTYVM 143
Query: 126 TKEKYQVYVQREANFYSQLKIAKEKVKAGSMSEKDYINFNNSYLESKLAKTNVETKLIDL 185
TKEKYQVY QREANFYSQLKIAKEKVKAGSMSEKDYINFNNSYLESKLAKTNVETKLIDL
Sbjct: 144 TKEKYQVYAQREANFYSQLKIAKEKVKAGSMSEKDYINFNNSYLESKLAKTNVETKLIDL 203
Query: 186 EKMLDTMLAIVEPVKEGAHFDTYLDHLHDVKVIGLDFEYVRLEPEALKFKLDRSLYVDIL 245
EKMLDTMLAIVEPVK+GAHFDTYLDHLHDVKVIGLDFEYVRLEPEALKFKLDRSLYVDIL
Sbjct: 204 EKMLDTMLAIVEPVKDGAHFDTYLDHLHDVKVIGLDFEYVRLEPEALKFKLDRSLYVDIL 263
Query: 246 DLTAKDYQVNAKLANRDVFNAFEFGIGSESYNSSTNLSVEVRIPLPVTPKNIYQKRKFLD 305
DLTAKDYQVNAKLANRDVFNAFEFGIGSESYNSSTNLS+EV IPLPVTPKNIYQKRKFLD
Sbjct: 264 DLTAKDYQVNAKLANRDVFNAFEFGIGSESYNSSTNLSIEVHIPLPVTPKNIYQKRKFLD 323
Query: 306 LQSGTLAQNEVMKRNIRINANSYLNQLKTKEAYIETQKEAIANKKRLMEMGRIAYEAQKI 365
LQSGTLAQNEVMKRNIRINANSYLNQLKTKEAYIETQKEAIANKKRLMEMGRIAYEAQKI
Sbjct: 324 LQSGTLAQNEVMKRNIRINANSYLNQLKTKEAYIETQKEAIANKKRLMEMGRIAYEAQKI 383
Query: 366 GLFEYLIYQNSYMDALITLAEAKIEYIDISALLEETLGESLTRLGELH 413
GLF+YLIYQNSYMDALITLAEAKIEYIDISALLEETLGESLTRLG LH
Sbjct: 384 GLFQYLIYQNSYMDALITLAEAKIEYIDISALLEETLGESLTRLGVLH 431
>ref|NP_065029.1| (NC_002520) Hypothetical protein [Amsacta moorei entomopoxvirus]
gb|AAG02953.1|AF250284_247 (AF250284) AMV247 [Amsacta moorei entomopoxvirus]
Length = 139
Score = 43.1 bits (100), Expect = 0.006
Identities = 33/117 (28%), Positives = 63/117 (53%), Gaps = 9/117 (7%)
Query: 123 YVMTKEKYQVYVQREANFYSQLKIAKEKVKAGSMSEKDYINFNNSYLESKLAKTNVETK- 181
+V+ K+K +Y++++ N +LK K+K K+G ++ YI NN Y+ + +E+K
Sbjct: 27 FVLCKDKCLIYIKKKYNSIKELK--KQKKKSGEVA---YIYKNNKYIIYIIIADYIESKV 81
Query: 182 -LIDLEKMLDTMLAIVEPVKEGAHFDTYLDHLHDVKVIGLDFEYVR-LEPEALKFKL 236
++++ + LD + I+E +K T H+ DV ++Y+R + PE L L
Sbjct: 82 NILNILRALDNLKIILEKLKI-TDIMTSRSHIEDVYETDKLYKYLREIMPEELNLYL 137
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.317 0.134 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 222,978,735
Number of Sequences: 1026957
Number of extensions: 8789903
Number of successful extensions: 25589
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 25583
Number of HSP's gapped (non-prelim): 4
length of query: 413
length of database: 324,149,939
effective HSP length: 124
effective length of query: 289
effective length of database: 196,807,271
effective search space: 56877301319
effective search space used: 56877301319
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 99 (42.7 bits)