BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645592|ref|NP_207768.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(487 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207768.1| (NC_000915) conserved hypothetical secrete... 951 0.0
ref|NP_223629.1| (NC_000921) putative [Helicobacter pylori ... 923 0.0
ref|NP_281866.1| (NC_002163) putative periplasmic protein [... 254 2e-66
emb|CAA65154.1| (X95910) orf1 [Campylobacter jejuni] 115 2e-24
ref|NP_406628.1| (NC_003143) peptidyl-prolyl cis-trans isom... 100 4e-20
ref|NP_231552.1| (NC_002505) peptidyl-prolyl cis-trans isom... 90 5e-17
ref|NP_246918.1| (NC_002663) unknown [Pasteurella multocida... 89 2e-16
sp|P44092|PPID_HAEIN Peptidyl-prolyl cis-trans isomerase D ... 87 3e-16
ref|NP_286183.1| (NC_002655) putative protease maturation p... 81 2e-14
ref|NP_414975.1| (NC_000913) putative protease maturation p... 81 3e-14
ref|NP_213414.1| (NC_000918) hypothetical protein [Aquifex ... 80 4e-14
ref|NP_459448.1| (NC_003197) peptidyl prolyl isomerase [Sal... 77 4e-13
ref|NP_455049.1| (NC_003198) peptidyl-prolyl cis-trans isom... 77 4e-13
ref|NP_439165.1| (NC_000907) peptidyl-prolyl cis-trans isom... 75 2e-12
ref|NP_519836.1| (NC_003295) PROBABLE PEPTIDYL-PROLYL CIS-T... 74 5e-12
ref|NP_250496.1| (NC_002516) peptidyl-prolyl cis-trans isom... 72 2e-11
ref|NP_660794.1| (NC_004061) peptidyl-prolyl cis-trans isom... 66 8e-10
ref|NP_636360.1| (NC_003902) peptidyl-prolyl cis-trans isom... 63 9e-09
ref|NP_641424.1| (NC_003919) peptidyl-prolyl cis-trans isom... 63 9e-09
ref|NP_102382.1| (NC_002678) peptidyl-prolyl cis-trans isom... 62 1e-08
pir||T46851 conserved hypothetical protein ybaU [imported] ... 60 6e-08
emb|CAA05330.1| (AJ002316) putative peptidyl-prolyl cis-tra... 60 8e-08
ref|NP_349811.1| (NC_003030) Parvulin-like peptidyl-prolyl ... 55 2e-06
ref|NP_539762.1| (NC_003317) PEPTIDYL-PROLYL CIS-TRANS ISOM... 55 2e-06
pir||A64505 P115 homolog - Methanococcus jannaschii 51 3e-05
ref|NP_248653.1| (NC_000909) chromosome segretation protein... 51 3e-05
ref|NP_240289.1| (NC_002528) peptidyl-prolyl cis-trans isom... 50 5e-05
ref|NP_274262.1| (NC_003112) peptidyl-prolyl cis-trans isom... 49 1e-04
ref|NP_284141.1| (NC_003116) putative peptidyl-prolyl cis-t... 49 1e-04
ref|NP_603419.1| (NC_003454) Exonuclease SBCC [Fusobacteriu... 49 1e-04
gb|EAA10144.1| (AAAB01008944) agCP15288 [Anopheles gambiae ... 49 1e-04
gb|AAH26864.1| (BC026864) Similar to meningioma expressed a... 47 5e-04
emb|CAD32690.1| (AJ488495) SMC4 protein [Oryza sativa] 47 5e-04
gb|AAK69701.1|AF356511_1 (AF356511) putative peptidyl-proly... 47 5e-04
gb|AAK17202.1|AF335500_1 (AF335500) major plasmodial myosin... 47 7e-04
gb|AAC13303.1| (AF056936) mature parasite-infected erythroc... 47 7e-04
ref|NP_298481.1| (NC_002488) peptidyl-prolyl cis-trans isom... 46 9e-04
ref|NP_214166.1| (NC_000918) putative protein [Aquifex aeol... 46 0.001
ref|NP_046584.1| (NC_001884) putative transglycosylase [Bac... 45 0.002
sp|Q96YR5|RA50_SULTO DNA double-strand break repair rad50 A... 45 0.002
ref|NP_378103.1| (NC_003106) 882aa long hypothetical purine... 45 0.002
gb|AAK97854.1|AF295804_1 (AF295804) rho coiled-coil associa... 45 0.002
dbj|BAB21900.1| (AB055276) hypothetical protein [Macaca fas... 45 0.003
ref|NP_069865.1| (NC_000917) purine NTPase, putative [Archa... 45 0.003
ref|NP_659473.1| (NM_145036) hypothetical protein MGC33887 ... 44 0.003
ref|XP_123485.1| (XM_123485) LaXp180 protein [Mus musculus] 43 0.007
sp|Q00798|RBP1_PLAVB RETICULOCYTE BINDING PROTEIN 1 PRECURS... 43 0.007
pir||A42771 reticulocyte-binding protein 1 - Plasmodium vivax 43 0.007
gb|AAF58087.2| (AE003808) CG18255-PD [Drosophila melanogaster] 43 0.010
gb|AAM70936.1| (AE003808) CG18255-PA [Drosophila melanogaster] 43 0.010
>ref|NP_207768.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||A64642 conserved hypothetical secreted protein HP0977 - Helicobacter
pylori (strain 26695)
gb|AAD08023.1| (AE000606) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 487
Score = 951 bits (2459), Expect = 0.0
Identities = 487/487 (100%), Positives = 487/487 (100%)
Query: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 60
MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 60
Query: 61 RRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAKE 120
RRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAKE
Sbjct: 61 RRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAKE 120
Query: 121 IRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPLEQSS 180
IRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPLEQSS
Sbjct: 121 IRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPLEQSS 180
Query: 181 LSLWAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFDASLEK 240
LSLWAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFDASLEK
Sbjct: 181 LSLWAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFDASLEK 240
Query: 241 PDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANAQ 300
PDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANAQ
Sbjct: 241 PDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANAQ 300
Query: 301 NYTTQDFEENNSPYTAEITQKLTALKPLEILKPEPFKDGFIVVQLISQIKDELQNFNEAK 360
NYTTQDFEENNSPYTAEITQKLTALKPLEILKPEPFKDGFIVVQLISQIKDELQNFNEAK
Sbjct: 301 NYTTQDFEENNSPYTAEITQKLTALKPLEILKPEPFKDGFIVVQLISQIKDELQNFNEAK 360
Query: 361 SALKTRLTQEKTLMALQTLAKEKLKDFKGKSVGYVSPNFGGTISELNQEESAKFINALFN 420
SALKTRLTQEKTLMALQTLAKEKLKDFKGKSVGYVSPNFGGTISELNQEESAKFINALFN
Sbjct: 361 SALKTRLTQEKTLMALQTLAKEKLKDFKGKSVGYVSPNFGGTISELNQEESAKFINALFN 420
Query: 421 RQEKKGFIAINNKVVLYQITEQNFNHSFSAEESQYMQRLVNNTKTDFFDKALIEELKKRY 480
RQEKKGFIAINNKVVLYQITEQNFNHSFSAEESQYMQRLVNNTKTDFFDKALIEELKKRY
Sbjct: 421 RQEKKGFIAINNKVVLYQITEQNFNHSFSAEESQYMQRLVNNTKTDFFDKALIEELKKRY 480
Query: 481 KIVKYIQ 487
KIVKYIQ
Sbjct: 481 KIVKYIQ 487
>ref|NP_223629.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71873 hypothetical protein jhp0911 - Helicobacter pylori (strain J99)
gb|AAD06486.1| (AE001520) putative [Helicobacter pylori J99]
Length = 487
Score = 923 bits (2385), Expect = 0.0
Identities = 467/487 (95%), Positives = 479/487 (97%)
Query: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 60
MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 60
Query: 61 RRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAKE 120
RRLKDAYAESIPDFKELT+DQIKAMHLEKSALDSLINQALLRN ALDLGLGATKQEVAKE
Sbjct: 61 RRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNFALDLGLGATKQEVAKE 120
Query: 121 IRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPLEQSS 180
IRKT+VFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKIS LFPKTTTPLEQSS
Sbjct: 121 IRKTNVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTPLEQSS 180
Query: 181 LSLWAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFDASLEK 240
LSLWAKLQDKLDILILNP+DVKISLNEEEMKKYYE+H+KDFKKPTSFKTRSLYFDASLEK
Sbjct: 181 LSLWAKLQDKLDILILNPNDVKISLNEEEMKKYYENHRKDFKKPTSFKTRSLYFDASLEK 240
Query: 241 PDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANAQ 300
DLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDL+MQKANEKALRSYIALKK NAQ
Sbjct: 241 TDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLNMQKANEKALRSYIALKKGNAQ 300
Query: 301 NYTTQDFEENNSPYTAEITQKLTALKPLEILKPEPFKDGFIVVQLISQIKDELQNFNEAK 360
NYTTQDFE+NNSPYTAEITQKLTALKPLE+LKPEPFKDGFIVVQL+SQIKDELQNF+EAK
Sbjct: 301 NYTTQDFEKNNSPYTAEITQKLTALKPLEVLKPEPFKDGFIVVQLVSQIKDELQNFDEAK 360
Query: 361 SALKTRLTQEKTLMALQTLAKEKLKDFKGKSVGYVSPNFGGTISELNQEESAKFINALFN 420
SALKTRLTQEKTLMALQTLAKEKLKDFKGKSVGYVSPNFGGTISELNQEESAKFIN LFN
Sbjct: 361 SALKTRLTQEKTLMALQTLAKEKLKDFKGKSVGYVSPNFGGTISELNQEESAKFINTLFN 420
Query: 421 RQEKKGFIAINNKVVLYQITEQNFNHSFSAEESQYMQRLVNNTKTDFFDKALIEELKKRY 480
RQEKKGF+ I NKVVLYQITEQNFNH FSAEE+QYMQRLVNNTKTDFFDKALIEELKKRY
Sbjct: 421 RQEKKGFVTIGNKVVLYQITEQNFNHPFSAEENQYMQRLVNNTKTDFFDKALIEELKKRY 480
Query: 481 KIVKYIQ 487
KIVKYIQ
Sbjct: 481 KIVKYIQ 487
>ref|NP_281866.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
pir||A81340 probable periplasmic protein Cj0694 [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB72968.1| (AL139076) putative periplasmic protein [Campylobacter jejuni]
Length = 496
Score = 254 bits (649), Expect = 2e-66
Identities = 158/498 (31%), Positives = 266/498 (52%), Gaps = 19/498 (3%)
Query: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQE 59
M+ WMQ+H+KYLVVTIW+STIAF+ AG +GWG Y F+L+ S S A VG KI E
Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYDFNLNRSSSVATVGNEKIGFSEFDTR 60
Query: 60 YRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119
YR++ Y + LT + + + ++ AL SL+ LL N A DLG+G + ++ +
Sbjct: 61 YRQILSYYNQI--SNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENQILQ 118
Query: 120 EIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPLEQ 178
++ T FQ G F++ +Y +L ++ PK +E + +I K++ +F + E
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLAPKDYETQLANEVITDKLNQIFNIPSKDEEL 178
Query: 179 SSLSLWAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFDASL 238
L+ +QD L I ++ I +NEE++KK + HK+D+K ++ + + S
Sbjct: 179 KMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHKEDYKTKKIYEISTYFLPVSN 238
Query: 239 EKPDLKELEEYYH--KNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKK 296
EK D KELE++Y+ +NK+ Y D GK+ DF+S + +V D ++ + A ++ LK
Sbjct: 239 EKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKN 298
Query: 297 ANAQNYTTQDFEENNSPYTAEITQKLTALKPLEILKPEPFKDGFIVVQLISQIKDELQNF 356
Q+ E++ Y ++ K K ++L+P P+ +G+I+V+L + F
Sbjct: 299 GKDNFQKDQNISESDVYYPIDLLNK---AKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTF 355
Query: 357 NEAKSALKTRLTQEKTLMALQTLAKEKLKDFKGKSVGYVSPNFGG---TISE--LNQEES 411
EA+ + E+ L+ AK L +FKG +G+VS + +S+ LN E
Sbjct: 356 EEAREEVLPMYLSEQARKNLEEKAKNSLVNFKGDDIGFVSRDSSRESVKVSDKILNDSEF 415
Query: 412 AKFINALFNRQEKKGFIAIN-NKVVLYQITEQNFNHSFSAEESQY---MQRLVNNTKTDF 467
A F+ +FN + ++ IN NK +LY+I +Q + + S + QY +++ + N K +
Sbjct: 416 AYFLMNVFNTDQNSSYVVINDNKAILYKINKQKLDMN-SDKFEQYKTMLEQNLQNLKANE 474
Query: 468 FDKALIEELKKRYKIVKY 485
+ L++ELKK Y I Y
Sbjct: 475 LKQELVDELKKIYPIKIY 492
>emb|CAA65154.1| (X95910) orf1 [Campylobacter jejuni]
Length = 281
Score = 115 bits (287), Expect = 2e-24
Identities = 80/278 (28%), Positives = 141/278 (49%), Gaps = 15/278 (5%)
Query: 219 KDFKKPTSFKTRSLYFDASLEKPDLKELEEYYHK--NKVSYLDKEGKLQDFKSVQEQVKH 276
K K ++ + + S EK D KELE++Y++ NK+ Y D GK+ DF+S + +V
Sbjct: 4 KKIIKLKKYEISTYFLPVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAK 63
Query: 277 DLSMQKANEKALRSYIALKKANAQNYTTQDFEENNSPYTAEITQKLTALKPLEILKPEPF 336
D ++ + A ++ LK Q+ E++ Y ++ K K ++L+P P+
Sbjct: 64 DYALMQLKNVANAKFLDLKNGKDNFQKDQNISESDVYYPIDLLNKA---KNGDVLRPAPY 120
Query: 337 KDGFIVVQLISQIKDELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKDFKGKSVGYVS 396
+G+I+V+L + F EA+ + E+ L+ AK L +FKG +G+VS
Sbjct: 121 NNGYIIVKLNKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKNSLVNFKGDDIGFVS 180
Query: 397 PNFGG---TISE--LNQEESAKFINALFNRQEKKGFIAIN-NKVVLYQITEQNFNHSFSA 450
+ +S+ LN E A F+ +FN + ++ IN NK +LY+I +Q + + S
Sbjct: 181 RDSSRESVKVSDKILNDSEFAYFLMNVFNTDQNSSYVVINDNKAILYKINKQKLDMN-SD 239
Query: 451 EESQY---MQRLVNNTKTDFFDKALIEELKKRYKIVKY 485
+ QY +++ + N K + + L++ELKK Y I Y
Sbjct: 240 KFEQYKTMLEQNLQNLKANELKQELVDELKKIYPIKIY 277
>ref|NP_406628.1| (NC_003143) peptidyl-prolyl cis-trans isomerase D [Yersinia pestis]
emb|CAC92388.1| (AJ414155) peptidyl-prolyl cis-trans isomerase D [Yersinia pestis]
Length = 628
Score = 100 bits (249), Expect = 4e-20
Identities = 99/393 (25%), Positives = 174/393 (44%), Gaps = 29/393 (7%)
Query: 12 LVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEYRRLKDAYAESI 71
L + + + ++FI G+ G Y +D AAKV IS+ +L Q + + + +
Sbjct: 14 LKIILALIMLSFILTGV---GSYLIGGSNDYAAKVNDQDISRAQLEQAMQSERGRLQQKL 70
Query: 72 PD-FKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAKEIRKTSVFQKD 130
+ F L ++ L + L LIN LL A LGL + ++V + IR+ FQ
Sbjct: 71 GEQFSVLAANEGYMQQLRQQVLGQLINNVLLDQYARKLGLTVSDEQVKESIRQIPDFQTG 130
Query: 131 GVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKT--TTPLEQSSLSLWAKLQ 188
FD Y ++ Q Y P+ F + + LI Q++ F T P+E ++S Q
Sbjct: 131 EHFDNNRYLALINQLGYTPEQFAQLQRQQLINQQLLKAFSDTGFVLPIEVQAMSALVLQQ 190
Query: 189 D--KLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFDASLEKPDLKEL 246
+L L L + + +EE++ YY+ +K +F P K + DA+ + ++
Sbjct: 191 RDVRLATLDLKALQAEQKVTDEELQAYYDQNKHNFIAPEQMKVSFIAMDAAAMQSNITVT 250
Query: 247 EE----YYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANAQNY 302
EE YY +N+ SY E + + +V+ ++ + + A + IA +K
Sbjct: 251 EEDIAAYYDQNRSSYTQPERRNYSVIQFKTEVEAKAALDELKKGADFAVIAKEK------ 304
Query: 303 TTQDFEENNSPYTAEITQKLT--ALKPLEILKPEPFKD------GFIVVQLISQIKDEL- 353
+T NN + + T +K + + D G+++V+L + IK EL
Sbjct: 305 STDIISRNNGGELGWLEPETTPDEVKAANLSEKGQLSDVIKSSVGYLIVRL-NDIKPELV 363
Query: 354 QNFNEAKSALKTRLTQEKTLMALQTLAKEKLKD 386
+ +E L +L QEK L A L ++K+ D
Sbjct: 364 KPLSEVHDELAKKLKQEKALDAYYAL-QQKVND 395
>ref|NP_231552.1| (NC_002505) peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae]
pir||E82141 peptidyl-prolyl cis-trans isomerse D VC1918 [imported] - Vibrio
cholerae (group O1 strain N16961)
gb|AAF95066.1| (AE004267) peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae]
Length = 619
Score = 90.1 bits (222), Expect = 5e-17
Identities = 76/288 (26%), Positives = 133/288 (45%), Gaps = 31/288 (10%)
Query: 14 VTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEYRRLKDAYAESIPD 73
+ + + ++FI AG+ G Y S +++AAKVG +IS+ + Q Y+ ++ + D
Sbjct: 16 IILGLIILSFIFAGV---GNYLISGGNNAAAKVGNAEISRGDFEQAYQNERNRMQAQLGD 72
Query: 74 -FKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAKEIRKTSVFQKDGV 132
F L D KS LD ++N LL A LGL + ++V + I + FQ GV
Sbjct: 73 YFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQLILEIPQFQSQGV 132
Query: 133 FDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPLEQSSLSLWAKLQDKL- 191
FD Y+ L+++ + P+ + E + + L+ ++ + + + SL+ LQD+L
Sbjct: 133 FDSTAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGS-----EFSLAGEVNLQDQLI 187
Query: 192 ----DI----LILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFDASLEKP-- 241
DI L L K++L++EE+ +YY+++ + F +P K + A K
Sbjct: 188 SQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVELSADGLKAQV 247
Query: 242 --DLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKA 287
D ++YY ++ Y E Q V H L +KA
Sbjct: 248 SVDDAAAQQYYQEHLDKYSTAE---------QRNVSHILIEGNDEQKA 286
>ref|NP_246918.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK04063.1| (AE006234) unknown [Pasteurella multocida]
Length = 626
Score = 88.6 bits (218), Expect = 2e-16
Identities = 79/295 (26%), Positives = 140/295 (46%), Gaps = 18/295 (6%)
Query: 21 IAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEYRRLKDAYAESI-PDFKELTK 79
+AF+ +G+ G Y F+ SA K+ +ISQ+ Q Y + + + F L+
Sbjct: 24 VAFVLSGITG---YVFTRVDTSAVKINGEEISQQTFYQRYESESERLRQQLGAQFAALSG 80
Query: 80 DQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAKEIRKTSVFQKDGVFDEELYK 139
L +S L++LINQ LLR A +L +G + + V +EI + FQ++G FD LY+
Sbjct: 81 SPEFVAGLRQSVLNNLINQELLRQYADELKIGISDERVKQEIVTSQFFQQEGKFDNALYQ 140
Query: 140 NILKQSHYRPKHFEESVERLLILQKISTLFPKT--TTPLEQSSLS--LWAKLQDKLDILI 195
+L+ + P + V L L+++ T ++ P +Q+ L+ + +L
Sbjct: 141 RMLQLNGLTPDAYANIVREGLRLEQLQTGLAESEFIVPAQQAQLTELFFQARTVRLAPFS 200
Query: 196 LNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFD-ASLEK----PDLKELEEYY 250
L+ K ++++EE+ YYE++K F P K + + A +EK D+ E+ +YY
Sbjct: 201 LDQVLEKQTISDEEVSAYYEANKGAFLVPELAKVQYMTLTRADVEKHIQVSDV-EIAQYY 259
Query: 251 HKNKVSYL----DKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANAQN 301
NK Y+ + +Q + + + AN L S +L K +A+N
Sbjct: 260 QDNKALYVSQGQQRLSHIQVATEAEAKEIYQALQDGANFAGLASARSLDKISAEN 314
>sp|P44092|PPID_HAEIN Peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
Length = 622
Score = 87.4 bits (215), Expect = 3e-16
Identities = 92/397 (23%), Positives = 176/397 (44%), Gaps = 20/397 (5%)
Query: 1 MIEWMQN--HRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQ 58
+IE M N + K + + ++F+ GM G Y FS + AAKV ISQ++
Sbjct: 2 LIEKMHNLTNSKISKFILGLIAVSFLVGGMSG---YLFSSNDTYAAKVNGEVISQQDFLN 58
Query: 59 EYRRLKDAYAESIPDFKELTKDQIKAMH-LEKSALDSLINQALLRNLALDLGLGATKQEV 117
Y + + A+ + D + + L ++ ++ +I+Q LLR +L LG + + +
Sbjct: 59 RYNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMI 118
Query: 118 AKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKT----T 173
+ I FQ G FD +Y+ IL+Q+H + + L L++I +
Sbjct: 119 KRAIVTDPNFQVKGKFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178
Query: 174 TPLEQSSLSLWAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLY 233
++ S+ + K +L L L K S++++E+K YYE+++K F +P K + +
Sbjct: 179 AQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238
Query: 234 FDA-----SLEKPDLKELEEYYHKNKVSYLDKEGKLQDFKSVQE-QVKHDLSMQKANEKA 287
A +L+ D+ E+ +YY NK ++ + F + Q+ +V ++ + AN
Sbjct: 239 LSADNISRNLQVTDV-EIAQYYQDNKAQFMTQHLAHIQFANEQDAKVAYEELQKGANFAD 297
Query: 288 LRSYIALKKANAQNYTTQDF-EENNSPYTAEITQKLTALKPLEILKPEPFKDGFIVVQLI 346
+ +L K + +N + EN P E AL+ + +P + +V +
Sbjct: 298 VAKAKSLDKISGENGGDLGWVNENELPKAFE--DAAAALQVGQYSQPINVDGNYHIVLVQ 355
Query: 347 SQIKDELQNFNEAKSALKTRLTQEKTLMALQTLAKEK 383
+ L+N + L + E +L+ A +K
Sbjct: 356 ERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDK 392
>ref|NP_286183.1| (NC_002655) putative protease maturation protein [Escherichia coli
O157:H7 EDL933]
ref|NP_308522.1| (NC_002695) putative protease maturation protein [Escherichia coli
O157:H7]
gb|AAG54791.1|AE005223_6 (AE005223) putative protease maturation protein [Escherichia coli
O157:H7 EDL933]
dbj|BAB33918.1| (AP002551) putative protease maturation protein [Escherichia coli
O157:H7]
Length = 623
Score = 81.3 bits (199), Expect = 2e-14
Identities = 87/397 (21%), Positives = 171/397 (42%), Gaps = 39/397 (9%)
Query: 12 LVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEYRRLKDAYAESI 71
L + I ++FI G+ G Y ++ AAKV +IS+ + + ++ + +
Sbjct: 14 LKIIFGIIIVSFILTGVSG---YLIGGGNNYAAKVNDQEISRGQFENAFNSERNRMQQQL 70
Query: 72 PD-FKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAKEIRKTSVFQKD 130
D + EL ++ L + L+ LI++ALL A +L LG + ++V + I T FQ D
Sbjct: 71 GDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQVD 130
Query: 131 GVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPLEQSSLSLWAKLQDK 190
G FD Y IL Q + +++ L Q++ T L+ + L A + +
Sbjct: 131 GKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQ 190
Query: 191 LDI----LILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFDASLEKPDLK-- 244
+ + +N K + E+E+ YYE +K +F P F+ + DA+ + +
Sbjct: 191 RVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATMQQPVSDA 250
Query: 245 ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANAQNYTT 304
+L+ YY ++ QD + ++ ++ + K ++A L K ++
Sbjct: 251 DLQSYYDQH-----------QDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGG--DFAA 297
Query: 305 QDFEENNSPYTAEITQKLTALKPLEI---LKPEPFKD------------GFIVVQLISQI 349
E++ +A + L+ I LK K+ GF++V+L
Sbjct: 298 LAKEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQ 357
Query: 350 KDELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKD 386
++++ +E + + ++ EK L A L ++K+ D
Sbjct: 358 PAKVKSLDEVRDDVAAKVKHEKALDAYYAL-QQKVSD 393
>ref|NP_414975.1| (NC_000913) putative protease maturation protein [Escherichia coli
K12]
sp|P77241|PPID_ECOLI Peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
pir||A64774 ybaU protein - Escherichia coli
dbj|BAA11645.1| (D82943) YbaU [Escherichia coli]
gb|AAB40197.1| (U82664) similar to H. influenzae HI1004 [Escherichia coli]
gb|AAC73544.1| (AE000150) putative protease maturation protein [Escherichia coli
K12]
Length = 623
Score = 80.9 bits (198), Expect = 3e-14
Identities = 86/397 (21%), Positives = 171/397 (42%), Gaps = 39/397 (9%)
Query: 12 LVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEYRRLKDAYAESI 71
L + I ++FI G+ G Y ++ AAKV +IS+ + + ++ + +
Sbjct: 14 LKIIFGIIIVSFILTGVSG---YLIGGGNNYAAKVNDQEISRGQFENAFNSERNRMQQQL 70
Query: 72 PD-FKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAKEIRKTSVFQKD 130
D + EL ++ L + L+ LI++ALL A +L LG + ++V + I T FQ D
Sbjct: 71 GDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQVD 130
Query: 131 GVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPLEQSSLSLWAKLQDK 190
G FD Y IL Q + +++ L Q++ T L+ + L A + +
Sbjct: 131 GKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQ 190
Query: 191 LDI----LILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFDASLEKPDLK-- 244
+ + +N K + E+E+ YYE +K +F P F+ + DA+ + +
Sbjct: 191 RVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATMQQPVSDA 250
Query: 245 ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANAQNYTT 304
+++ YY ++ QD + ++ ++ + K ++A L K ++
Sbjct: 251 DIQSYYDQH-----------QDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGG--DFAA 297
Query: 305 QDFEENNSPYTAEITQKLTALKPLEI---LKPEPFKD------------GFIVVQLISQI 349
E++ +A + L+ I LK K+ GF++V+L
Sbjct: 298 LAKEKSADIISARNGGDMGWLEDATIPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQ 357
Query: 350 KDELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKD 386
++++ +E + + ++ EK L A L ++K+ D
Sbjct: 358 PAKVKSLDEVRDDIAAKVKHEKALDAYYAL-QQKVSD 393
>ref|NP_213414.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
pir||B70353 conserved hypothetical protein aq_592 - Aquifex aeolicus
gb|AAC06821.1| (AE000697) hypothetical protein [Aquifex aeolicus]
Length = 437
Score = 80.5 bits (197), Expect = 4e-14
Identities = 98/491 (19%), Positives = 200/491 (39%), Gaps = 72/491 (14%)
Query: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEY 60
M +Q H++ V+ + +++++F+ + FS+ G ++ + E
Sbjct: 1 MFGLIQKHKRIAVIIVTLASLSFLF--------WMFSVSDVKQMLTGNPCVAT--VGDEC 50
Query: 61 RRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAKE 120
L++ Y + + +D+ + AL+SLI + +L A +LG + +EV +
Sbjct: 51 ITLRE-YRFELLKYSNFLQDERTEKLARRVALNSLITKEVLYLKAKELGWYVSDEEVVEV 109
Query: 121 IRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPK--TTTPLEQ 178
I+ F++ G F E Y+ L + P +EE V + L+ Q++ + P E
Sbjct: 110 IKNDENFKEKGKFSVEKYRETLNRFGLTPAEYEEIVRKSLMAQRVLNFLREGVYVLPDEL 169
Query: 179 SSLSLWAKLQDKLDILILNPSDVKISL--NEEEMKKYYESHKKDFKKPTSFKTRSLYFDA 236
+ L+ + + ++ PSDVK+ +EEE+K+YYE +K+ FK+ + + + +
Sbjct: 170 DIQKRFYSLRVEGKLYLIKPSDVKVDYEPSEEEIKEYYEKNKEKFKE----EEKEVVYVW 225
Query: 237 SLEKPDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKK 296
SL+ D ++++EYY K K
Sbjct: 226 SLK--DKEKVKEYYENLK----------------------------------------KG 243
Query: 297 ANAQNYTTQDFEENNSPYTAEITQKLTALKPLEILKPEPFKDGFIVVQLISQIKDELQNF 356
+ YT +F EN P E ++L +++++ + + ++ + +
Sbjct: 244 SIPSGYT--EFNENLPPKVKEAVKELNQENRIKVVR---VGENYYLLYYKGKENAGYKPL 298
Query: 357 NEAKSALKTRLTQEKTLMALQTLAKEKLKDFK-GKSVGYVSPNFGGT----ISELNQEES 411
E K +K L +K L+ A+E K+ K GK VG F I + E
Sbjct: 299 EEVKEEIKKELVAKKQREKLKEFAQEVFKNLKEGKEVGVKPLAFSSASLEEIQRILMVEQ 358
Query: 412 AKFINALFNRQEKKGFIAINNKVVLYQITEQNFNHSFSAEESQYMQRLVNNTKTDFFDKA 471
+N +F +++ G + + + F E+ + ++R + + K +
Sbjct: 359 KDLLNLVFGKEKVYGPYPSLAGYGILVVKNRKF-EELKPEQVKEIERELKDNKFNDLAGL 417
Query: 472 LIEELKKRYKI 482
+E+L K Y +
Sbjct: 418 FVEKLIKEYGV 428
>ref|NP_459448.1| (NC_003197) peptidyl prolyl isomerase [Salmonella typhimurium LT2]
gb|AAL19407.1| (AE008716) peptidyl prolyl isomerase [Salmonella typhimurium LT2]
Length = 623
Score = 77.4 bits (189), Expect = 4e-13
Identities = 84/399 (21%), Positives = 167/399 (41%), Gaps = 43/399 (10%)
Query: 12 LVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEYRRLKDAYAESI 71
L + I ++FI G+ G Y ++ AAKV +IS+ + + ++ + +
Sbjct: 14 LKIIFVIIIVSFILTGVSG---YLIGGSNNYAAKVNGQEISRAQFENAFNNERNRMQQQL 70
Query: 72 PD-FKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAKEIRKTSVFQKD 130
D + EL ++ L + L+ LI++ALL + +L LG + ++V + I T FQ D
Sbjct: 71 GDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQAIFATPAFQVD 130
Query: 131 GVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPLEQSSLSLWAKLQD- 189
G FD Y I+ Q + +++ L Q++ T L+ + L A +
Sbjct: 131 GKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVSQQ 190
Query: 190 ---KLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFDASLEKPDLK-- 244
+ ++ +N K + ++E+ YY+ +K F P F+ + DA+ + +
Sbjct: 191 RVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKLDAATMQAPVSDA 250
Query: 245 ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKAN-----A 299
+++ YY ++ D + E++++ + K + A AL K A
Sbjct: 251 DIQAYYDQH-----------VDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLA 299
Query: 300 QNYTTQDFEENNSPYTAEITQKLTALKPLEILKPEPFKD------------GFIVVQLIS 347
+ +T N + + T + LK K+ GF+V +L
Sbjct: 300 KEKSTDIISARNGGDMGWLEESATVPE----LKNAGLKEKGQISGVIKSSVGFLVARLDD 355
Query: 348 QIKDELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKD 386
+++ +E + + ++ QEK L A L ++K+ D
Sbjct: 356 IQPAKVKPLSEVRDDIAAKVKQEKALDAYYAL-QQKVSD 393
>ref|NP_455049.1| (NC_003198) peptidyl-prolyl cis-trans isomerase D [Salmonella
enterica subsp. enterica serovar Typhi]
emb|CAD08911.1| (AL627266) peptidyl-prolyl cis-trans isomerase D [Salmonella
enterica subsp. enterica serovar Typhi]
Length = 623
Score = 77.4 bits (189), Expect = 4e-13
Identities = 84/399 (21%), Positives = 167/399 (41%), Gaps = 43/399 (10%)
Query: 12 LVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEYRRLKDAYAESI 71
L + I ++FI G+ G Y ++ AAKV +IS+ + + ++ + +
Sbjct: 14 LKIIFVIIIVSFILTGVSG---YLIGGSNNYAAKVNGQEISRAQFENAFNNERNRMQQQL 70
Query: 72 PD-FKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAKEIRKTSVFQKD 130
D + EL ++ L + L+ LI++ALL + +L LG + ++V + I T FQ D
Sbjct: 71 GDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQAIFATPAFQVD 130
Query: 131 GVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPLEQSSLSLWAKLQD- 189
G FD Y I+ Q + +++ L Q++ T L+ + L A +
Sbjct: 131 GKFDNNRYNAIVNQMGMTADQYTQALRNQLTTQQLINGVAGTDFMLKGETDELAALVSQQ 190
Query: 190 ---KLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFDASLEKPDLK-- 244
+ ++ +N K + ++E+ YY+ +K F P F+ + DA+ + +
Sbjct: 191 RVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKLDAATMQAPVSDA 250
Query: 245 ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKAN-----A 299
+++ YY ++ D + E++++ + K + A AL K A
Sbjct: 251 DIQAYYDQH-----------VDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLA 299
Query: 300 QNYTTQDFEENNSPYTAEITQKLTALKPLEILKPEPFKD------------GFIVVQLIS 347
+ +T N + + T + LK K+ GF+V +L
Sbjct: 300 KEKSTDIISARNGGDMGWLEESATVPE----LKNAGLKEKGQISGVIKSSVGFLVARLDD 355
Query: 348 QIKDELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKD 386
+++ +E + + ++ QEK L A L ++K+ D
Sbjct: 356 IQPAKVKPLSEVRDDIAAKVKQEKALDAYYAL-QQKVSD 393
>ref|NP_439165.1| (NC_000907) peptidyl-prolyl cis-trans isomerse, putative
[Haemophilus influenzae Rd]
pir||B64018 hypothetical protein HI1004 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC22665.1| (U32781) peptidyl-prolyl cis-trans isomerse, putative [Haemophilus
influenzae Rd]
Length = 594
Score = 75.1 bits (183), Expect = 2e-12
Identities = 79/352 (22%), Positives = 155/352 (43%), Gaps = 15/352 (4%)
Query: 44 AKVGQIKISQEELAQEYRRLKDAYAESIPDFKELTKDQIKAMH-LEKSALDSLINQALLR 102
AKV ISQ++ Y + + A+ + D + + L ++ ++ +I+Q LLR
Sbjct: 16 AKVNGEVISQQDFLNRYNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLR 75
Query: 103 NLALDLGLGATKQEVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLIL 162
+L LG + + + + I FQ G FD +Y+ IL+Q+H + + L L
Sbjct: 76 QYVKELKLGVSDEMIKRAIVTDPNFQVKGKFDNAVYQRILQQNHLTSDGYASILRASLPL 135
Query: 163 QKISTLFPKT----TTPLEQSSLSLWAKLQDKLDILILNPSDVKISLNEEEMKKYYESHK 218
++I + ++ S+ + K +L L L K S++++E+K YYE+++
Sbjct: 136 EQIQNGVANSEFIVPAQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQ 195
Query: 219 KDFKKPTSFKTRSLYFDA-----SLEKPDLKELEEYYHKNKVSYLDKEGKLQDFKSVQE- 272
K F +P K + + A +L+ D+ E+ +YY NK ++ + F + Q+
Sbjct: 196 KSFVQPEQVKVQYIDLSADNISRNLQVTDV-EIAQYYQDNKAQFMTQHLAHIQFANEQDA 254
Query: 273 QVKHDLSMQKANEKALRSYIALKKANAQNYTTQDF-EENNSPYTAEITQKLTALKPLEIL 331
+V ++ + AN + +L K + +N + EN P E AL+ +
Sbjct: 255 KVAYEELQKGANFADVAKAKSLDKISGENGGDLGWVNENELPKAFE--DAAAALQVGQYS 312
Query: 332 KPEPFKDGFIVVQLISQIKDELQNFNEAKSALKTRLTQEKTLMALQTLAKEK 383
+P + +V + + L+N + L + E +L+ A +K
Sbjct: 313 QPINVDGNYHIVLVQERKAQSLENVKAQIADLVRKSLMESRYFSLEKQASDK 364
>ref|NP_519836.1| (NC_003295) PROBABLE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
emb|CAD15417.1| (AL646066) PROBABLE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
Length = 648
Score = 73.6 bits (179), Expect = 5e-12
Identities = 67/310 (21%), Positives = 135/310 (42%), Gaps = 26/310 (8%)
Query: 1 MIEWMQNHRKYLVVTIWISTI-AFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQE 59
M+++++ HR+ + + + I +F+ G+ G+ + F S AAKVG I+ EL
Sbjct: 1 MLDFVRTHRRLMFLVLLILVFPSFVFFGVQGYSR--FMDGSHDAAKVGDTVITTSELDTR 58
Query: 60 YRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119
R + + + + Q + + + LD +I Q ++ N A L +V +
Sbjct: 59 VREQTERLRQMLG--AQYDPRQFEGPQMRRDVLDGIIQQRVMVNEASRANLSVADSKVRE 116
Query: 120 EIRK----TSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKI-STLFPKTTT 174
I + + + DG FD + Y +L P+ F+ + L+LQ+I ++
Sbjct: 117 TIEQIPAVAQLRKPDGKFDTDAYIKLLAAQGMTPEQFDARLRSELVLQQIPQSIVSSAFV 176
Query: 175 PLEQSSLSLWAKLQDK-LDILILNPSD--VKISLNEEEMKKYYESHKKDFKKPTSFKTRS 231
P + A+ Q + + L+ P+D K++++++ ++ YY++H+++F K
Sbjct: 177 PKSLVDRLIEARDQQREVQALLFKPADYAAKVTVDDKAIQAYYDAHQQEFAVLEQVKAEY 236
Query: 232 LYFDASLEKPDL----KELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKA 287
+ F + ++L+EYY +N + +E Q + H L N K
Sbjct: 237 VVFSGEEMMKQIPVTPEQLKEYYDQNAARFKTEE---------QRRAAHILIKLPDNAKP 287
Query: 288 LRSYIALKKA 297
A K+A
Sbjct: 288 ADKDAAKKRA 297
>ref|NP_250496.1| (NC_002516) peptidyl-prolyl cis-trans isomerase D [Pseudomonas
aeruginosa]
pir||A83421 peptidyl-prolyl cis-trans isomerase D PA1805 [imported] -
Pseudomonas aeruginosa (strain PAO1)
gb|AAG05194.1|AE004606_8 (AE004606) peptidyl-prolyl cis-trans isomerase D [Pseudomonas
aeruginosa]
Length = 621
Score = 71.6 bits (174), Expect = 2e-11
Identities = 78/349 (22%), Positives = 144/349 (40%), Gaps = 22/349 (6%)
Query: 40 SDSAAKVGQIKISQEELAQEYRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQA 99
S+ AAKV IS E+ Q + + + K+ + L+++AL LI +
Sbjct: 40 SNVAAKVNGDDISLNEVQQAVDMQRRQLLQRLG--KDFDPSMLDDKLLKEAALKGLIERT 97
Query: 100 LLRNLALDLGLGATKQEVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERL 159
LL A D + Q + + I +T FQ DG F+ + + +++Q +Y F + + +
Sbjct: 98 LLLQAAKDDKFAFSDQALDQLILQTPEFQVDGKFNADRFDQVIRQMNYSRMQFRQMLGQE 157
Query: 160 LILQKISTLFPKT--TTPLEQSSLSLWAKLQDKLDILILNPSDVKISLNEEEMKKYYESH 217
+++ ++ T T E S + K L + K S++++E+K +YE H
Sbjct: 158 MLIGQLRAGLAGTGFVTDNELQSFARLEKQTRDFATLAIKADASKSSVSDDEVKAFYEGH 217
Query: 218 KKDFKKPTSFKT------RSLYFDASLEKPDLKELEEYYHKNKVSYLDKEGKLQDFKSVQ 271
K +F P +S +FD K + +LE Y K + ++ V
Sbjct: 218 KSEFMTPEQVVVEYVELKKSSFFDQVKVKQE--DLEALYQKEIANLSEQRDAAHILIEVN 275
Query: 272 EQVKHDLSMQKANEKALR-----SYIALKKANAQNY----TTQDF-EENNSPYTAEITQK 321
++V + + K +E R + AL K +Q+ T D Y +
Sbjct: 276 DKVGDEQAKAKIDEIKARLAKGEDFAALAKEFSQDIGSAATGGDLGYAGRGVYDPAFEEA 335
Query: 322 LTALKPLEILKPEPFKDGFIVVQLISQIKDELQNFNEAKSALKTRLTQE 370
L ALK E+ P G+ +++L+ E+ + K L+ L ++
Sbjct: 336 LYALKQGEVSAPVKTPYGYHLIKLLGVQAPEVPSLESLKPKLEDELKKQ 384
>ref|NP_660794.1| (NC_004061) peptidyl-prolyl cis-trans isomerase D [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
gb|AAM68005.1| (AE014122) peptidyl-prolyl cis-trans isomerase D [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
Length = 621
Score = 66.2 bits (160), Expect = 8e-10
Identities = 68/341 (19%), Positives = 142/341 (40%), Gaps = 35/341 (10%)
Query: 73 DFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAKEIRKTSVFQKDGV 132
DF+++ K++ L LIN LL + E+ K I +FQ++
Sbjct: 73 DFEKIKKNKKFKEETYNYILSQLINNILLEQYTKRMNFNIQDNEIKKIIFNIPIFQENNE 132
Query: 133 FDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPLEQSSLSLWAKLQD--- 189
F+++ Y N L + + + + L + +T L+ + L +
Sbjct: 133 FNKKKYLNYLSSKNLTHYEYVSLIRKKLNTTYLINAISETDFILDNEQKKIIKLLSEKRI 192
Query: 190 -KLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFDASLEKPDL--KEL 246
K I+ +NP + E+E+ Y++ HK +F P FK + + K +E+
Sbjct: 193 IKKAIIKINPIINNQKVTEKEINNYFDQHKNEFYTPEKFKISYIQLKPNKFKIQCSNEEI 252
Query: 247 EEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANAQNYTTQD 306
+ +Y KN Y S QE+ ++ + K +AL LKK ++++
Sbjct: 253 KNWYKKNIDKY-----------SNQERRQYSIIQTKTKNEALSILSELKK--GEDFSKIA 299
Query: 307 FEENNSPYTAE-------ITQ-------KLTALKPL-EILKPEPFKDGFIVVQLISQIKD 351
E++ P+++E IT+ K+ L+ + +I F + F++++L +
Sbjct: 300 KEKSIDPFSSEQGGNIGWITKNFVPNEIKIANLEKIDQISNIIKFNNNFLIIKLNKILPK 359
Query: 352 ELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKDFKGKSV 392
+ + +E ++ + +K+L + L K+K+ K++
Sbjct: 360 KYKKISEVSDLIENEIKYQKSLNTYKKL-KDKIAIIAKKNI 399
>ref|NP_636360.1| (NC_003902) peptidyl-prolyl cis-trans isomerase [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gb|AAM40284.1| (AE012196) peptidyl-prolyl cis-trans isomerase [Xanthomonas
campestris pv. campestris str. ATCC 33913]
Length = 656
Score = 62.8 bits (151), Expect = 9e-09
Identities = 75/344 (21%), Positives = 147/344 (41%), Gaps = 37/344 (10%)
Query: 81 QIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAKEIRKTSVFQKDGVFDEELYKN 140
Q ++ + LD L+++ ++R A D G+ V I FQ DG F + Y+
Sbjct: 98 QFESRENKLQVLDQLVDEQVVRLGAEDAGIVIGDATVRDYIANIPAFQIDGKFSPDQYRA 157
Query: 141 ILKQS--HYRPKHFE----ESVERLLILQKISTLFPKTTTPLEQSSLSLWAKLQDKLDIL 194
L Q P F+ +S+++ +I Q ++ T + E+ L+L + +D +
Sbjct: 158 ALAQGTPPRTPAQFDALVRDSLQQSVIPQAVAESGFATKSEFER-LLTLMGETRDVELAM 216
Query: 195 ILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFDASLEKP----DLKELEEYY 250
+ P+ +++ ++K++Y+ H +DF++P + + +A+ P D L + Y
Sbjct: 217 LPEPTADTAPVSDAQIKQWYDGHPQDFRQPETVTIEYVELNAATLPPATAADEATLRKRY 276
Query: 251 HKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQK-ANEKALR----------SYIALKKANA 299
+ K +++ + +L + D + QK A EKA + + AL KAN+
Sbjct: 277 EEEKARFVEPDQRLA--SHILISAGSDAAAQKAAEEKAAKLAAEAKQPGADFAALAKANS 334
Query: 300 QNYTTQDFEENNS-----PYTAEITQKLTALKPLEILKPEPFKDGFIVVQLISQIKDELQ 354
Q+ ++D + S L A+K +++ P + G+ V+QL + +
Sbjct: 335 QDPGSKDAGGDLSWVEKGTMVKPFEDALFAMKAGDVVGPIKTEFGYHVIQLREVKGGQGK 394
Query: 355 NFNEAKSALKTRLTQEKTLMALQTLAKEKLKDFKGKSVGYVSPN 398
+F + + L L+ A + D GK V V N
Sbjct: 395 SFEQVRDQLAAE--------QLKADADKAFADLSGKLVDQVYKN 430
>ref|NP_641424.1| (NC_003919) peptidyl-prolyl cis-trans isomerase [Xanthomonas
axonopodis pv. citri str. 306]
gb|AAM35960.1| (AE011737) peptidyl-prolyl cis-trans isomerase [Xanthomonas
axonopodis pv. citri str. 306]
Length = 656
Score = 62.8 bits (151), Expect = 9e-09
Identities = 75/333 (22%), Positives = 141/333 (41%), Gaps = 37/333 (11%)
Query: 92 LDSLINQALLRNLALDLGLGATKQEVAKEIRKTSVFQKDGVFDEELYKNILKQS--HYRP 149
LD L+++ ++R A D G+ V I FQ DG F + Y+ L Q P
Sbjct: 109 LDQLVDEQVVRLGAEDAGIVIGDATVRDYIANIPAFQVDGKFSPDQYRAALAQGTPPRTP 168
Query: 150 KHFE----ESVERLLILQKISTLFPKTTTPLEQSSLSLWAKLQDKLDILILNPSDVKISL 205
F+ +S+++ +I Q ++ TT+ E+ L L + +D ++ P+ +
Sbjct: 169 AQFDALVRDSLQQSVIPQAVAESGFATTSEFER-LLKLMGETRDVELAMLPPPAADAAPV 227
Query: 206 NEEEMKKYYESHKKDFKKPTSFKTRSLYFDASLEKP----DLKELEEYYHKNKVSYLDKE 261
++ ++K++Y+ H +DF++P + + +A+ P D L + Y K +++ E
Sbjct: 228 SDAQIKQWYDGHTQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPE 287
Query: 262 GKLQDFKSVQEQVKHDLSMQKANE-KALR----------SYIALKKANAQNYTTQDFEEN 310
+L + D + QKA E KA + + AL KAN+Q+ ++D +
Sbjct: 288 QRLASHILISAGT--DAAAQKAAEAKAAKLAAEAKQTGTDFAALAKANSQDPGSKDAGGD 345
Query: 311 -----NSPYTAEITQKLTALKPLEILKPEPFKDGFIVVQLISQIKDELQNFNEAKSALKT 365
L ++K E++ P + G+ V+QL + ++F + + L
Sbjct: 346 LGWVEKGTMVKPFEDALFSMKAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAA 405
Query: 366 RLTQEKTLMALQTLAKEKLKDFKGKSVGYVSPN 398
L+ A + D GK V V N
Sbjct: 406 E--------QLKADADKAFADVSGKLVDQVYKN 430
>ref|NP_102382.1| (NC_002678) peptidyl-prolyl cis-trans isomerse D [Mesorhizobium
loti]
dbj|BAB48168.1| (AP002995) peptidyl-prolyl cis-trans isomerse D [Mesorhizobium
loti]
Length = 630
Score = 62.4 bits (150), Expect = 1e-08
Identities = 99/467 (21%), Positives = 196/467 (41%), Gaps = 70/467 (14%)
Query: 21 IAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEYRRLKDAYAESIPDFKELTKD 80
++F A G+ G F+ DS G K+S E Y R ++ + LT +
Sbjct: 23 VSFAAWGISGRLMGGFA-GHDSVIIAGGTKVSINEYRLAYDRQLAVMSQQFG--QRLTHE 79
Query: 81 QIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAKEIRKTSVFQ-KDGVFDEELYK 139
Q KA+ ++ L L++ A+L A LGLG +K +A+ R+ F+ G FD ++
Sbjct: 80 QAKALGIDNQVLAQLVSGAVLDEQARKLGLGLSKDRLAELTREDPAFKGPGGEFDRRTFE 139
Query: 140 NILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPLEQ--SSLSLWAKLQDKLDILILN 197
+L+Q RP+ + ++ ++ + Q+I + +++L+ +D L+L
Sbjct: 140 YMLRQVGMRPEDYLKNRAQVAVRQQIVEAVSDGLKAPDAFFKAVALYRGEDRTVDYLLLP 199
Query: 198 PSDVK--ISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFDASLEKPDL--------KELE 247
V+ + ++ ++ Y+E++KK + P K + LE D+ +++
Sbjct: 200 KKLVEPIEAPSDSVLQAYFEANKKTYAAPEYRK----FSYVRLEPVDIMDPTAVTEQQVS 255
Query: 248 EYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKK-ANAQNYTTQD 306
+ Y+KNK Y E +++++ V KA +L++ +K A+ T D
Sbjct: 256 DDYNKNKTRYTTPE-----MRTIEQLVFKTPDAAKAALDSLKAGATFEKLVTAEGKTPAD 310
Query: 307 FEEN-------------------NSPYTAEITQ--------KLTALKPLEILKPEPFKDG 339
N+ +++ Q ++T +KP E++KP
Sbjct: 311 TLLGTLAKDKIADKAVADAAFALNANEVSQVVQGAFGPVLLRVTEIKP-EVVKP------ 363
Query: 340 FIVVQLISQIKDELQNFNEAKSALKTRLTQEKTLMALQTL----AKEKLKDFKGKSVGYV 395
+ ++ QI+ +L ++ L E T + +L AK KLKD ++
Sbjct: 364 --LAEVSDQIRKDLALGEASRILLDVHDNYEDTRASGSSLADAAAKLKLKDVTIDAIDRS 421
Query: 396 SPNFGGTISELNQEESAKFINALFN---RQEKKGFIAINNKVVLYQI 439
G+I + + ES I A+F+ + E + +N + Y++
Sbjct: 422 GLRPDGSIVK-DLPESPALIKAVFDAEPKTENEALTTADNGFIFYEV 467
>pir||T46851 conserved hypothetical protein ybaU [imported] - Rhodobacter
sphaeroides
gb|AAD09115.1| (AF108766) YbaU [Rhodobacter sphaeroides]
Length = 621
Score = 60.1 bits (144), Expect = 6e-08
Identities = 64/280 (22%), Positives = 119/280 (41%), Gaps = 27/280 (9%)
Query: 2 IEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKVGQIKISQEELAQEYR 61
IE + +K + W + +A G+ G+G +F + VG I+ A+ +
Sbjct: 7 IEHHKPKKKGTQLVFW-GLVGLMAVGLGGFGVTNFGGGLSTVGSVGDRDITTGAYARALQ 65
Query: 62 RLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAKEI 121
+ A I + +T + KA L++ L+ +A L N A +GL VA+EI
Sbjct: 66 QEMRALGAQIN--QPVTMEMAKAFGLDQQVRRRLVTEAALSNEADRIGLSVGDARVAREI 123
Query: 122 RKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFE----ESVERLLILQKISTLFPKTTTPL 176
T F G FD E Y+ +L+Q++ FE E + R L+ + F P
Sbjct: 124 TGTDAFHGPSGQFDRETYRLVLRQNNLSEGEFETGLREDMARSLLQGAVGGGF---IAPA 180
Query: 177 EQSSLSLWAKLQDKLDILILNPSDVKISL-----NEEEMKKYYESHKKDFKKPTSFKTRS 231
+ + +L A + ++ +L ++ ++ + E++ +YE+H DF P +T+
Sbjct: 181 QMVN-TLHAYIAERRSFGLLRVTEANLAKPLAAPTDAELQAWYEAHPADFTAP---ETKR 236
Query: 232 LYFDASLEK-------PDLKELEEYYHKNKVSYLDKEGKL 264
+ + A L + D L Y + ++ E +L
Sbjct: 237 ITYAALLPQDVAATLPADEAALRRLYDERHAEFVQPERRL 276
>emb|CAA05330.1| (AJ002316) putative peptidyl-prolyl cis-trans isomerase
[Acinetobacter sp. ADP1]
Length = 622
Score = 59.7 bits (143), Expect = 8e-08
Identities = 81/402 (20%), Positives = 169/402 (41%), Gaps = 44/402 (10%)
Query: 5 MQNHRKYLVVTIWISTIAFIA----AGMIGW-GQYSFSLDSDSAAKVGQIKISQEELAQE 59
M++ RK V+ W+ + I ++G G + +D A V IS+++L
Sbjct: 1 MESFRK--VIKGWLGKVLLILFLTPLALVGIEGYFGGGNKADVAKTVNGQDISKKDLENL 58
Query: 60 YRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAK 119
+ KD Y + L + ++E++AL++LI ++LL A LG+ + ++ K
Sbjct: 59 TKTYKDQYLSLAKGDETL----LNQSYIEENALNTLIARSLLLQQAEKLGISLSDAQIEK 114
Query: 120 EIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKT--TTPLE 177
+ + FQ++G F E LY N L+ + S+ + L+ +++ T + +
Sbjct: 115 MLAQQPSFQENGKFSETLYSNYLRSVGMTSQALIASLRQDHALKMLTSSVTDTALVSKFD 174
Query: 178 QSSLSLWAKLQDKLDILILNPSDVK--ISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFD 235
+++ Q + + + D K I++ +E+ YY HK FK+ S +
Sbjct: 175 LHQIAVLQTEQRTIHLASIKLDDYKKNINVTNQEIADYYNKHKNKFKQVASVDVDYIVVS 234
Query: 236 -ASLEKPDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDL------SMQKANEKAL 288
A + E + ++++ + K + VKH L S +A + A
Sbjct: 235 PAQVSSAPAAVTEAELQQAYNAFVETQK-----KDAKRLVKHILITADGRSDAEAQKIAN 289
Query: 289 RSYIALKKAN-----AQNYTTQDFEENNSP---------YTAEITQKLTALKPLEILKPE 334
Y ++ A+ Y+ +NN ++ + Q + +LK ++ KP
Sbjct: 290 DVYAKIQAGTHFSEAAKQYSDDTSSKNNGGVVDAYQPGIFSKDFDQAVESLKNGQVSKPV 349
Query: 335 PFKDGFIVVQL-ISQIKDELQNFNEAKSALKTRLTQEKTLMA 375
+ G+ ++++ +Q+K L + K+ L + + K+ A
Sbjct: 350 KTQYGYHIIEVETAQVK--LPSLEAEKARLTAEIQKSKSANA 389
>ref|NP_349811.1| (NC_003030) Parvulin-like peptidyl-prolyl isomerase, PRSA
B.subtilis ortholog [Clostridium acetobutylicum]
gb|AAK81151.1|AE007817_5 (AE007817) Parvulin-like peptidyl-prolyl isomerase, PRSA B.subtilis
ortholog [Clostridium acetobutylicum]
Length = 353
Score = 55.1 bits (131), Expect = 2e-06
Identities = 74/376 (19%), Positives = 138/376 (36%), Gaps = 65/376 (17%)
Query: 10 KYLVVTIWISTIAFIAAGMIGWGQYSFSLDSDSAAKV-GQIKISQEELAQEYRRLKDAYA 68
K + + + F A G + +++S A + G I++ E+ + + +
Sbjct: 25 KQIATALLVGMFTFSAVGCSMVEKRPEAINSKVVATIYGNQTITRGEIDKLAKGTVEQLK 84
Query: 69 ESIPDFKELTKDQIKAMHLEKSA-LDSLINQALLRNLALDLGLGATKQEVAKEIRKTSVF 127
D E ++ + A+ +K L SLI+Q + A D + TK E+ +
Sbjct: 85 SQYGDSYEKNEEAVAALKKQKEQILTSLIDQKIFLKKAKDQKITLTKDEIKTNVDDVYAQ 144
Query: 128 QKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPLEQSSLSLWAKL 187
+ E +K+ L Q Y F++ ++ I K+ K
Sbjct: 145 YQQEFKTESEFKSQLSQYGYTVAEFKDQLKNRAISNKLIQQVVK---------------- 188
Query: 188 QDKLDILILNPSDVKISLNEEEMKKYYESHKKDF-KKPTSFKTRSLYFDASLEKPDLKEL 246
DVK+S ++E KKYY+SHK + + P + + E +K
Sbjct: 189 ------------DVKVS--DDEAKKYYDSHKNSYTQSPNTVHLAHILVKTEKEAKAVK-- 232
Query: 247 EEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANAQNYTTQD 306
+ +DK +DF +V +QV D S +K + D
Sbjct: 233 ---------ARIDKG---EDFATVAKQVSTDGSKEKGGDLG------------------D 262
Query: 307 FEENNSPYTAEITQKLTALKPLEILKPEPFKDGFIVVQLISQIKDELQNFNEAKSALKTR 366
+EN+S Y L ++ P + G+ V++ I + + +++FN K +K
Sbjct: 263 IQENDSNYDKTFMAAALKLNDNQVSAPVHTQFGWHVIKCIKKTEYPVKDFNSVKDDIKQT 322
Query: 367 LTQEKTLMALQTLAKE 382
+ K Q K+
Sbjct: 323 VLSTKQKSVYQKTLKK 338
>ref|NP_539762.1| (NC_003317) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE D [Brucella
melitensis]
gb|AAL52026.1| (AE009525) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE D [Brucella
melitensis]
Length = 628
Score = 54.7 bits (130), Expect = 2e-06
Identities = 58/256 (22%), Positives = 117/256 (45%), Gaps = 24/256 (9%)
Query: 75 KELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAKEIRKTSVFQK-DGVF 133
+ LT++Q KA+ +E L L +L A ++ LG ++ +A+ + F G F
Sbjct: 73 QRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTAEDPAFHDAGGNF 132
Query: 134 DEELYKNILKQSHYRPKHFEESVERLLILQKI------STLFPKTTTPLEQSSLSLW--- 184
+ + +L+QS R + + E+ ++ Q+I P T +L+L+
Sbjct: 133 NRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTML----KALALYQGE 188
Query: 185 AKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFDAS-LEKP-- 241
++ D +D+ +D + +E+ +K Y+E+HK+D+K P K + + S + P
Sbjct: 189 SRSADYIDVPA-EKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPSDIADPAA 247
Query: 242 -DLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANAQ 300
E+ EYY KNK + + + + + + + + QK +A S++ + K +
Sbjct: 248 VTQDEISEYYEKNKARFSTPKTRTIEQLNFADDAAAEAAHQKI--EAGTSFLDIGKEQGK 305
Query: 301 ---NYTTQDFEENNSP 313
+ T FE++ P
Sbjct: 306 TESDLTLGTFEKSGIP 321
>pir||A64505 P115 homolog - Methanococcus jannaschii
Length = 1169
Score = 51.2 bits (121), Expect = 3e-05
Identities = 58/259 (22%), Positives = 119/259 (45%), Gaps = 25/259 (9%)
Query: 44 AKVGQIKISQEELAQEYRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQAL-LR 102
+K+ ++ +E++ E + + E++ E+ + ++K + EK+ L + I++ L L
Sbjct: 774 SKINELIERREKIINELKEYESD--ENLKRMNEI-EGELKILEKEKAKLKNEIDKGLTLV 830
Query: 103 NLALDLGLGATKQEVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLIL 162
L + ++V++ I K + +K+ F +E + L + K +EE + L L
Sbjct: 831 KEILIPKIEELNKKVSELINKKVILEKNISFYKESIEKNLSILEEKRKRYEELAKNLKEL 890
Query: 163 QKISTLFPKTTTPLEQSSLSLWAKLQD---KLDILILNPSDVKISLNEEEMKKYYESHKK 219
+ K LE+ + K++D +++ L++ + + L EEE +K Y K
Sbjct: 891 TEKKEQLEKEIETLERERREILRKVRDIENRINELMVEKAKYESKLEEEE-RKLYLCEKV 949
Query: 220 DFKKPTSFKTRSLYFDASLEKPDLKELEEYYH--KNKVSYLDKEG--KLQDFKSVQEQVK 275
D K LEK D++ELE Y +N++ L+ ++D+ V E+ K
Sbjct: 950 DVSK-------------ELEKKDIEELEIYIGELENEIKSLEPVNMRAIEDYNYVAERYK 996
Query: 276 HDLSMQKANEKALRSYIAL 294
+ +K E+ + Y+ L
Sbjct: 997 ELIEKRKEYERDEKKYLQL 1015
>ref|NP_248653.1| (NC_000909) chromosome segretation protein (smc1) [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
sp|Q59037|SMC_METJA Chromosome partition protein smc homolog
gb|AAB99663.1| (U67604) chromosome segretation protein (smc1) [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
Length = 1169
Score = 51.2 bits (121), Expect = 3e-05
Identities = 58/259 (22%), Positives = 119/259 (45%), Gaps = 25/259 (9%)
Query: 44 AKVGQIKISQEELAQEYRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQAL-LR 102
+K+ ++ +E++ E + + E++ E+ + ++K + EK+ L + I++ L L
Sbjct: 774 SKINELIERREKIINELKEYESD--ENLKRMNEI-EGELKILEKEKAKLKNEIDKGLTLV 830
Query: 103 NLALDLGLGATKQEVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLIL 162
L + ++V++ I K + +K+ F +E + L + K +EE + L L
Sbjct: 831 KEILIPKIEELNKKVSELINKKVILEKNISFYKESIEKNLSILEEKRKRYEELAKNLKEL 890
Query: 163 QKISTLFPKTTTPLEQSSLSLWAKLQD---KLDILILNPSDVKISLNEEEMKKYYESHKK 219
+ K LE+ + K++D +++ L++ + + L EEE +K Y K
Sbjct: 891 TEKKEQLEKEIETLERERREILRKVRDIENRINELMVEKAKYESKLEEEE-RKLYLCEKV 949
Query: 220 DFKKPTSFKTRSLYFDASLEKPDLKELEEYYH--KNKVSYLDKEG--KLQDFKSVQEQVK 275
D K LEK D++ELE Y +N++ L+ ++D+ V E+ K
Sbjct: 950 DVSK-------------ELEKKDIEELEIYIGELENEIKSLEPVNMRAIEDYNYVAERYK 996
Query: 276 HDLSMQKANEKALRSYIAL 294
+ +K E+ + Y+ L
Sbjct: 997 ELIEKRKEYERDEKKYLQL 1015
>ref|NP_240289.1| (NC_002528) peptidyl-prolyl cis-trans isomerase D [Buchnera sp.
APS]
sp|P57550|PPID_BUCAI Peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
dbj|BAB13175.1| (AP001119) peptidyl-prolyl cis-trans isomerase D [Buchnera sp. APS]
Length = 623
Score = 50.4 bits (119), Expect = 5e-05
Identities = 65/312 (20%), Positives = 130/312 (40%), Gaps = 13/312 (4%)
Query: 92 LDSLINQALLRNLALDLG-LGATKQEVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPK 150
L LIN LL A ++ L + K I + +FQK+ F +E Y N L +
Sbjct: 92 LSQLINNVLLEQYAKNMNYLEVNDNTIKKIIYNSPIFQKNNKFSKERYLNYLTSINSTNH 151
Query: 151 HFEESVERLLILQKISTLFPKTTTPLEQSSLSLWAKLQDKL----DILILNPSDVKISLN 206
+ +++ + + + K+ L++ ++ L K I+ ++PS K ++
Sbjct: 152 EYINIIKKKINTENLIHTISKSNFILKKEEKNIIKLLSQKRIIKKAIVKIDPSIYKKNIT 211
Query: 207 EEEMKKYYESHKKDFKKPTSFKTR--SLYFDASLEKPDLKELEEYYHKNKVSYLDKEGKL 264
+E + Y++ ++ +F P FK L D + KE+ ++Y +N Y KE +
Sbjct: 212 NQEAQIYFKKNQDNFYIPEKFKINFVELKTDNFKIHCENKEIYDWYIRNITQYSTKEKRR 271
Query: 265 QDFKSVQ-EQVKHDLSMQKANEKALRSYIALKKANAQNYTTQDFEEN--NSPYTAEITQK 321
V+ +Q + + N S IA +++ + +D + + + +
Sbjct: 272 YSIIQVKNKQQAISILSRLHNTPEDFSKIAQEQSTDPISSKKDGDIGWISIDLIPDEIKH 331
Query: 322 LTALKPLEILKPEPFKDGFIVVQLISQIKDELQNFNEAKSALKTRLTQEKTL---MALQT 378
K +I PF + F++V+L + E ++K ++ Q+K+L L+
Sbjct: 332 ANLNKKNQISDVIPFHNEFLIVKLNETQIGTQKKIYEVFDSIKKQIKQKKSLDLYNELKN 391
Query: 379 LAKEKLKDFKGK 390
LK+ GK
Sbjct: 392 KISNNLKNDPGK 403
>ref|NP_274262.1| (NC_003112) peptidyl-prolyl cis-trans isomerase-related protein
[Neisseria meningitidis MC58]
pir||C81105 peptidyl-prolyl cis-trans isomerase-related protein NMB1238
[imported] - Neisseria meningitidis (group B strain
MD58)
gb|AAF41619.1| (AE002472) peptidyl-prolyl cis-trans isomerase-related protein
[Neisseria meningitidis MC58]
Length = 512
Score = 49.3 bits (116), Expect = 1e-04
Identities = 59/272 (21%), Positives = 111/272 (40%), Gaps = 25/272 (9%)
Query: 21 IAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQEYRRLKDAYAESIPDFKELTK 79
+ IA +G+G + S +D +VG KIS + +A D ++
Sbjct: 16 LGLIALTFVGFGVSTVSHPGADYIVQVGDEKISDHSI-------NNAIQNEQADGGGPSR 68
Query: 80 DQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAKEIRKTSVFQK-DGVFDEELY 138
D + SL+ +A L+ A +G+ + +++ + I F +G FD L
Sbjct: 69 DAV---------FQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFDHALL 119
Query: 139 KNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPLEQSSLSLWAKLQDKLDIL--IL 196
L Q H F E + LQ + L + + L Q I
Sbjct: 120 NRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIRSHTF 179
Query: 197 NPSD--VKISLNEEEMKKYYESHKKDFKKPTSFKTR--SLYFDASLEKPDLKELE-EYYH 251
NP + ++ ++E +++K+Y ++KKD+ P + K +L +K + E E +
Sbjct: 180 NPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEVKNAF 239
Query: 252 KNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKA 283
+ +V+ L F+ + V+++L M+KA
Sbjct: 240 EERVARLPANEAKPSFEQEKAAVENELKMKKA 271
>ref|NP_284141.1| (NC_003116) putative peptidyl-prolyl cis-trans isomerase [Neisseria
meningitidis Z2491]
pir||H81909 probable peptidylprolyl isomerase (EC 5.2.1.8) NMA1407 [imported] -
Neisseria meningitidis (group A strain Z2491)
emb|CAB84647.1| (AL162755) putative peptidyl-prolyl cis-trans isomerase [Neisseria
meningitidis Z2491]
Length = 512
Score = 49.3 bits (116), Expect = 1e-04
Identities = 59/272 (21%), Positives = 111/272 (40%), Gaps = 25/272 (9%)
Query: 21 IAFIAAGMIGWGQYSFSLD-SDSAAKVGQIKISQEELAQEYRRLKDAYAESIPDFKELTK 79
+ IA +G+G + S +D +VG KIS + +A D ++
Sbjct: 16 LGLIALTFVGFGVSTVSHPGADYIVQVGDEKISDHSI-------NNAIQNEQADGGGPSR 68
Query: 80 DQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAKEIRKTSVFQK-DGVFDEELY 138
D + SL+ +A L+ A +G+ + +++ + I F +G FD L
Sbjct: 69 DAV---------FQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFHDANGKFDHALL 119
Query: 139 KNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPLEQSSLSLWAKLQDKLDIL--IL 196
L Q H F E + LQ + L + + L Q I
Sbjct: 120 NRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLTQVNRTIRSHTF 179
Query: 197 NPSD--VKISLNEEEMKKYYESHKKDFKKPTSFKTR--SLYFDASLEKPDLKELE-EYYH 251
NP + ++ ++E +++K+Y ++KKD+ P + K +L +K + E E +
Sbjct: 180 NPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEVKNAF 239
Query: 252 KNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKA 283
+ +V+ L F+ + V+++L M+KA
Sbjct: 240 EERVARLPANEAKPSFEQEKAAVENELKMKKA 271
>ref|NP_603419.1| (NC_003454) Exonuclease SBCC [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL94718.1| (AE010564) Exonuclease SBCC [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 921
Score = 48.9 bits (115), Expect = 1e-04
Identities = 76/385 (19%), Positives = 163/385 (41%), Gaps = 57/385 (14%)
Query: 115 QEVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTT 174
+E K++ K F K+ + D+E N LK+ K+ ++ + + ++ K
Sbjct: 181 KEKIKDLDKEITFLKENMEDKEQITNFLKEEKELEKNLQDRFKNINVVSKNL-------- 232
Query: 175 PLEQSSLSLWAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYF 234
++ + + + +L+ L+ N D E ++KKY K++ + K +
Sbjct: 233 ---ENEIKDYETTEIELNNLVKNIKD-----EENKIKKYLNILKENIIEAKQAKKSKII- 283
Query: 235 DASLEKPDLKELEEYYHKNKVSYLDKEGKLQDFK----SVQEQVKHDLSMQKANEKALRS 290
+KE E+ Y + YL+ E +L+D + ++ E+ K ++ Q EK
Sbjct: 284 --------VKETEKSY----LEYLEIENRLKDLRENLDNLLEEQKLNIQYQNNIEK---- 327
Query: 291 YIALKKANAQNYTTQDFEENNSPYTAEITQKLTALKPLEILKPEPFKDGFIVVQLISQIK 350
+ L N +N + EEN S + + + + L+I + + + L+ ++
Sbjct: 328 -LELSNKNLKN-DIINLEENISKNSEKKENLESEISNLKIKEEDLDLKLKKYISLLDEL- 384
Query: 351 DELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKDFKGKSVGYVS---PNFGGTISELN 407
++L+NF + K K + T E ++ + ++K+ L FK ++ + NF EL
Sbjct: 385 EKLENFKDKKLEDKLKKTTEIDILKKELISKKDL--FKTINIEIIEEKLSNFQELEKELK 442
Query: 408 QEESAKFINALFNRQEKKGFIAINNKVVLY----------QITEQNFNH--SFSAEESQY 455
E K I + + KK +++K+ + + E F+ S E+ +
Sbjct: 443 LLEEQKIIFEIEIKTLKKSSKELSDKICPFLNEKCQNLEDKEAEDYFSSKISIKKEDLEN 502
Query: 456 MQRLVNNTKTDFFDKALIEELKKRY 480
+++ + +K + E+ KK+Y
Sbjct: 503 LKKNIKEKTQILVEKVVFEDKKKQY 527
>gb|EAA10144.1| (AAAB01008944) agCP15288 [Anopheles gambiae str. PEST]
Length = 1842
Score = 48.9 bits (115), Expect = 1e-04
Identities = 93/417 (22%), Positives = 179/417 (42%), Gaps = 48/417 (11%)
Query: 53 QEELAQEYRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLA-LDLGLG 111
Q E+ + + K A A S D K+LT D I+ + EK L+ + + + + + L + L
Sbjct: 836 QAEIKKLQTKAKPAGATSAADTKKLT-DSIEQLEKEKQELEGRLKRIVQESTSQLPMRLA 894
Query: 112 ATKQEVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLI-LQKISTLFP 170
+ ++ +++ + + + +EL + K E+ +RL L +
Sbjct: 895 KSPNDMHTKLQLRKMVEDSELEIDELRALVGKAGAMNIATLEKEKKRLEAELAETKQQQE 954
Query: 171 KTTTPLEQSSLSLWAKLQDKLDILILNPSDVKISLNEEEMKKYYESHK----KDFKKPTS 226
K TT L + KL N + + E+E +K + K K + T+
Sbjct: 955 KLTTELSTLKKETLEQQTSKL-----NEAQRTVERLEDENRKQNDKIKTLEDKITRVNTT 1009
Query: 227 FKTRS-------LYFDASLEKP-----DLKELEEYYHK--NKVSYLDKEGKLQDFKSVQE 272
KT + A EK DL+++ + K N++S L+KE LQ K E
Sbjct: 1010 MKTAESSKSLLEIQLKAEKEKHTGTERDLEKVRKEKTKLDNRISDLEKE--LQLSKKNAE 1067
Query: 273 QVKHDLSMQKANEKALRSYIALKKANAQNYTT-QDFEENNSPYTAEITQKLTALKPLEIL 331
+K L + A AL+S A ++++ QD ++ N T EI Q+ + L +
Sbjct: 1068 LIKESLEREMA---ALKSKSATGAEDSESSKILQDLKKQNEELTTEIHQQSRKFEEL-LQ 1123
Query: 332 KPEPFKDGFIVVQL-ISQIKDELQNFNEAKS------ALKTRLTQEKTLMALQTLAKEKL 384
K E ++ +V Q ++ +++LQ ++ K+ A++TRL +E T M+ + + +
Sbjct: 1124 KHETMEEEHLVTQAQLAAEREKLQELDKLKNKLLQAEAIETRLVKENTNMSRRLVEVQ-- 1181
Query: 385 KDFKGKSVGYVSPNFGGTISELNQEESAKFINALFNRQEKKGFIAINNKVVLYQITE 441
K + N + + E++ + AL ++Q +A N++ YQ+ +
Sbjct: 1182 -----KKLTAAETNNDSRYASIELEKN-RMKTALEDKQHDYEKLAKENEMNAYQVNQ 1232
>gb|AAH26864.1| (BC026864) Similar to meningioma expressed antigen 6 (coiled-coil
proline-rich) [Mus musculus]
Length = 779
Score = 47.0 bits (110), Expect = 5e-04
Identities = 86/386 (22%), Positives = 159/386 (40%), Gaps = 33/386 (8%)
Query: 102 RNLALDLGLGATKQEVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLI 161
R L L L A +E K + K S+ QK+ E ++ LK++ + E + + L
Sbjct: 45 REKKLALELSALIEEKCKLLDKVSIVQKE----YEGLESSLKEASFEK---ESTEAQSLE 97
Query: 162 LQKISTLFPKTTTPLEQSSLSLWAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDF 221
+ S + T LEQS +KL+D +IL+L L EE K S + +
Sbjct: 98 FVEGSQISEATYENLEQSK----SKLED--EILLLEEK-----LEEERAK---HSEQDEL 143
Query: 222 KKPTSFKTRSLYFDASLEKPDLKELEEYYHKNKVSYLDKEGKLQD-------FKSVQEQV 274
S + +SL ++ K + E + + +++ +G ++D + Q+Q+
Sbjct: 144 MADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQL 203
Query: 275 KHDLSMQKANEKAL-RSYIALKKANAQNYTTQDFEENNSPYTAEITQKLTALKPLEILKP 333
+ M K L + +AL+++ AQ Q E S +T L +L
Sbjct: 204 LQETEMMKEQVNDLDKQKVALEESRAQ--AEQALSEKESQIETLVTSLLKMKDWAAVLGE 261
Query: 334 EPFKDGFIVVQLISQIKDELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKDFKGKS-V 392
+ DG + + + S +++ N+ K ALK + K +L+ L E+ + + S V
Sbjct: 262 DIADDGNLDLDMKSGLENTAALDNQPKGALKKLIYAAKLNASLKALEGERNQVYTQLSEV 321
Query: 393 GYVSPNFGGTISEL-NQEESAKFINALFNRQEKKGFIAINNKVVLYQITEQNFNHSFSAE 451
V + I L +++ S + F + +K + LYQ E + + E
Sbjct: 322 DQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKLHRKLTVE 381
Query: 452 ESQYMQRLVNNTKTDFFDKALIEELK 477
E+ +++ +K D EEL+
Sbjct: 382 ENYRLEKEEKLSKVDEKISHATEELE 407
>emb|CAD32690.1| (AJ488495) SMC4 protein [Oryza sativa]
Length = 1236
Score = 47.0 bits (110), Expect = 5e-04
Identities = 63/266 (23%), Positives = 110/266 (40%), Gaps = 26/266 (9%)
Query: 182 SLWAKLQDKLDILILNPSDVKISLNEEEMK--KYYES--HKKDFKKPTSFKTRSLYFDAS 237
S++ K + ++L N K E E K KY E H K K KT D S
Sbjct: 306 SVYNKHAKRQEVLENNMKSCKDQFKEFERKDVKYREDLKHLKQKIKKLEDKTEK---DTS 362
Query: 238 LEKPDLKELEEYYHKNKVSYLDKE-GKLQDFKSVQEQVKHDLSMQKANE-KALRSYIALK 295
KE+EE + + L++E KLQ+ + +E+V + E + LRS +
Sbjct: 363 KIDESTKEVEE--SSSLIPQLEEEIPKLQEKFNEEEKVLEQIKENSRGETERLRSKLTQV 420
Query: 296 KANAQNYTTQDFEENNSPYTAEITQKL-------------TALKPLEILKPEPFKDGFIV 342
++ + + Q E S A +KL A +E +K + +
Sbjct: 421 RSELEPWENQIIEHKGSLDVASAEKKLMKEKVCPALYFFSNAQNQMESIKEQIKAKDTYI 480
Query: 343 VQLISQIKDELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKDFKGKSVGYVSPNFGGT 402
++L +I+ NEA+ + L QE++L+ L+ A++K+ + K+ N G
Sbjct: 481 MELQEKIEKHHSEANEARKVEQECLKQEESLIPLEQAARQKVAEI--KTTRDSEKNQGTV 538
Query: 403 ISELNQEESAKFINALFNRQEKKGFI 428
+ + Q + +K I ++ R G I
Sbjct: 539 LKAILQAKESKEIEGIYGRLGDLGAI 564
>gb|AAK69701.1|AF356511_1 (AF356511) putative peptidyl-prolyl cis-trans isomerase D
[Anaplasma phagocytophila] [Anaplasma phagocytophilum]
Length = 575
Score = 47.0 bits (110), Expect = 5e-04
Identities = 88/420 (20%), Positives = 172/420 (40%), Gaps = 40/420 (9%)
Query: 11 YLVVTIWISTIAFIAAG-MIGWGQYSFSLDSDSAAKVGQIKISQEELAQEYRRLKDAYAE 69
++V+ + +AF+ G MI G+ S S + A +G + + YR + A E
Sbjct: 9 WVVMATVLGAMAFVTFGSMIPMGKLSNSGNGQCVAMLGNKCLPLRDYRIMYRN-ELAELE 67
Query: 70 SIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAKEIRKTSVFQ- 128
+ K L+ QI +++ L ++I ++ A DLG+ + I+ +FQ
Sbjct: 68 KMLQHK-LSDAQINQFGIKEVVLKNMIADMVVEKFAHDLGIRVGSNSLRSLIKNIRIFQD 126
Query: 129 KDGVFDEELYKNILKQSHYRPKHFEESVERLL---ILQKISTLFPKTTTPLEQSSLSLWA 185
+GVFD+E Y+ +L S + + L IL + LFP L A
Sbjct: 127 ANGVFDQERYEAVLADSGMTESSYVNKIRNALPSTIL--MECLFP-NRAELHIPYYDALA 183
Query: 186 K------LQDKL-DILILNPSDVKIS---LNEEEMKKYYESHKKDFKKPTSFKTRSLYFD 235
K LQ ++ DI+ ++ V IS ++++E++K +E K+ +++ D
Sbjct: 184 KDVVLGLLQHRVADIVEISSDAVDISGSDISDDELQKLFEEQYKNSLNFPEYRSA----D 239
Query: 236 ASLEKPDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALK 295
+ D + +V K +L D + V V D + + KA + + +
Sbjct: 240 YIIMAEDDLLADVIVSDQEVDVEIKNSELHDQRDVLNLVFTDKNEAELAYKAYQEGKSFE 299
Query: 296 K-ANAQNYTTQDFEENN---SPYTAEITQKLTALKPLEILKPEPFKDGFIVVQLISQIKD 351
+ + YT +D NN + + AL E+ + G+ ++++I + +
Sbjct: 300 ELVSDAGYTIEDIALNNISKDVLPVGVRNVVFALNEGEVSEMFRSVVGWHIMKVIRKHEI 359
Query: 352 ELQNFNEAKSALKTRLTQEKTLMALQTLAKE------------KLKDFKGKSVGYVSPNF 399
++ + K + + + ++K L + K+ +LKD G + V NF
Sbjct: 360 TKEDLEKLKEKISSNIRRQKAGELLVSNVKKANDMISRGALLNELKDMFGARISGVLTNF 419
>gb|AAK17202.1|AF335500_1 (AF335500) major plasmodial myosin heavy chain [Physarum
polycephalum]
Length = 2148
Score = 46.6 bits (109), Expect = 7e-04
Identities = 77/343 (22%), Positives = 150/343 (43%), Gaps = 27/343 (7%)
Query: 42 SAAKVGQIKISQEELAQEYRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALL 101
SA KV I ++ +L +Y LK AES ++ ++Q+K + L+ + SL+ A
Sbjct: 1350 SARKV--IGDAKSKLQSDYEELKKI-AESDAAARQKAQEQVKILELQNADSQSLVQDAEA 1406
Query: 102 -------RNLALDLGLGATKQEVAKEIRKTSVFQKD-GVFDEELYKNILKQSHYRPKHFE 153
+ L+ L ++++ +E + FQK DEEL + LK +
Sbjct: 1407 AAEKIERQRRTLEADLQDVQEKLDEEQKARVRFQKQLAKTDEELRQAKLKIDDLTNATSD 1466
Query: 154 ESVERLLILQKISTLFPKTTTPLEQSSLSLWAKLQDKLDILILNPSDVKISLNEE-EMKK 212
+ + L LQ+ ++ + L++ + + W +L+ + ++ + D+K L E K
Sbjct: 1467 QYI-ALKRLQEENSNQHRELEALDEKT-AQWNRLRKQAEVQL---EDLKAQLEEAISAKL 1521
Query: 213 YYESHKKDFKKPTSFKTRSLYFDASLEKPD--LKELEEYYHKNKVSYLDKEGKLQDFKSV 270
E K+D + + +++ PD K+ +E K ++E K +D + V
Sbjct: 1522 KVEKQKRDLENKVEDLESAADVNSANVHPDELRKKQQEVDELKKQLAAEQERKTKD-EEV 1580
Query: 271 QEQVKHDLSMQKANEKALRSYIALKKANAQNYTTQDFEENNSPYTAEITQKLTALKPLEI 330
+ Q++ D++ Q E+A+ Y K NA+ + E A + + K E+
Sbjct: 1581 KRQLRKDVTTQ---EEAIEEY-ERNKLNAER-IRKKLENELEDLKASLESEQILRKKAEL 1635
Query: 331 LKPEPFKDGFIVVQ--LISQIKDELQNFNEAKSALKTRLTQEK 371
L K+G ++ + S+ ++ + E + LKT L EK
Sbjct: 1636 LAKPRGKEGATEIKPTVSSKSDEDFKKLTEELAVLKTELDGEK 1678
>gb|AAC13303.1| (AF056936) mature parasite-infected erythrocyte surface antigen
[Plasmodium falciparum]
Length = 1661
Score = 46.6 bits (109), Expect = 7e-04
Identities = 91/449 (20%), Positives = 196/449 (43%), Gaps = 70/449 (15%)
Query: 51 ISQEELAQEYRR-LKDAYAESIPDFKELTKDQIKAMHLEKSAL--------DSLINQALL 101
I QE + +E + ++ E I + +KD++ + K + D + Q +
Sbjct: 795 IGQEIIVEEVKEEIEKQVEEGIKENDTESKDKVIGQEVIKGDVNEEGPENKDKVTKQEKV 854
Query: 102 RNLALDLGLGATKQEVAKEIRKTSVF--QKDGVFDEELYKNIL--KQSHYRPKHFEESVE 157
+ + ++ K+EV K ++K + +KD V +E+ K + K + + K E+ E
Sbjct: 855 KEVKKEV-----KKEVKKRVKKRNNKNERKDNVIGKEIMKEDVNEKDTANKDKEIEQEKE 909
Query: 158 RLLILQKISTLFPKTTTPLEQSSLSLWAKLQDKLDILILNPSDVKISLNEEEMKKYYESH 217
+ + +K E+ + ++++K ++ +VK +EE+K+ E
Sbjct: 910 KEEVKEKEEVK--------EKEEVKEKEEVKEKEEVK--EKEEVK---EKEEVKEKEEVK 956
Query: 218 KKDFKKPTSFKTRSLYFDASLEKPDLKELEEYYHKNKVSYLDKEGKLQDF-KSVQEQVKH 276
+K+ K +++ + EK ++KE++E +NK + +E +++ K V+++VK
Sbjct: 957 EKEEVKEKDTESKDKEIEQEKEKEEVKEVKEKDTENKDKVIGQEIIIEEIKKEVKKRVK- 1015
Query: 277 DLSMQKANEKALRSYIALKKANAQNYTTQDFEENNSPYTAEITQKLTALKPLEILKPEPF 336
K N K N N Q+ E+ +K TA K ++++ E
Sbjct: 1016 -----KRNN---------KNENKDNVIVQEIMN-------EMLRKDTANKD-KVIEQEKE 1053
Query: 337 KDGFIVVQLISQIKDELQNFNEA--KSALKTRLTQEKTLMALQTLAKEKLKDFKGKSVGY 394
K+ + + + K+E++ E K +K + T+ K Q KE++K+ K K
Sbjct: 1054 KEEVKEKEEVKE-KEEVKEKEEVKEKEEVKEKDTESKDKEIEQEKEKEEVKEVKEKDTEN 1112
Query: 395 VSPNFG-GTISELNQEESAKFINALFNRQEKKGFIAINNKVVLYQITEQNFNHSFSAEES 453
G I E ++E K + N+ E K + V++ +I ++ N +A +
Sbjct: 1113 KDKVIGQEIIIEEIKKEVKKRVKKRNNKNENK------DNVIVQEIMNEDVNEKDTANKD 1166
Query: 454 QYMQRLVNNTKTDFFDKALIEELKKRYKI 482
+ +++ K + +K EE+K++ ++
Sbjct: 1167 KVIEQ--EKEKEEVKEK---EEVKEKEEV 1190
>ref|NP_298481.1| (NC_002488) peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
9a5c]
pir||E82712 peptidyl-prolyl cis-trans isomerase XF1191 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF84001.1|AE003953_5 (AE003953) peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
9a5c]
Length = 655
Score = 46.2 bits (108), Expect = 9e-04
Identities = 42/172 (24%), Positives = 83/172 (47%), Gaps = 8/172 (4%)
Query: 81 QIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVAKEIRKTSVFQKDGVFDEELYKN 140
+ + ++ + LD LI + ++R +A G+ + V I FQ G F+++ Y+
Sbjct: 98 EFETLNNKLKLLDQLIEEHVMRLVAEGAGVVISDGAVRSIIANDQRFQVKGKFNQDRYRL 157
Query: 141 ILKQ--SHYRPKHFEESVERLLILQKI-STLFPKTTTPLEQSSLSLWAKLQDKLDILILN 197
+L Q + P+ +E V ++ L I ST+F P + L Q + L+
Sbjct: 158 LLAQEPTMRTPQMYENYVRSMMQLSMIPSTIFDSGFVPNTELERILVLLGQTRNAELVTL 217
Query: 198 PSDVKISLNE---EEMKKYYESHKKDFKKPTSFKTRSLYFDAS-LEKPDLKE 245
P+ +K+ + E ++K++Y +H+ DF++P + + DA+ L +P E
Sbjct: 218 PA-LKLDMAEISDMQIKEWYAAHRDDFRQPETLSFEYVDLDAAHLPRPTPSE 268
>ref|NP_214166.1| (NC_000918) putative protein [Aquifex aeolicus]
pir||G70446 hypothetical protein aq_1695 - Aquifex aeolicus
gb|AAC07562.1| (AE000751) putative protein [Aquifex aeolicus]
Length = 296
Score = 45.8 bits (107), Expect = 0.001
Identities = 48/214 (22%), Positives = 87/214 (40%), Gaps = 49/214 (22%)
Query: 186 KLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFDASLEKPDLKE 245
KL DKL + +++ +E+ ++ YYE +K++F +P+S K +Y + KE
Sbjct: 115 KLVDKL------MKEQELNPSEDILRAYYEFYKREFYRPSSVKLLGIYVKSK------KE 162
Query: 246 LEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANAQNYTTQ 305
E ++S + K+G++ + V K ++ S L K +N+ T
Sbjct: 163 AE------RISQILKQGEVPSTEDV-----------KVSKPLWYSIPTLPKYIRRNFRT- 204
Query: 306 DFEENNSPYTAEITQKLTALKPLEILKPEPFKDGFIVVQLISQIKDELQNFNEAKSALKT 365
L E+ KP DG++V +++ + F AKS +K
Sbjct: 205 -------------------LSVGEVSKPIKINDGYLVFKILDKKPAGFIPFERAKSLVKK 245
Query: 366 RLTQEKTLMALQTLAKEKLKDFKGKSVGYVSPNF 399
+EK + E LK ++ +S G F
Sbjct: 246 MYLKEKRKEVFKKWLSEVLKKYQVRSTGKTCNTF 279
>ref|NP_046584.1| (NC_001884) putative transglycosylase [Bacteriophage SPBc2]
ref|NP_390018.1| (NC_000964) yomI [Bacillus subtilis]
pir||T12796 probable transglycosylase - Bacillus subtilis phage SPBc2
emb|CAB14053.1| (Z99115) yomI [Bacillus subtilis]
gb|AAC13005.1| (AF020713) putative transglycosylase [Bacteriophage SPBc2]
Length = 2285
Score = 45.1 bits (105), Expect = 0.002
Identities = 63/310 (20%), Positives = 136/310 (43%), Gaps = 46/310 (14%)
Query: 187 LQDKLDILILNPSDVKISL-NEEEMKKYYESHKKDFKKPTSFKTRSLYFDASLEKPDLKE 245
+Q KLD D + + +E M Y S K+F+K TS + +++ A +++ +
Sbjct: 1728 VQSKLDEFDKRIGDFDVRIAKDESMANRYTSDSKEFRKYTSDQKKAVAEQAKIQQQKVNW 1787
Query: 246 LEEYYHKNKVSYLDKEGKLQ--------DFKSVQEQVKHDLSMQKANEKALRSYIALKKA 297
+++ NK + +LQ D SVQ+QV+ +L Q K + +++K+
Sbjct: 1788 IQKEIKTNKALNSAQRAQLQEELKQAKLDLISVQDQVR-ELQKQLVQSKVDETLKSIEKS 1846
Query: 298 NAQNY-----------TTQDFEENNSPYTAEI----TQKLTALKPLEILKPE-PFKDGFI 341
+++ T++ E+ Y+ +I Q+ A K ++ L+ + GF
Sbjct: 1847 SSKTQGKIKDVDNKISMTEEDEDKVKYYSKQIKLIQQQQKEAKKYIKQLEEQKKAAKGFP 1906
Query: 342 VVQLISQIKDELQNFNEAKSALKTRLTQEK------------TLMALQTLAKEKLKDFKG 389
+Q QI +E+QN+ + + L K ++++ EK++D +
Sbjct: 1907 DIQ--EQITEEMQNWKDKQKDFNLELYNTKKSIKDIYKSLADEVVSIYKEMYEKMRDIEL 1964
Query: 390 KSVGYVSPNFGGTISELNQ-EESAKFINALFNRQEKKGFIAINNKVVLYQITEQNFNHSF 448
++ + + I E+++ ++ AKF L RQ+ + +++ Y + + F S
Sbjct: 1965 EAHQKATQDL---IDEIDKTDDEAKFQKELKERQD--SIQKLTDQINQYSLDDSEFGKSK 2019
Query: 449 SAEESQYMQR 458
E ++ +Q+
Sbjct: 2020 VKELTEQLQK 2029
>sp|Q96YR5|RA50_SULTO DNA double-strand break repair rad50 ATPase
Length = 879
Score = 45.1 bits (105), Expect = 0.002
Identities = 66/283 (23%), Positives = 125/283 (43%), Gaps = 47/283 (16%)
Query: 55 ELAQEYRR-LKDAYAESIPDFKELTKD---QIKAMHLEKSALDSLINQA------LLRNL 104
EL+ +++R +++ E + + EL K +I ++ S L+ +IN+ +RNL
Sbjct: 446 ELSDDHKRKIQNEIIEKLKELDELNKKFKLEINKINGLISELNQIINKKSKEKDIAIRNL 505
Query: 105 ALDLGLGATKQEVAKEIR-------KTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVE 157
A L +QE+ KEI + S++ + + +E KN+ + K+++ + E
Sbjct: 506 ADYNNLLTQQQELRKEIEEIENEIERLSIYHEKYIRLKEEEKNLKPKYEEYLKYYDVTEE 565
Query: 158 RLLILQK--------ISTLFPKT----TTPLEQSSLSLWAKLQD---------KLDILI- 195
++ L++ I + K T L Q + ++Q+ +LD L+
Sbjct: 566 KIRELERQKIELEKEIEEIMNKVREYYNTDLTQKIRDIEKRIQEIKGKENKLRELDTLLA 625
Query: 196 -LNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFDASLEKPDLKELEEYYHKNK 254
+ + KI NEEE+KK + + P F+ EK L+++ + K
Sbjct: 626 KIETAKQKIKQNEEEIKKLTDELQLLNFDPNRFQ------QIKREKEVLEKILGEINSKK 679
Query: 255 VSYLDKEGKLQ-DFKSVQEQVKHDLSMQKANEKALRSYIALKK 296
L K+ L+ D K ++EQ+K K +K + +Y LKK
Sbjct: 680 GELLGKKEVLENDIKRLEEQIKDYEEKLKNKQKLITAYDKLKK 722
>ref|NP_378103.1| (NC_003106) 882aa long hypothetical purine NTPase [Sulfolobus
tokodaii]
dbj|BAB67212.1| (AP000988) 882aa long hypothetical purine NTPase [Sulfolobus
tokodaii]
Length = 882
Score = 45.1 bits (105), Expect = 0.002
Identities = 66/283 (23%), Positives = 125/283 (43%), Gaps = 47/283 (16%)
Query: 55 ELAQEYRR-LKDAYAESIPDFKELTKD---QIKAMHLEKSALDSLINQA------LLRNL 104
EL+ +++R +++ E + + EL K +I ++ S L+ +IN+ +RNL
Sbjct: 449 ELSDDHKRKIQNEIIEKLKELDELNKKFKLEINKINGLISELNQIINKKSKEKDIAIRNL 508
Query: 105 ALDLGLGATKQEVAKEIR-------KTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVE 157
A L +QE+ KEI + S++ + + +E KN+ + K+++ + E
Sbjct: 509 ADYNNLLTQQQELRKEIEEIENEIERLSIYHEKYIRLKEEEKNLKPKYEEYLKYYDVTEE 568
Query: 158 RLLILQK--------ISTLFPKT----TTPLEQSSLSLWAKLQD---------KLDILI- 195
++ L++ I + K T L Q + ++Q+ +LD L+
Sbjct: 569 KIRELERQKIELEKEIEEIMNKVREYYNTDLTQKIRDIEKRIQEIKGKENKLRELDTLLA 628
Query: 196 -LNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFDASLEKPDLKELEEYYHKNK 254
+ + KI NEEE+KK + + P F+ EK L+++ + K
Sbjct: 629 KIETAKQKIKQNEEEIKKLTDELQLLNFDPNRFQ------QIKREKEVLEKILGEINSKK 682
Query: 255 VSYLDKEGKLQ-DFKSVQEQVKHDLSMQKANEKALRSYIALKK 296
L K+ L+ D K ++EQ+K K +K + +Y LKK
Sbjct: 683 GELLGKKEVLENDIKRLEEQIKDYEEKLKNKQKLITAYDKLKK 725
>gb|AAK97854.1|AF295804_1 (AF295804) rho coiled-coil associated kinase alpha [Danio rerio]
Length = 1375
Score = 45.1 bits (105), Expect = 0.002
Identities = 91/429 (21%), Positives = 178/429 (41%), Gaps = 55/429 (12%)
Query: 38 LDSDSAAKVGQIKISQEELAQEYRRL----KDAYAESIPDFK-ELTKDQIKAMHLEKSAL 92
+D K+ Q + QEE A + + K+ +ESI K E K+ + + E+S+
Sbjct: 674 IDMTYKLKMLQQGLEQEEAAHKATKARLADKNMISESIEGAKSEAVKELEQKLQEERSSK 733
Query: 93 DSLINQAL---LRNLALDLG----------LGATKQEVAKEIRKTSVFQKDGVFDEELYK 139
+ N+ L +N LD L K+ + +E++ ++ + V L +
Sbjct: 734 QRVENRVLELEKKNSMLDCDYKQSLQKLEELRRHKERLTEEVKNLNLKIEQEVQKRTLTQ 793
Query: 140 NILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPLEQSSLSLWAKLQDKLDILILNPS 199
N LK + + S ++L Q+I+ + + LE+ ++ L + QD +
Sbjct: 794 NDLKVQNQQLSTLRTSEKQLK--QEINHIL-EIKRSLEKQNMELRKERQD-------SDG 843
Query: 200 DVKISLNEEEMKKY----YESHKKDFKKPTSFKTRSLYFDASLEKPDLKELEEYYHKNKV 255
+K ++ E ++Y Y++ ++ K+ K + LY D +L+E +
Sbjct: 844 QMKELQDQLEAEQYFSTLYKTQVRELKEECEEKNK-LYKDVQQNLQELQEERDSLAAQLE 902
Query: 256 SYLDKEGKLQDFKSVQEQVKHDLSMQKA-NEKALRSYIALKKANA--QNYTTQDFEENNS 312
L K Q +S+ E+ DL +K E ++ +A + ++ T EE N
Sbjct: 903 ITLTKADSEQLARSIAEEQYSDLEKEKIMKELEIKEMMARHRQELAEKDTTISSLEEANR 962
Query: 313 PYTAEITQKLTALKPLEILKPEPFKDGFIVVQ-LISQIKDELQNFNEAKSALKTRLTQEK 371
T+++ + E F + + + +K+E Q+ + K AL+ +L E+
Sbjct: 963 TLTSDVANLAN--------EKEEFNNKLKEAEDYLQNLKNEEQSITQVKLALEKQLQSER 1014
Query: 372 TLMALQTLAKEKLKDFKGKSV--GYVSPNFGGTISELNQEESAKFINALFNRQEKKGFIA 429
T L+T A KL + + G S T ++E+ K L + +EK
Sbjct: 1015 T---LKTQAVNKLAEIMNRKEVRGGGSRRGNDTDVRRKEKENRKLQLELRSEREK----- 1066
Query: 430 INNKVVLYQ 438
+N+ ++ YQ
Sbjct: 1067 LNSTIIKYQ 1075
>dbj|BAB21900.1| (AB055276) hypothetical protein [Macaca fascicularis]
Length = 590
Score = 44.7 bits (104), Expect = 0.003
Identities = 98/471 (20%), Positives = 179/471 (37%), Gaps = 80/471 (16%)
Query: 38 LDSDSAAKVGQIKISQEELAQEYRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLIN 97
L + A + EEL Q +LK ES K+ +DQ +EKS L
Sbjct: 126 LKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHTYE 185
Query: 98 QALLRNLALDLGLGATKQEVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVE 157
+ +L +L G K++ K+I K F+E L K EE +
Sbjct: 186 KK-AHDLQSELDKG--KEDTQKKIHK---------FEEAL------------KEKEEQLT 221
Query: 158 RLLILQKI-----STLFPKTTTPLEQSSLSLWAKLQDKLDILILNPSDVKISLNEEEMKK 212
R+ +Q++ + +E +S ++A+++++++ + + + K SL E++ K+
Sbjct: 222 RVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSK-SLREKQSKE 280
Query: 213 Y----------YESHKKDFKKPTSFKTRSLYFDASLEKPDL-----KELEEYYHKNKVSY 257
+ YE + K + L + EK L +E+E + + +
Sbjct: 281 FLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAAN 340
Query: 258 LDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANAQNYTTQDFEENNSPYTAE 317
++ E ++Q+FK QV D+ Q Q E ++
Sbjct: 341 MEHEDQIQEFKKRDAQVIADMEAQ----------------------VQKLREELINVNSQ 378
Query: 318 ITQKLTALKPL-EILKPEPFKDGFIVVQLISQIKDELQNFNEAKSALKTRLTQEKTLMAL 376
Q+L L L E K ++ IVV + ++++ + A +T +T EK L
Sbjct: 379 RKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSRL 438
Query: 377 QTLAKEKLKDFKGKSVGYVSPNFGGTISELNQEESAKFINALFNRQ--------EKKGFI 428
+ + KE + S + TIS L +E S + + A Q EKK I
Sbjct: 439 KQIEKEYTQKLAKSS--QIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLI 496
Query: 429 AINNKV--VLYQITEQNFNHSFSAEESQYMQRLVNNTKTDFFDKALIEELK 477
N++ +L E N AE+ + L + + + + +LK
Sbjct: 497 RDNDQAIKILQDGLENRSNQVRCAEKKLQHKELESQEQITYIRQEYETKLK 547
>ref|NP_069865.1| (NC_000917) purine NTPase, putative [Archaeoglobus fulgidus]
sp|O29230|RA50_ARCFU DNA double-strand break repair rad50 ATPase
pir||H69378 purine NTPase homolog - Archaeoglobus fulgidus
gb|AAB90211.1| (AE001032) purine NTPase, putative [Archaeoglobus fulgidus]
Length = 886
Score = 44.7 bits (104), Expect = 0.003
Identities = 91/392 (23%), Positives = 164/392 (41%), Gaps = 63/392 (16%)
Query: 37 SLDSDSAAKVGQIKISQEELAQEYRRLKDAYAESIPDFKELTKD--QIKAMHLEKSALDS 94
SL ++ + +++ +E+L + ++LK+ E I D ++ K+ ++K S L+
Sbjct: 236 SLRKQESSVLQEVRGLEEKLRELEKQLKEV-VERIEDLEKKAKEVKELKPKAERYSILEK 294
Query: 95 L---INQALLRNLALDLGLGATKQEVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKH 151
L INQAL + L + +++K ++D EE+ K I
Sbjct: 295 LLSEINQALRDVEKREGDLTREAAGIQAQLKKA---EEDNSKLEEITKRI---------- 341
Query: 152 FEESVERLLILQKISTLFPKTTTPLEQSSLSLWAKLQDKLDILILNPSDVK-----ISLN 206
E +ER L + S +T P + AKL++K L P V+ +S
Sbjct: 342 --EELERELERFEKSHRLLETLKPKMDRMQGIKAKLEEKN----LTPDKVEKMYDLLSKA 395
Query: 207 EEEMKKYYESHKKDFKKPTSFKTRSLYFDASLEKPDL---------KELEEYYHKNKVSY 257
+EE K+ E KK K +S KTR ++E+ +EL+E + KN ++
Sbjct: 396 KEEEKEITEKLKKLIAKKSSLKTRGAQLKKAVEELKSAERTCPVCGRELDEEHRKNIMAE 455
Query: 258 LDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANA---QNYTTQDFEENNSPY 314
+E K + +E K D +K E+ + AL+K + + +
Sbjct: 456 YTREMK----RIAEELAKADEIEKKLKERLEKVEKALEKQETVLKYRQMVDELKALENEL 511
Query: 315 TAEITQKLTALKPLEILKPEPFKDGF-----IVVQLISQIKDELQNFNEAKSALKT---- 365
++ +KL+A + E K + DG I++ S+IK+ + E + ALK
Sbjct: 512 SSHDAEKLSA-ESEEYRKVKERLDGLRGQQKILLSSASRIKELKSSLREIEEALKNVESE 570
Query: 366 -----RLTQEKTLMALQTLAKE--KLKDFKGK 390
R +E+ +L+ L +E L+ F K
Sbjct: 571 RGELHRKIREEGFESLEELEREVQSLRPFYNK 602
>ref|NP_659473.1| (NM_145036) hypothetical protein MGC33887 [Homo sapiens]
gb|AAM49719.1|AF458591_1 (AF458591) hypothetical protein [Homo sapiens]
Length = 590
Score = 44.3 bits (103), Expect = 0.003
Identities = 103/473 (21%), Positives = 182/473 (37%), Gaps = 84/473 (17%)
Query: 38 LDSDSAAKVGQIKISQEELAQEYRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLIN 97
L + A + EEL Q +LK ES K+ +DQ +EKS L I
Sbjct: 126 LKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKH-IY 184
Query: 98 QALLRNLALDLGLGATKQEVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVE 157
+ +L +L G K++ K+I K F+E L K EE +
Sbjct: 185 EKKAHDLQSELDKG--KEDTQKKIHK---------FEEAL------------KEKEEQLT 221
Query: 158 RLLILQKI-----STLFPKTTTPLEQSSLSLWAKLQDKLDILILNPSDVKISLNEEEMKK 212
R+ +Q++ + +E +S ++A+++ +++ + + + K SL E++ K+
Sbjct: 222 RVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKKQMEKVEADLTRSK-SLREKQSKE 280
Query: 213 Y----------YESHKKDFKKPTSFKTRSLYFDASLEKPDL-----KELEEYYHKNKVSY 257
+ YE + K + L + EK L +E+E + + +
Sbjct: 281 FLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAAN 340
Query: 258 LDKEGKLQDFKSVQEQVKHDLSMQ--KANEKALRSYIALKKANAQNYTTQDFEENNSPYT 315
++ E ++Q+FK QV D+ Q K E+ L N+Q
Sbjct: 341 MEHENQIQEFKKRDAQVIADMEAQVHKLREE-------LINVNSQR-------------- 379
Query: 316 AEITQKLTALKPL-EILKPEPFKDGFIVVQLISQIKDELQNFNEAKSALKTRLTQEKTLM 374
Q+L L L E K ++ IVV + ++++ + A +T +T EK
Sbjct: 380 ---KQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANS 436
Query: 375 ALQTLAKEKLKDFKGKSVGYVSPNFGGTISELNQEESAKFINALFNRQ--------EKKG 426
L+ + KE + S + TIS L +E S + + A Q EKK
Sbjct: 437 KLKQIEKEYTQKLAKSS--QIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQ 494
Query: 427 FIAINNKV--VLYQITEQNFNHSFSAEESQYMQRLVNNTKTDFFDKALIEELK 477
I N++ VL E N AE+ + L + + + + +LK
Sbjct: 495 LIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQEYETKLK 547
>ref|XP_123485.1| (XM_123485) LaXp180 protein [Mus musculus]
Length = 1588
Score = 43.1 bits (100), Expect = 0.007
Identities = 104/455 (22%), Positives = 184/455 (39%), Gaps = 66/455 (14%)
Query: 59 EYRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEVA 118
E + LK + ++ D K+L ++I+++ E L+ Q L+ L E
Sbjct: 946 EIKELKQSREMALEDLKKLHDEKIESLRAEFQCLE----QNHLKEL-----------EDT 990
Query: 119 KEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPLEQ 178
IR T F+K + + K++ R ES I +K L L+
Sbjct: 991 LHIRHTQEFEKVMTDHNMSLEKLKKENQQRIDQMLES-HASTIQEKEQQL---QELKLKV 1046
Query: 179 SSLS-LWAKLQDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFDAS 237
S LS + KL+ +L + ++KI L E ++ K+ K +T +L
Sbjct: 1047 SDLSDMRCKLEVELALKEAETDEIKILLEESRTQQ-----KEMLKSLLEQETENL----- 1096
Query: 238 LEKPDLKELEEYYHKNKVSY------------LDKEGKLQDFKSVQEQVKHDLSMQKANE 285
+ ++ +L + H N SY ++K+ + + S E+ + L + N
Sbjct: 1097 --RTEISKLNQKIHDNNESYQVGLSELRALMTIEKDQCISELISRHEEESNILKAELDNV 1154
Query: 286 KAL--RSYIALKKANAQNYTTQD-FEENNSPYTAEITQKLTALKP-LEILKPEPFKDGFI 341
+L ++Y KK Q Q S + +K+T + E L KD
Sbjct: 1155 TSLHRQAYEIEKKLKEQIVELQTRLNSELSALEKQKDEKITQQEEKYEALIQNLEKDKER 1214
Query: 342 VVQLISQIKDEL-QNFN-EAKSALKTRLTQ---EKTLMALQTLAKEK-LKDFKGKSVGYV 395
+V+ Q K+ L Q N E A++T L + E+ L+ + L K K L++ K+ +
Sbjct: 1215 LVKNHEQDKEHLIQELNFEKNKAVQTALDEFKLERELVEKELLEKVKHLENQIAKTPAFE 1274
Query: 396 SP--NFGGTISELN---QEESAKFINALFNRQEKKGFIAINNKVVLYQITEQNFNHSFSA 450
S + ++EL QEE AKF+ L ++++K N + L + NFN +
Sbjct: 1275 SAREDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVRTSLIAEQQTNFNTVLTR 1334
Query: 451 EE-------SQYMQRLVNNTKTDFFDKALIEELKK 478
E+ + +L + + DK LIE L +
Sbjct: 1335 EKMRKENIINDLSDKLKSTMQQQERDKDLIESLSE 1369
>sp|Q00798|RBP1_PLAVB RETICULOCYTE BINDING PROTEIN 1 PRECURSOR
gb|AAA29743.1| (M88097) reticulocyte binding protein 1 [Plasmodium vivax]
Length = 2869
Score = 43.1 bits (100), Expect = 0.007
Identities = 95/410 (23%), Positives = 160/410 (38%), Gaps = 73/410 (17%)
Query: 41 DSAAKVGQIKISQEELAQEYRRLKDAYAESIPD-----FKELTKDQIKAMHLEKSAL--- 92
DS K+ ++KI E+ E RL+D ES D KE+ K +H K L
Sbjct: 642 DSKEKIYELKIEFEKSVTEINRLQD--GESARDLHEEQIKEILDKMAKKVHYLKELLSLK 699
Query: 93 ----------DSLINQALLRNLALDLGLGATKQEVAKEIRK--TSVFQKD-GVFDEELYK 139
+ L+N A N+ G A K++ +I SV+++D EE+ K
Sbjct: 700 GKSSVYFTEMNELLNTASYDNME---GFSAKKEKADNDINALYNSVYREDINALIEEVEK 756
Query: 140 NIL--KQSHYRPKHFEESVERLLILQKISTLFPKTTTPLEQSSLSLWAKLQDKLDILILN 197
+ K+S EE E+ LQ F K + ++ K+ + + N
Sbjct: 757 FVTENKESTLEMLKDEEMEEK---LQDAKETFAKLNFVSDDKLTDVYTKMSAE----VTN 809
Query: 198 PSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFDASLEKPDLKELEEYYHKNKVSY 257
+K E K++ HKK + +F T+ S+++ + + K+K +
Sbjct: 810 AEGIK---KEIAQKQFENVHKKMKEFSDAFSTKFEALQNSMQQ--YNQEGDAIEKHKQNR 864
Query: 258 LDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANAQNYT--TQDFEENNSPYT 315
+KE + FK+ E V+ DLS ++ E Q YT +F +
Sbjct: 865 SEKEEEY--FKN--ESVEEDLSREETEE--------------QEYTKHKNNFSRRKGEIS 906
Query: 316 AEITQKLTALKPLEILKPEPFKDGFIVVQLISQIKDELQNFNEAKSALKTRLTQEKTLMA 375
AEIT + +E ++ + S I D QN ALK ++ + +
Sbjct: 907 AEITNMREVINKIE----SQLNYYGVIEKYFSLIGD--QNEVSTAKALKEKIVSD----S 956
Query: 376 LQTLAKEKLKDFKGKSVGYVSPNFGGTISELNQE-ESAKFINALFNRQEK 424
L+ + +FK K+ N TI L++ +S K +N N +K
Sbjct: 957 LRDKIDQYETEFKEKTSAV--ENTVSTIQSLSKAIDSLKRLNGSINNCKK 1004
>pir||A42771 reticulocyte-binding protein 1 - Plasmodium vivax
Length = 2829
Score = 43.1 bits (100), Expect = 0.007
Identities = 95/410 (23%), Positives = 160/410 (38%), Gaps = 73/410 (17%)
Query: 41 DSAAKVGQIKISQEELAQEYRRLKDAYAESIPD-----FKELTKDQIKAMHLEKSAL--- 92
DS K+ ++KI E+ E RL+D ES D KE+ K +H K L
Sbjct: 602 DSKEKIYELKIEFEKSVTEINRLQD--GESARDLHEEQIKEILDKMAKKVHYLKELLSLK 659
Query: 93 ----------DSLINQALLRNLALDLGLGATKQEVAKEIRK--TSVFQKD-GVFDEELYK 139
+ L+N A N+ G A K++ +I SV+++D EE+ K
Sbjct: 660 GKSSVYFTEMNELLNTASYDNME---GFSAKKEKADNDINALYNSVYREDINALIEEVEK 716
Query: 140 NIL--KQSHYRPKHFEESVERLLILQKISTLFPKTTTPLEQSSLSLWAKLQDKLDILILN 197
+ K+S EE E+ LQ F K + ++ K+ + + N
Sbjct: 717 FVTENKESTLEMLKDEEMEEK---LQDAKETFAKLNFVSDDKLTDVYTKMSAE----VTN 769
Query: 198 PSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSLYFDASLEKPDLKELEEYYHKNKVSY 257
+K E K++ HKK + +F T+ S+++ + + K+K +
Sbjct: 770 AEGIK---KEIAQKQFENVHKKMKEFSDAFSTKFEALQNSMQQ--YNQEGDAIEKHKQNR 824
Query: 258 LDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANAQNYT--TQDFEENNSPYT 315
+KE + FK+ E V+ DLS ++ E Q YT +F +
Sbjct: 825 SEKEEEY--FKN--ESVEEDLSREETEE--------------QEYTKHKNNFSRRKGEIS 866
Query: 316 AEITQKLTALKPLEILKPEPFKDGFIVVQLISQIKDELQNFNEAKSALKTRLTQEKTLMA 375
AEIT + +E ++ + S I D QN ALK ++ + +
Sbjct: 867 AEITNMREVINKIE----SQLNYYGVIEKYFSLIGD--QNEVSTAKALKEKIVSD----S 916
Query: 376 LQTLAKEKLKDFKGKSVGYVSPNFGGTISELNQE-ESAKFINALFNRQEK 424
L+ + +FK K+ N TI L++ +S K +N N +K
Sbjct: 917 LRDKIDQYETEFKEKTSAV--ENTVSTIQSLSKAIDSLKRLNGSINNCKK 964
>gb|AAF58087.2| (AE003808) CG18255-PD [Drosophila melanogaster]
Length = 7210
Score = 42.7 bits (99), Expect = 0.010
Identities = 98/456 (21%), Positives = 179/456 (38%), Gaps = 64/456 (14%)
Query: 41 DSAAKVGQIKISQEELAQEYRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQAL 100
DS AK + K+ +++ +E + + D KE D +K+ + ++++ +
Sbjct: 4258 DSKAKPKKAKVLEKKSIEEAK---------LEDKKETQTDSAIDEKSQKAEVSEIVSEKI 4308
Query: 101 LRNLALDLGLGATKQEVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLL 160
A + K AK +K V +K + +E+L KQ+ +E ++
Sbjct: 4309 TDEKAQESQKEEVKDSEAKP-KKAKVLEKKSIEEEKLENKKEKQTE---SAIDEKSQKAE 4364
Query: 161 ILQKISTLFPKTTTPLEQSSLSLWAKLQDKLDILILNPSDVKISLNEEEMKKYYES--HK 218
+ + +S Q ++ + K +L ++ E++ +K ES +
Sbjct: 4365 VSEIVSEKITDEKAQESQKKEVKGSEAKPK-KAKVLEKKSIEEEKLEDKKEKQTESAIDE 4423
Query: 219 KDFKKPTSFKTRSLYFDASLEKPDLKELEEYYHK-NKVSYLDK----EGKLQDFKSVQEQ 273
K K S D ++ +E+++ K K L+K E KL+D K Q
Sbjct: 4424 KSQKAEVSEIVSEKITDEKAQESQKEEVKDSEAKPKKAKVLEKKSIEEAKLEDKKETQT- 4482
Query: 274 VKHDLSMQKANEKALRSYIALKKANAQNYTTQDFEENNSPYTAEITQKLTALKPLEILKP 333
D ++ + ++KA S I +K + EE K+ K +E K
Sbjct: 4483 ---DSAIDEKSQKAEVSEIVSEKITDEKAQESQKEEVKDSEAKPKKAKVLEKKSIEEAKL 4539
Query: 334 EPFKDGFIVVQLISQIKDELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKDFKGKSVG 393
E K+ Q S I DE E + ++T EK Q KE++KD + K
Sbjct: 4540 EDKKE----TQTDSAI-DEKSQKAEVSEIVSEKITDEKA----QESQKEEVKDSEAK--- 4587
Query: 394 YVSPNFGGTISELNQEESAKFINALFNRQEKKGFIAINNK--------VVLYQITEQNFN 445
P + + + EE L +++EK+ AI+ K +V +IT++
Sbjct: 4588 ---PKKAKVLEKKSIEE-----EKLEDKKEKQTESAIDEKSQKAEVSEIVSEKITDE--- 4636
Query: 446 HSFSAEESQYMQRLVNN----TKTDFFDKALIEELK 477
A+ESQ M+ + ++ K +K IEE K
Sbjct: 4637 ---KAQESQ-MEEVKDSEAKPKKAKVLEKKSIEEAK 4668
>gb|AAM70936.1| (AE003808) CG18255-PA [Drosophila melanogaster]
Length = 9270
Score = 42.7 bits (99), Expect = 0.010
Identities = 98/456 (21%), Positives = 179/456 (38%), Gaps = 64/456 (14%)
Query: 41 DSAAKVGQIKISQEELAQEYRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQAL 100
DS AK + K+ +++ +E + + D KE D +K+ + ++++ +
Sbjct: 4258 DSKAKPKKAKVLEKKSIEEAK---------LEDKKETQTDSAIDEKSQKAEVSEIVSEKI 4308
Query: 101 LRNLALDLGLGATKQEVAKEIRKTSVFQKDGVFDEELYKNILKQSHYRPKHFEESVERLL 160
A + K AK +K V +K + +E+L KQ+ +E ++
Sbjct: 4309 TDEKAQESQKEEVKDSEAKP-KKAKVLEKKSIEEEKLENKKEKQTE---SAIDEKSQKAE 4364
Query: 161 ILQKISTLFPKTTTPLEQSSLSLWAKLQDKLDILILNPSDVKISLNEEEMKKYYES--HK 218
+ + +S Q ++ + K +L ++ E++ +K ES +
Sbjct: 4365 VSEIVSEKITDEKAQESQKKEVKGSEAKPK-KAKVLEKKSIEEEKLEDKKEKQTESAIDE 4423
Query: 219 KDFKKPTSFKTRSLYFDASLEKPDLKELEEYYHK-NKVSYLDK----EGKLQDFKSVQEQ 273
K K S D ++ +E+++ K K L+K E KL+D K Q
Sbjct: 4424 KSQKAEVSEIVSEKITDEKAQESQKEEVKDSEAKPKKAKVLEKKSIEEAKLEDKKETQT- 4482
Query: 274 VKHDLSMQKANEKALRSYIALKKANAQNYTTQDFEENNSPYTAEITQKLTALKPLEILKP 333
D ++ + ++KA S I +K + EE K+ K +E K
Sbjct: 4483 ---DSAIDEKSQKAEVSEIVSEKITDEKAQESQKEEVKDSEAKPKKAKVLEKKSIEEAKL 4539
Query: 334 EPFKDGFIVVQLISQIKDELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKDFKGKSVG 393
E K+ Q S I DE E + ++T EK Q KE++KD + K
Sbjct: 4540 EDKKE----TQTDSAI-DEKSQKAEVSEIVSEKITDEKA----QESQKEEVKDSEAK--- 4587
Query: 394 YVSPNFGGTISELNQEESAKFINALFNRQEKKGFIAINNK--------VVLYQITEQNFN 445
P + + + EE L +++EK+ AI+ K +V +IT++
Sbjct: 4588 ---PKKAKVLEKKSIEE-----EKLEDKKEKQTESAIDEKSQKAEVSEIVSEKITDE--- 4636
Query: 446 HSFSAEESQYMQRLVNN----TKTDFFDKALIEELK 477
A+ESQ M+ + ++ K +K IEE K
Sbjct: 4637 ---KAQESQ-MEEVKDSEAKPKKAKVLEKKSIEEAK 4668
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.314 0.131 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 284,521,628
Number of Sequences: 1026957
Number of extensions: 11646029
Number of successful extensions: 43143
Number of sequences better than 1.0e-02: 50
Number of HSP's better than 0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 43040
Number of HSP's gapped (non-prelim): 90
length of query: 487
length of database: 324,149,939
effective HSP length: 125
effective length of query: 362
effective length of database: 195,780,314
effective search space: 70872473668
effective search space used: 70872473668
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 99 (42.7 bits)