BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645606|ref|NP_207782.1| hypothetical protein
[Helicobacter pylori 26695]
         (209 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207782.1|  (NC_000915) hypothetical protein [Helicoba...   441  e-123
ref|NP_223656.1|  (NC_000921) putative [Helicobacter pylori ...   435  e-121
ref|NP_207783.1|  (NC_000915) hypothetical protein [Helicoba...    42  0.006

>ref|NP_207782.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||G64643 hypothetical protein HP0991 - Helicobacter pylori (strain 26695)
 gb|AAD08036.1| (AE000607) H. pylori predicted coding region HP0991 [Helicobacter
           pylori 26695]
          Length = 209

 Score =  441 bits (1134), Expect = e-123
 Identities = 209/209 (100%), Positives = 209/209 (100%)

Query: 1   MAFEMKEHSKEFPNKKQLQTMLENAFDNGAESFIDDWHERFGGISRENTYKALGIKEYSD 60
           MAFEMKEHSKEFPNKKQLQTMLENAFDNGAESFIDDWHERFGGISRENTYKALGIKEYSD
Sbjct: 1   MAFEMKEHSKEFPNKKQLQTMLENAFDNGAESFIDDWHERFGGISRENTYKALGIKEYSD 60

Query: 61  EGKILAFGERSYIRQYKKDFEESTYDTRQTLSAMANMGGENDYKITWLKPKYQLHSSNNI 120
           EGKILAFGERSYIRQYKKDFEESTYDTRQTLSAMANMGGENDYKITWLKPKYQLHSSNNI
Sbjct: 61  EGKILAFGERSYIRQYKKDFEESTYDTRQTLSAMANMGGENDYKITWLKPKYQLHSSNNI 120

Query: 121 KPLMSNTELLNMIELTNIKKEYVMGCNMEIDGSKYPIHKDWGFFGKAKVPETWRNKIWEC 180
           KPLMSNTELLNMIELTNIKKEYVMGCNMEIDGSKYPIHKDWGFFGKAKVPETWRNKIWEC
Sbjct: 121 KPLMSNTELLNMIELTNIKKEYVMGCNMEIDGSKYPIHKDWGFFGKAKVPETWRNKIWEC 180

Query: 181 IKNKVKSYDNTTTKIGIVWKKNTYSISHH 209
           IKNKVKSYDNTTTKIGIVWKKNTYSISHH
Sbjct: 181 IKNKVKSYDNTTTKIGIVWKKNTYSISHH 209



>ref|NP_223656.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||G71869 hypothetical protein jhp0939 - Helicobacter pylori (strain J99)
 gb|AAD06520.1| (AE001523) putative [Helicobacter pylori J99]
          Length = 337

 Score =  435 bits (1119), Expect = e-121
 Identities = 206/209 (98%), Positives = 207/209 (98%)

Query: 1   MAFEMKEHSKEFPNKKQLQTMLENAFDNGAESFIDDWHERFGGISRENTYKALGIKEYSD 60
           MAFEMKEHSKEFPNKKQLQTMLENAFDNGAESFIDDWHERFGGISRENTYKALGIKEYSD
Sbjct: 129 MAFEMKEHSKEFPNKKQLQTMLENAFDNGAESFIDDWHERFGGISRENTYKALGIKEYSD 188

Query: 61  EGKILAFGERSYIRQYKKDFEESTYDTRQTLSAMANMGGENDYKITWLKPKYQLHSSNNI 120
           EGKILAFGERSYIRQYKKDFEESTYDTRQTLSAMANM GENDYKITWLKPKYQLHSSNNI
Sbjct: 189 EGKILAFGERSYIRQYKKDFEESTYDTRQTLSAMANMSGENDYKITWLKPKYQLHSSNNI 248

Query: 121 KPLMSNTELLNMIELTNIKKEYVMGCNMEIDGSKYPIHKDWGFFGKAKVPETWRNKIWEC 180
           KPLMSNTELLNMIELTNIKKEYVMGCNMEIDGSKYPIHKDWGFFGKAKVPETWRNKIWEC
Sbjct: 249 KPLMSNTELLNMIELTNIKKEYVMGCNMEIDGSKYPIHKDWGFFGKAKVPETWRNKIWEC 308

Query: 181 IKNKVKSYDNTTTKIGIVWKKNTYSISHH 209
           IKNKVKSYDNTT +IGIVWKKNTYSISHH
Sbjct: 309 IKNKVKSYDNTTAEIGIVWKKNTYSISHH 337



 Score = 53.1 bits (126), Expect = 2e-06
 Identities = 23/64 (35%), Positives = 43/64 (66%), Gaps = 3/64 (4%)

Query: 121 KPLMSNTELLNMIELTNIKKEYVMGCNMEIDGSKYPIHKDWGFFGKAKVPETWRNKIWEC 180
           KPL+S+ +LL  ++L NIK++ +  CN ++DGS+Y ++  W      + P+ +R KI+EC
Sbjct: 30  KPLLSDEDLLKRVKLHNIKEDTLTSCNAKVDGSQY-LNSGWNL--SKEFPQEYREKIFEC 86

Query: 181 IKNK 184
           ++ +
Sbjct: 87  VEEE 90



>ref|NP_207783.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||H64643 hypothetical protein HP0992 - Helicobacter pylori (strain 26695)
 gb|AAD08037.1| (AE000607) H. pylori predicted coding region HP0992 [Helicobacter
           pylori 26695]
          Length = 79

 Score = 41.6 bits (96), Expect = 0.006
 Identities = 17/41 (41%), Positives = 30/41 (72%), Gaps = 1/41 (2%)

Query: 121 KPLMSNTELLNMIELTNIKKEYVMGCNMEIDGSKYPIHKDW 161
           KPL+S+ +LL  ++L NIK++ +  CN ++DGS+Y ++  W
Sbjct: 30  KPLLSDEDLLKRVKLHNIKEDTLTSCNAKVDGSQY-LNSGW 69



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.315    0.132    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,148,427
Number of Sequences: 1026957
Number of extensions: 5937736
Number of successful extensions: 15277
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15273
Number of HSP's gapped (non-prelim): 4
length of query: 209
length of database: 324,149,939
effective HSP length: 116
effective length of query: 93
effective length of database: 205,022,927
effective search space: 19067132211
effective search space used: 19067132211
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 94 (40.8 bits)