BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645605|ref|NP_207781.1| hypothetical protein
[Helicobacter pylori 26695]
         (222 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207781.1|  (NC_000915) hypothetical protein [Helicoba...   451  e-126
ref|NP_223655.1|  (NC_000921) putative [Helicobacter pylori ...   431  e-120
ref|NP_223971.1|  (NC_000921) putative [Helicobacter pylori ...    51  1e-05
ref|NP_223664.1|  (NC_000921) putative [Helicobacter pylori ...    47  2e-04
ref|NP_208125.1|  (NC_000915) hypothetical protein [Helicoba...    47  2e-04

>ref|NP_207781.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||F64643 hypothetical protein HP0990 - Helicobacter pylori (strain 26695)
 gb|AAD08035.1| (AE000607) H. pylori predicted coding region HP0990 [Helicobacter
           pylori 26695]
          Length = 222

 Score =  451 bits (1161), Expect = e-126
 Identities = 222/222 (100%), Positives = 222/222 (100%)

Query: 1   MLCKMVNDSNYESEQALLATGNSSEEQKRRFLLRVKKKVNDNRQLKKKLDPFLKRLDVLQ 60
           MLCKMVNDSNYESEQALLATGNSSEEQKRRFLLRVKKKVNDNRQLKKKLDPFLKRLDVLQ
Sbjct: 1   MLCKMVNDSNYESEQALLATGNSSEEQKRRFLLRVKKKVNDNRQLKKKLDPFLKRLDVLQ 60

Query: 61  TEFGVTDPTANHNKQGIHYCTENKKTGKCDPIDNVFRTTRLDNELEQEIQTLTLDLTKAP 120
           TEFGVTDPTANHNKQGIHYCTENKKTGKCDPIDNVFRTTRLDNELEQEIQTLTLDLTKAP
Sbjct: 61  TEFGVTDPTANHNKQGIHYCTENKKTGKCDPIDNVFRTTRLDNELEQEIQTLTLDLTKAP 120

Query: 121 NKDAQSQAYANFNQRIKLLTLKYLKEITNQMLFLNQTMAMQSEIMADDYFRQNNDGFGKE 180
           NKDAQSQAYANFNQRIKLLTLKYLKEITNQMLFLNQTMAMQSEIMADDYFRQNNDGFGKE
Sbjct: 121 NKDAQSQAYANFNQRIKLLTLKYLKEITNQMLFLNQTMAMQSEIMADDYFRQNNDGFGKE 180

Query: 181 ENHIDKQLTQKRINERERARIYFQNPNVKFDQFGFPIFSIWD 222
           ENHIDKQLTQKRINERERARIYFQNPNVKFDQFGFPIFSIWD
Sbjct: 181 ENHIDKQLTQKRINERERARIYFQNPNVKFDQFGFPIFSIWD 222



>ref|NP_223655.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||F71869 hypothetical protein jhp0938 - Helicobacter pylori (strain J99)
 gb|AAD06519.1| (AE001523) putative [Helicobacter pylori J99]
          Length = 416

 Score =  431 bits (1107), Expect = e-120
 Identities = 211/222 (95%), Positives = 216/222 (97%)

Query: 1   MLCKMVNDSNYESEQALLATGNSSEEQKRRFLLRVKKKVNDNRQLKKKLDPFLKRLDVLQ 60
           MLCKMVNDSNYESEQALLATGN+ EEQKRRFLLRVKKKVNDN+QLK KLDPFLKRLDVLQ
Sbjct: 195 MLCKMVNDSNYESEQALLATGNNPEEQKRRFLLRVKKKVNDNKQLKDKLDPFLKRLDVLQ 254

Query: 61  TEFGVTDPTANHNKQGIHYCTENKKTGKCDPIDNVFRTTRLDNELEQEIQTLTLDLTKAP 120
           TEFGVTDPTANHNKQGIHYCTENK+TGKCDPI NVFRTTRLDNELEQEIQTLTLDL KA 
Sbjct: 255 TEFGVTDPTANHNKQGIHYCTENKETGKCDPIKNVFRTTRLDNELEQEIQTLTLDLIKAS 314

Query: 121 NKDAQSQAYANFNQRIKLLTLKYLKEITNQMLFLNQTMAMQSEIMADDYFRQNNDGFGKE 180
           NKDAQSQAYANFNQRIKLLTLKYLKEITNQMLFLNQTMAMQSEIM DDYFRQNNDGFG++
Sbjct: 315 NKDAQSQAYANFNQRIKLLTLKYLKEITNQMLFLNQTMAMQSEIMTDDYFRQNNDGFGEK 374

Query: 181 ENHIDKQLTQKRINERERARIYFQNPNVKFDQFGFPIFSIWD 222
           ENHIDKQLTQKRINERERARIYFQNPNVKFDQFGFPIFSIWD
Sbjct: 375 ENHIDKQLTQKRINERERARIYFQNPNVKFDQFGFPIFSIWD 416



>ref|NP_223971.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||G71828 hypothetical protein jhp1253 - Helicobacter pylori (strain J99)
 gb|AAD06839.1| (AE001549) putative [Helicobacter pylori J99]
          Length = 376

 Score = 50.8 bits (120), Expect = 1e-05
 Identities = 54/238 (22%), Positives = 96/238 (39%), Gaps = 69/238 (28%)

Query: 2   LCKMVNDSNYESEQALLAT-------GNSSEEQKRRFLLRVKKKVNDNRQLK----KKLD 50
           LC  V ++  + +Q+   T        +  +  K   L ++K K+    Q K    K   
Sbjct: 181 LCDQVLENEIQDQQSHNKTLEYNALMNHDFQAYKAMRLKKIKNKLQSQIQAKEDALKTFL 240

Query: 51  PFLKRLDVLQTEFGVTDPTANHNKQGIHYCTENKKTGKCDPIDNVFRTTRLDNELEQEIQ 110
           P  KRL+ L++ F         +K+ +  C                      N+L+Q  Q
Sbjct: 241 PLEKRLETLKSRFLC-------DKENLKSCA---------------------NQLQQRYQ 272

Query: 111 TLTLDLTKA-----PNKDAQSQAYANFNQRIKLLTLKYLKEITNQMLFLNQTMAMQSEIM 165
              ++  K       NK+  +   AN+   +K L +++L E++ QM FLN+TMA+ ++++
Sbjct: 273 NALIERDKELKNAKNNKEKHALILANYEHTLKTLNIEFLSELSEQMAFLNETMALNAQVL 332

Query: 166 ADDYFRQNNDGFGKEENHIDKQLTQKRINERE-----RARIYFQNPNVKFDQFGFPIF 218
           A                 + +Q T+K  N  +     +A I     N++ D  GFP F
Sbjct: 333 A----------------LLAQQQTKKPFNVSDGLSGGKALI----KNIRLDPHGFPSF 370



>ref|NP_223664.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||E71868 hypothetical protein jhp0947 - Helicobacter pylori (strain J99)
 gb|AAD06525.1| (AE001524) putative [Helicobacter pylori J99]
          Length = 466

 Score = 47.0 bits (110), Expect = 2e-04
 Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 31/224 (13%)

Query: 8   DSNYESEQALLATGNSSEEQKRRFLLRVKKKVNDNRQLKKKLDPFLKRLDVLQTEFGVTD 67
           +++Y + + L A     EE KR+    V  KV   + +    D    ++D    E GV  
Sbjct: 237 NNDYTAYEKLRA---EKEELKRQIASNVYAKVK--QLVVASQDRAFSQMD---NELGVKT 288

Query: 68  PTANHNKQGIHYCTENKKTGKCDPIDNVFRTTRLDNELEQEIQTLTLDLTK---APNKDA 124
              N       YC +  + GK + I N+    RL  + ++    L LD ++       +A
Sbjct: 289 FGFNDENVKKGYCKKENRNGKSECIPNMLNVNRLKAQFDE----LNLDYSRDIAGKKGEA 344

Query: 125 QSQAYANFNQRIKLLTLKYLKEITNQMLFLNQTMAMQSEIMADDYFRQNNDGFG------ 178
            ++ + ++  R + L+++   EI   + F+N+T+ +  + M    F+Q    F       
Sbjct: 345 AAKVFNDYKHRFQQLSVETALEIAQNLSFMNKTLGLMVQ-MQSYAFKQQMGYFEDIIPAD 403

Query: 179 --KEENHIDKQLTQKRINERERARIYFQNPNVKFDQFGFPIFSI 220
             K++    + L QK   ++E  ++Y      K D +GFP  S+
Sbjct: 404 ALKDDKEHQENLEQK---QQEIEKVY----RAKLDAYGFPNGSV 440



>ref|NP_208125.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||E64686 myosin-like protein - Helicobacter pylori (strain 26695)
 gb|AAD08388.1| (AE000635) H. pylori predicted coding region HP1333 [Helicobacter
           pylori 26695]
          Length = 382

 Score = 47.0 bits (110), Expect = 2e-04
 Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 33/143 (23%)

Query: 29  RRFLLRVKKKVNDNRQLKKKLDPFLKRLDVLQTEFGVTDPTANHNKQGIHYCTENKKTGK 88
           ++F  +++ ++       K   P  KRL+ L+T F         +K+ +  C +      
Sbjct: 219 KKFKNKLQSQIQAQEDALKTFLPLEKRLETLKTHFLC-------DKENLKSCAK------ 265

Query: 89  CDPIDNVFRTTRLDNELEQEIQTLTLDLTKA-----PNKDAQSQAYANFNQRIKLLTLKY 143
                          EL Q  Q   ++  K       NK+  +   AN+   +K L +++
Sbjct: 266 ---------------ELHQRYQNALIERDKELKNAKNNKEKHALILANYEHTLKTLNIEF 310

Query: 144 LKEITNQMLFLNQTMAMQSEIMA 166
           L E+  QM FLN+TMA+ + ++A
Sbjct: 311 LSELNKQMAFLNETMALNARVLA 333



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.317    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,928,538
Number of Sequences: 1026957
Number of extensions: 5184501
Number of successful extensions: 15934
Number of sequences better than 1.0e-02: 5
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15927
Number of HSP's gapped (non-prelim): 7
length of query: 222
length of database: 324,149,939
effective HSP length: 117
effective length of query: 105
effective length of database: 203,995,970
effective search space: 21419576850
effective search space used: 21419576850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 95 (41.2 bits)