BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644730|ref|NP_206900.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(368 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206900.1| (NC_000915) conserved hypothetical protein... 731 0.0
ref|NP_222813.1| (NC_000921) putative [Helicobacter pylori ... 719 0.0
ref|NP_281466.1| (NC_002163) hypothetical protein Cj0272 [C... 221 1e-56
ref|NP_213479.1| (NC_000918) hypothetical protein [Aquifex ... 167 2e-40
ref|NP_228540.1| (NC_000853) conserved hypothetical protein... 107 2e-22
ref|NP_360957.1| (NC_003103) unknown [Rickettsia conorii] >... 106 5e-22
ref|NP_245282.1| (NC_002663) unknown [Pasteurella multocida... 105 1e-21
ref|NP_439043.1| (NC_000907) H. influenzae predicted coding... 104 2e-21
ref|NP_603418.1| (NC_003454) DNA integration/recombination/... 102 7e-21
ref|NP_348204.1| (NC_003030) Ncharacterized conserved prote... 102 9e-21
ref|NP_284174.1| (NC_003116) hypothetical protein NMA1447 [... 100 3e-20
ref|NP_221199.1| (NC_000963) unknown [Rickettsia prowazekii... 97 3e-19
ref|NP_274073.1| (NC_003112) conserved hypothetical protein... 97 3e-19
ref|NP_299552.1| (NC_002488) conserved hypothetical protein... 94 3e-18
ref|NP_640688.1| (NC_003919) conserved hypothetical protein... 92 7e-18
ref|NP_267523.1| (NC_002662) conserved hypothetical protein... 88 1e-16
ref|NP_268593.1| (NC_002737) conserved hypothetical protein... 87 3e-16
ref|NP_606506.1| (NC_003485) conserved hypothetical protein... 87 3e-16
ref|NP_373115.1| (NC_002758) conserved hypothetical protein... 83 4e-15
gb|EAA02042.1| (AAAB01002263) agCP9186 [Anopheles gambiae s... 65 1e-09
>ref|NP_206900.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||D64532 conserved hypothetical protein HP0100 - Helicobacter pylori
(strain 26695)
gb|AAD07168.1| (AE000531) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 368
Score = 731 bits (1888), Expect = 0.0
Identities = 368/368 (100%), Positives = 368/368 (100%)
Query: 1 MLIHICCSVDNLYFLKKAKEAFAGEKIVGFFYNPNIHPYSEYLLRLEDVKRTCEMLGIEL 60
MLIHICCSVDNLYFLKKAKEAFAGEKIVGFFYNPNIHPYSEYLLRLEDVKRTCEMLGIEL
Sbjct: 1 MLIHICCSVDNLYFLKKAKEAFAGEKIVGFFYNPNIHPYSEYLLRLEDVKRTCEMLGIEL 60
Query: 61 LEGDYELEKFLDKAKGKELLGEKSERCFECFDLRLEASALKAFELGEEKFTTTLLTSPKK 120
LEGDYELEKFLDKAKGKELLGEKSERCFECFDLRLEASALKAFELGEEKFTTTLLTSPKK
Sbjct: 61 LEGDYELEKFLDKAKGKELLGEKSERCFECFDLRLEASALKAFELGEEKFTTTLLTSPKK 120
Query: 121 DPNQLIAKGQSIAQRHNLEFVVFRNDNFEHFKSELDLNLQALARENELYRQNYCGCQFAL 180
DPNQLIAKGQSIAQRHNLEFVVFRNDNFEHFKSELDLNLQALARENELYRQNYCGCQFAL
Sbjct: 121 DPNQLIAKGQSIAQRHNLEFVVFRNDNFEHFKSELDLNLQALARENELYRQNYCGCQFAL 180
Query: 181 KIQKESQNRSPFELYSPLKRQILPASIEERTQVFRTLDMAKKDANKPFLAQKTIATYRLL 240
KIQKESQNRSPFELYSPLKRQILPASIEERTQVFRTLDMAKKDANKPFLAQKTIATYRLL
Sbjct: 181 KIQKESQNRSPFELYSPLKRQILPASIEERTQVFRTLDMAKKDANKPFLAQKTIATYRLL 240
Query: 241 NGGVWLSKNSNPLNCCILARSKSKAKVRINDLRWVFSQRLSVLVGYSQRDETLFLTLEGL 300
NGGVWLSKNSNPLNCCILARSKSKAKVRINDLRWVFSQRLSVLVGYSQRDETLFLTLEGL
Sbjct: 241 NGGVWLSKNSNPLNCCILARSKSKAKVRINDLRWVFSQRLSVLVGYSQRDETLFLTLEGL 300
Query: 301 NTLMAKNYDNLKELNLNPLNYEEELSLRALVSGSESINPIIVLEERTEKTLFVEIKSVFQ 360
NTLMAKNYDNLKELNLNPLNYEEELSLRALVSGSESINPIIVLEERTEKTLFVEIKSVFQ
Sbjct: 301 NTLMAKNYDNLKELNLNPLNYEEELSLRALVSGSESINPIIVLEERTEKTLFVEIKSVFQ 360
Query: 361 EEKVFYLL 368
EEKVFYLL
Sbjct: 361 EEKVFYLL 368
>ref|NP_222813.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71975 hypothetical protein jhp0092 - Helicobacter pylori (strain J99)
gb|AAD05673.1| (AE001448) putative [Helicobacter pylori J99]
Length = 368
Score = 719 bits (1856), Expect = 0.0
Identities = 361/368 (98%), Positives = 364/368 (98%)
Query: 1 MLIHICCSVDNLYFLKKAKEAFAGEKIVGFFYNPNIHPYSEYLLRLEDVKRTCEMLGIEL 60
MLIHICCSVDNLYFLKKAKEAFAGEKIVGFFYNPNIHPYSEYLLRLEDVKRTCEMLGIEL
Sbjct: 1 MLIHICCSVDNLYFLKKAKEAFAGEKIVGFFYNPNIHPYSEYLLRLEDVKRTCEMLGIEL 60
Query: 61 LEGDYELEKFLDKAKGKELLGEKSERCFECFDLRLEASALKAFELGEEKFTTTLLTSPKK 120
LEGDYELEKFLDKAKGKELLGEKSERCFECFDLRLEASALKAFELGEEKFTTTLLTSPKK
Sbjct: 61 LEGDYELEKFLDKAKGKELLGEKSERCFECFDLRLEASALKAFELGEEKFTTTLLTSPKK 120
Query: 121 DPNQLIAKGQSIAQRHNLEFVVFRNDNFEHFKSELDLNLQALARENELYRQNYCGCQFAL 180
DPNQLIAKGQ IAQRHNLEFVVFRNDNFEHFKSELDLNLQALARENELYRQNYCGCQFAL
Sbjct: 121 DPNQLIAKGQHIAQRHNLEFVVFRNDNFEHFKSELDLNLQALARENELYRQNYCGCQFAL 180
Query: 181 KIQKESQNRSPFELYSPLKRQILPASIEERTQVFRTLDMAKKDANKPFLAQKTIATYRLL 240
KIQKESQNRSPFELYSPLKRQILPASIEERTQVFR LD AKKDANKPFLAQKTIATYRLL
Sbjct: 181 KIQKESQNRSPFELYSPLKRQILPASIEERTQVFRELDAAKKDANKPFLAQKTIATYRLL 240
Query: 241 NGGVWLSKNSNPLNCCILARSKSKAKVRINDLRWVFSQRLSVLVGYSQRDETLFLTLEGL 300
NGGVWLSKNSNPL+CCILARSKSKAKVRINDLRWVFSQRLS LVGYSQRDETLFLTLEGL
Sbjct: 241 NGGVWLSKNSNPLDCCILARSKSKAKVRINDLRWVFSQRLSALVGYSQRDETLFLTLEGL 300
Query: 301 NTLMAKNYDNLKELNLNPLNYEEELSLRALVSGSESINPIIVLEERTEKTLFVEIKSVFQ 360
NTLMAKNYDNLKELNLNPL+YEEELSLRALVSGSESINPIIVLEERTEKTLFVEIKS+FQ
Sbjct: 301 NTLMAKNYDNLKELNLNPLSYEEELSLRALVSGSESINPIIVLEERTEKTLFVEIKSIFQ 360
Query: 361 EEKVFYLL 368
EEKVFYLL
Sbjct: 361 EEKVFYLL 368
>ref|NP_281466.1| (NC_002163) hypothetical protein Cj0272 [Campylobacter jejuni]
pir||G81445 hypothetical protein Cj0272 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72740.1| (AL139074) hypothetical protein Cj0272 [Campylobacter jejuni]
Length = 363
Score = 221 bits (563), Expect = 1e-56
Identities = 134/346 (38%), Positives = 199/346 (56%), Gaps = 11/346 (3%)
Query: 1 MLIHICCSVDNLYFLKKAKEAFAGEKIVGFFYNPNIHPYSEYLLRLEDVKRTCEMLGIEL 60
ML+HICCSVD+ YF+++ ++ + EKI+G+FY+PNIHP SEY LR DVKR+C+ LGI+L
Sbjct: 1 MLVHICCSVDSHYFIEELRKTYPDEKIIGYFYDPNIHPLSEYELRFLDVKRSCDKLGIKL 60
Query: 61 LEGDYELEKFLDKAKGKELLGEKSERCFECFDLRLEASALKAFELGEEKFTTTLLTSPKK 120
+G+YE EK+L+ +G E EK RC CFD+R+ +S A ++GE+K TTTLLTSPKK
Sbjct: 61 YKGEYEYEKWLNAVRGYEDEPEKGARCEICFDVRMGSSVKFAAKIGEKKLTTTLLTSPKK 120
Query: 121 DPNQLIAKGQSIAQRHNLEFVVFRNDNFEHFKSELDLNLQ-ALARENELYRQNYCGCQFA 179
D QL Q + + +EF+ F+ Q ALA++ LY QNYCGC +
Sbjct: 121 DLEQLKNALQKECEPYGVEFLA------PDFRKNGGTQRQFALAKKEMLYHQNYCGCIYG 174
Query: 180 LKIQKESQNRSPFELYSPLKRQILPASIEERTQVFRTLDMAKKDANKPFLAQKTIATYRL 239
LK QK+ +N EL S + +QILP SIE R +++ + + +K K + ++ YRL
Sbjct: 175 LKKQKQDKNFID-ELMSSVNKQILPVSIEARIALYKKVVLWEKKGIKFEILREKFLNYRL 233
Query: 240 LNGGVWLSKNSNPLNCCILARSKSK-AKVRINDLRWVFSQRLSVLVGYSQRDETLFLTLE 298
L+ + L K P+ IL S K A R + Q L S +DE + +
Sbjct: 234 LSALIKLDK--KPVKSHILFYSHFKNAYTRFSLDEENLKQNLKEGFYRSTKDEIVLVEFW 291
Query: 299 GLNTLMAKNYDNLKELNLNPLNYEEELSLRALVSGSESINPIIVLE 344
N + N ++ PL+ + E+ R + G+ +++PII+LE
Sbjct: 292 RFNAFFKNKWKNFEDFLKKPLSVQAEIKWRNKLFGTYNLSPIIILE 337
>ref|NP_213479.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
pir||C70361 conserved hypothetical protein aq_701 - Aquifex aeolicus
gb|AAC06891.1| (AE000703) hypothetical protein [Aquifex aeolicus]
Length = 413
Score = 167 bits (422), Expect = 2e-40
Identities = 97/240 (40%), Positives = 141/240 (58%), Gaps = 15/240 (6%)
Query: 1 MLIHICCSVDNLYFLKKAKEAFAGEKIVGFFYNPNIHPYSEYLLRLEDVKRTCEMLGIEL 60
+L+HICC+ D +YFLKK +E + +I+G+FY+PNIHPY EY LR + +R C+ LGI L
Sbjct: 6 ILVHICCAPDAIYFLKKLREDYPESEIIGYFYDPNIHPYEEYRLRYLETERICKELGINL 65
Query: 61 LEGDYELEKFLDKAKGKELLGEKSERCFECFDLRLEASALKAFELGEEKFTTTLLTSPKK 120
+EG+Y+LE +L++ KG E E+ +RC CFD RLE SA A ELG + TTTLL SPKK
Sbjct: 66 IEGEYDLENWLERVKGYEDEPERGKRCQICFDYRLEKSAEVAKELGCDALTTTLLMSPKK 125
Query: 121 DPNQLIAKGQSIAQRHNLEFVVFRNDNFEHFKSELDLNLQALARENELYRQNYCGCQFAL 180
QL G+ +R +EF+ ++ K + L++E E+Y+Q+YCGC + L
Sbjct: 126 SIPQLKKAGEEATKRTGIEFLA-----PDYRKGGGTQEMFKLSKEREIYQQDYCGCIYGL 180
Query: 181 KIQKESQNRSPFELYSPLKRQILPASIEERTQVFRTLDMAK------KDANKPFLAQKTI 234
K+ + ++L L R+ P S EER + A+ K+ PFL K +
Sbjct: 181 --FKQKNGKIFWDLVGFLGRR--PGSKEERNFIKEIRIFAEENSFPVKEYEFPFLNWKVL 236
>ref|NP_228540.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
pir||F72338 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD35833.1|AE001744_23 (AE001744) conserved hypothetical protein [Thermotoga maritima]
Length = 192
Score = 107 bits (267), Expect = 2e-22
Identities = 67/189 (35%), Positives = 103/189 (54%), Gaps = 16/189 (8%)
Query: 1 MLIHICCSVDNLYFLKKAKEAFAGEKIVGFFYNPNIHPYSEYLLRLEDVKRTCEMLGIEL 60
+LIH+CC+ D L + ++A FFYNPNI P SEY R E V + + +
Sbjct: 4 VLIHVCCAPDLLTTIFHVRDAEF------FFYNPNIQPLSEYEKRREAVDKVANHFSLNV 57
Query: 61 LEGDY---ELEKFLDKAKGKELLGEKSERCFECFDLRLEASALKAFELGEEKFTTTLLTS 117
G+Y E+ K+ K + LGE S+RC C LE +A +A + G E F+TTLL S
Sbjct: 58 RYGEYSTEEIRKWYTAVKDYKDLGEGSKRCERCISFLLERTAQEARKRGHESFSTTLLAS 117
Query: 118 PKKDPNQLIAKGQSIAQRHNLEFVVFRNDNFEHF-KSELDLNLQALARENELYRQNYCGC 176
P+K+ + G++I +++ ++F F++F K L++E +YRQNYCGC
Sbjct: 118 PRKNLPMIENIGKTIEEKYGVKFF------FKNFRKGGAYQEGVRLSKELGIYRQNYCGC 171
Query: 177 QFALKIQKE 185
F+L ++E
Sbjct: 172 VFSLLERRE 180
>ref|NP_360957.1| (NC_003103) unknown [Rickettsia conorii]
gb|AAL03858.1| (AE008678) unknown [Rickettsia conorii]
Length = 209
Score = 106 bits (264), Expect = 5e-22
Identities = 66/197 (33%), Positives = 103/197 (51%), Gaps = 9/197 (4%)
Query: 1 MLIHICCSVDNLYFLKKAKEAFAGEKIVGFFYNPNIHPYSEYLLRLEDVKRTCEMLGIEL 60
+L+H CC+ ++K + G K + FFYNPNIHP EY LR + + E IE
Sbjct: 14 VLLHCCCAPCVGPLMEKMIDT--GIKFMLFFYNPNIHPKKEYELRKNENIKFAEKHNIEF 71
Query: 61 LEGDYELEKFLDKAKGKELLGEKSERCFECFDLRLEASALKAFELGEEKFTTTLLTSPKK 120
++ DY+ + + +AKG EL E+ RC CFD+R E +AL A+E G + T++L S K
Sbjct: 72 IDADYDPQNWFRRAKGMELEPERGIRCTMCFDMRFERTALYAYENGFKVITSSLGISRWK 131
Query: 121 DPNQLIAKGQSIAQRHNLEFVVFRNDNFEHFKSELDLNLQALARENELYRQNYCGCQFAL 180
D NQ+ G A + E V + N+ K + +A+E Y+Q +CGC ++
Sbjct: 132 DMNQINESGTRAASHY--EGVTYWTYNWR--KDGGASRMYEIAKEEHFYKQEFCGCVYSF 187
Query: 181 KIQKE---SQNRSPFEL 194
+ + + NR E+
Sbjct: 188 RDTNDWRVANNRPKIEI 204
>ref|NP_245282.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK02429.1| (AE006070) unknown [Pasteurella multocida]
Length = 233
Score = 105 bits (261), Expect = 1e-21
Identities = 64/197 (32%), Positives = 105/197 (52%), Gaps = 9/197 (4%)
Query: 1 MLIHICCSVDNLYFLKKAKEAFAGEKIVGFFYNPNIHPYSEYLLRLEDVKRTCEMLGIEL 60
+L+H CC+ + ++ + G + +FYNPNIHP EYL+R E+ R E GI
Sbjct: 35 LLLHSCCAPCSGEVMEAIHAS--GIEFTIYFYNPNIHPLKEYLIRKEENIRFAEKWGIPF 92
Query: 61 LEGDYELEKFLDKAKGKELLGEKSERCFECFDLRLEASALKAFELGEEKFTTTLLTSPKK 120
++ DY+ +++ D+AKG E E+ RC CFD+R E +A A G FT+ L S K
Sbjct: 93 IDADYDRQEWFDRAKGMEDEPERGIRCTMCFDMRFEKAAEYAHNNGFPVFTSCLGISRWK 152
Query: 121 DPNQLIAKGQSIAQRHNLEFVVFRNDNFEHFKSELDLNLQALARENELYRQNYCGCQFAL 180
D NQ+ G A+++ + VV+ + N+ K + +++ Y+Q YCGC ++L
Sbjct: 153 DMNQINGCGHRAAEKY--DDVVYWDYNWR--KGGGSQRMIEISKRERFYQQEYCGCVYSL 208
Query: 181 KIQ---KESQNRSPFEL 194
+ +E+ R E+
Sbjct: 209 RDTNKWREANGRQKIEI 225
>ref|NP_439043.1| (NC_000907) H. influenzae predicted coding region HI0882
[Haemophilus influenzae Rd]
sp|P44068|Y882_HAEIN Protein HI0882
pir||E64015 hypothetical protein HI0882 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC22546.1| (U32770) H. influenzae predicted coding region HI0882 [Haemophilus
influenzae Rd]
Length = 245
Score = 104 bits (259), Expect = 2e-21
Identities = 61/183 (33%), Positives = 100/183 (54%), Gaps = 10/183 (5%)
Query: 1 MLIHICCSVDNLYFLKKAKEAF--AGEKIVGFFYNPNIHPYSEYLLRLEDVKRTCEMLGI 58
+L+H CC+ + + EA +G + +FYNPNIHP EYL+R E+ R + GI
Sbjct: 47 LLLHSCCAPCS----GEVMEAILASGIEFTIYFYNPNIHPLKEYLIRKEENIRFAKKFGI 102
Query: 59 ELLEGDYELEKFLDKAKGKELLGEKSERCFECFDLRLEASALKAFELGEEKFTTTLLTSP 118
++ DY+ + + D+AKG E E+ RC CFD+R E +A A + G FT+ L S
Sbjct: 103 PFIDADYDRQNWFDRAKGMEWEPERGIRCTMCFDMRFEKAAEYAHKHGFPVFTSCLGISR 162
Query: 119 KKDPNQLIAKGQSIAQRHNLEFVVFRNDNFEHFKSELDLNLQALARENELYRQNYCGCQF 178
KD NQ+ G A+++ + V++ + N+ K + +++ Y+Q YCGC +
Sbjct: 163 WKDMNQINGCGHRAAEKY--DDVIYWDYNWR--KEGGSQRMIEISKRERFYQQEYCGCVY 218
Query: 179 ALK 181
+L+
Sbjct: 219 SLR 221
>ref|NP_603418.1| (NC_003454) DNA integration/recombination/invertion protein
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gb|AAL94717.1| (AE010564) DNA integration/recombination/invertion protein
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Length = 222
Score = 102 bits (254), Expect = 7e-21
Identities = 67/197 (34%), Positives = 107/197 (54%), Gaps = 14/197 (7%)
Query: 1 MLIHICCSVDNLYFLKKAKEAFAGEKIVGFFYNPNIHPYSEYLLRLEDVKRTCEMLGIEL 60
+LIH CC + L+ K+ F KI ++YNPNI EY R ++ K + L ++
Sbjct: 25 LLIHSCCGPCSSSVLEYLKDYF---KIDIYYYNPNITFDYEYYARKQEQKDMLKKLNYDM 81
Query: 61 --LEGDYE-LEKFLDKAKGKELLGEKSERCFECFDLRLEASALKAFELGEEKFTTTLLTS 117
+EG Y E F +K KG E E +RC+ C+D+R+ +A KA E G + F+T L S
Sbjct: 82 NVIEGIYNPKEDFFEKIKGLENEKEGGKRCYSCYDIRIRETAKKAKEEGYDFFSTVLSIS 141
Query: 118 PKKDPNQLIAKGQSIAQRHNLEFVVFRNDNFEHFKSE-LDLNLQALARENELYRQNYCGC 176
P K+ N + G+ ++ +++ F+ F FK + L +++E +YRQ YCGC
Sbjct: 142 PMKNVNYINEIGEKYSKEYDIPFL------FADFKKKNRYLRSVQISKELNMYRQEYCGC 195
Query: 177 QFALKIQKESQNRSPFE 193
F+ K++KE ++R E
Sbjct: 196 VFS-KVEKEQRDREKAE 211
>ref|NP_348204.1| (NC_003030) Ncharacterized conserved protein [Clostridium
acetobutylicum]
gb|AAK79544.1|AE007667_9 (AE007667) Ncharacterized conserved protein [Clostridium
acetobutylicum]
Length = 208
Score = 102 bits (253), Expect = 9e-21
Identities = 59/191 (30%), Positives = 101/191 (51%), Gaps = 12/191 (6%)
Query: 1 MLIHICCSVDNLYFLKKAKEAFAGEKIVGFFYNPNIHPYSEYLLRLEDVKRTCEMLG--- 57
+L+H CC+ + Y ++ F I F+YNPNI+P EY R+++ K
Sbjct: 26 LLLHSCCAPCSTYVVEYLSNYF---NITVFYYNPNIYPEDEYRRRVQEEKDFISEFNTKY 82
Query: 58 -IELLEGDYELEKFLDKAKGKELLGEKSERCFECFDLRLEASALKAFELGEEKFTTTLLT 116
+ +EGDYE ++F + +G E E ERCF+C++LRL +A A + FTTTL
Sbjct: 83 KVNFIEGDYETKRFYECIQGFEKEREGGERCFKCYELRLLEAAKLAKNENYDYFTTTLSI 142
Query: 117 SPKKDPNQLIAKGQSIAQRHNLEFVVFRNDNFEHFKSELDLNLQALARENELYRQNYCGC 176
SP K+ +L G+ +++ + ++++ +K ++ L+ +LYRQ+YCGC
Sbjct: 143 SPYKNAQKLNEIGERLSKEYKVKYLYSDFKKKNGYKRSIE-----LSNIYKLYRQDYCGC 197
Query: 177 QFALKIQKESQ 187
F+ + E +
Sbjct: 198 IFSKNERNEEK 208
>ref|NP_284174.1| (NC_003116) hypothetical protein NMA1447 [Neisseria meningitidis
Z2491]
pir||F81835 hypothetical protein NMA1447 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB84683.1| (AL162756) hypothetical protein NMA1447 [Neisseria meningitidis
Z2491]
Length = 241
Score = 100 bits (249), Expect = 3e-20
Identities = 73/220 (33%), Positives = 112/220 (50%), Gaps = 21/220 (9%)
Query: 1 MLIHICCSVDNLYFLKKAKEAF--AGEKIVGFFYNPNIHPYSEYLLRLEDVKRTCEMLGI 58
+L+H CC+ + + EA +G +FYNPNIHP+ EY+LR E+ R E GI
Sbjct: 26 VLLHSCCAPCS----GEVMEAMLASGIDYTIYFYNPNIHPHKEYMLRKEENVRFAEKFGI 81
Query: 59 ELLEGDYELE----KFLDKAKGKELLGEKSERCFECFDLRLEASALKAFELGEEKFTTTL 114
++ D + E ++ KAKG E E+ RC CFD+R E +A A E G FT++L
Sbjct: 82 PFIDKDDDYENDRKEWFAKAKGMEFEPERGIRCTMCFDMRFEKAAQYAHEHGFPVFTSSL 141
Query: 115 LTSPKKDPNQLIAKGQSIAQRHNLEFVVFRNDNFEHFKSELDLNLQALARENELYRQNYC 174
S K+ NQ+ G+ A + + VV+ + N+ K + +++ Y+Q YC
Sbjct: 142 GISRWKNMNQINDCGRRAAAPY--DDVVYWDFNWR--KGGGSARMIEISKRENFYQQEYC 197
Query: 175 GCQFALK---IQKESQNRSPFEL----YSPLKRQILPASI 207
GC ++L+ ++SQ R P +L Y Q PA I
Sbjct: 198 GCAYSLRDSNAHRKSQGRIPIKLGVLYYGDESTQYEPAPI 237
>ref|NP_221199.1| (NC_000963) unknown [Rickettsia prowazekii]
pir||C71647 hypothetical protein RP851 - Rickettsia prowazekii
emb|CAA15275.1| (AJ235273) unknown [Rickettsia prowazekii]
Length = 209
Score = 97.1 bits (240), Expect = 3e-19
Identities = 58/181 (32%), Positives = 97/181 (53%), Gaps = 6/181 (3%)
Query: 1 MLIHICCSVDNLYFLKKAKEAFAGEKIVGFFYNPNIHPYSEYLLRLEDVKRTCEMLGIEL 60
+L+H CC+ ++K ++ + FFYNPNIHP EY LR + + + IE
Sbjct: 14 VLLHCCCAPCVGPIMEKMIDSRIEYTL--FFYNPNIHPKKEYELRKNENIKFAKKHNIEF 71
Query: 61 LEGDYELEKFLDKAKGKELLGEKSERCFECFDLRLEASALKAFELGEEKFTTTLLTSPKK 120
++ DY+ + + +AKG E E+ +RC CFD+R E +AL A+E G + T++L S K
Sbjct: 72 IDADYDPQNWFRRAKGMEFEQERGKRCTMCFDMRFERTALYAYENGFKVITSSLGISRWK 131
Query: 121 DPNQLIAKGQSIAQRHNLEFVVFRNDNFEHFKSELDLNLQALARENELYRQNYCGCQFAL 180
D Q+ G A + + V + N+ K+ + +A+E Y+Q +CGC ++L
Sbjct: 132 DITQINESGIRAASHY--DGVTYWTYNWR--KNGGASRIYEIAKEEHFYKQEFCGCIYSL 187
Query: 181 K 181
+
Sbjct: 188 R 188
>ref|NP_274073.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||B81129 conserved hypothetical protein NMB1039 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF41438.1| (AE002454) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 241
Score = 97.1 bits (240), Expect = 3e-19
Identities = 72/220 (32%), Positives = 110/220 (49%), Gaps = 21/220 (9%)
Query: 1 MLIHICCSVDNLYFLKKAKEAF--AGEKIVGFFYNPNIHPYSEYLLRLEDVKRTCEMLGI 58
+L+H CC+ + + EA +G +FYNPNIHP+ EY+LR E+ R E GI
Sbjct: 26 VLLHSCCAPCS----GEVMEAMLASGIDYTIYFYNPNIHPHKEYMLRKEENVRFAEKFGI 81
Query: 59 ELLEGDYELE----KFLDKAKGKELLGEKSERCFECFDLRLEASALKAFELGEEKFTTTL 114
++ D + E ++ KAKG E E+ RC CFD+R E +A A E G FT++L
Sbjct: 82 PFIDKDDDYENDRKEWFAKAKGMEFEPERGIRCTMCFDMRFEKAAQYAHEHGFPVFTSSL 141
Query: 115 LTSPKKDPNQLIAKGQSIAQRHNLEFVVFRNDNFEHFKSELDLNLQALARENELYRQNYC 174
S K+ Q+ G A + + VV+ + N+ K + +++ Y+Q YC
Sbjct: 142 GISRWKNMAQINDCGHRAAAPY--DDVVYWDFNWR--KGGGSARMIEISKRENFYQQEYC 197
Query: 175 GCQFALK---IQKESQNRSPFEL----YSPLKRQILPASI 207
GC ++L+ ++SQ R P +L Y Q PA I
Sbjct: 198 GCAYSLRDSNAHRKSQGRIPIKLGVLYYGDESTQYEPAPI 237
>ref|NP_299552.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||G82578 conserved hypothetical protein XF2273 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF85072.1|AE004039_7 (AE004039) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 236
Score = 93.6 bits (231), Expect = 3e-18
Identities = 58/181 (32%), Positives = 95/181 (52%), Gaps = 6/181 (3%)
Query: 1 MLIHICCSVDNLYFLKKAKEAFAGEKIVGFFYNPNIHPYSEYLLRLEDVKRTCEMLGIEL 60
+L+H CC+ + ++ E+ G FFYNPNIHP EY LR ++ R E G+
Sbjct: 19 LLLHSCCAPCSGELMEAFVES--GIDYTIFFYNPNIHPLKEYELRKQENIRFAEKSGVPF 76
Query: 61 LEGDYELEKFLDKAKGKELLGEKSERCFECFDLRLEASALKAFELGEEKFTTTLLTSPKK 120
++ DY+ + + +AKG E E+ RC CFD+R E +AL A E G T++L S K
Sbjct: 77 IDADYDTDAWFARAKGMENEPERGIRCTMCFDMRFERTALYAHEHGFPVITSSLGISRWK 136
Query: 121 DPNQLIAKGQSIAQRHNLEFVVFRNDNFEHFKSELDLNLQALARENELYRQNYCGCQFAL 180
+ Q+ G A + +V+ + N+ K+ + +++ Y+Q YCGC ++L
Sbjct: 137 NMEQINDCGHRAAAPY--PGLVYWDYNWR--KNGGSQRMIEISKREHFYQQEYCGCVYSL 192
Query: 181 K 181
+
Sbjct: 193 R 193
>ref|NP_640688.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM35224.1| (AE011659) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 218
Score = 92.4 bits (228), Expect = 7e-18
Identities = 60/183 (32%), Positives = 96/183 (51%), Gaps = 10/183 (5%)
Query: 1 MLIHICCSVDNLYFLKKAKEAF--AGEKIVGFFYNPNIHPYSEYLLRLEDVKRTCEMLGI 58
+L+H CC+ + + EA +G FFYNPNIHP EY LR ++ R E G+
Sbjct: 19 VLLHSCCAPCS----GEVMEAMLASGIDYTIFFYNPNIHPRKEYELRKDENVRFAEQFGV 74
Query: 59 ELLEGDYELEKFLDKAKGKELLGEKSERCFECFDLRLEASALKAFELGEEKFTTTLLTSP 118
++ DY+ + + ++A+G E E+ RC CFD+R E +AL A E G T++L S
Sbjct: 75 PFIDADYDRDNWFERARGMENEPERGVRCTMCFDMRFERTALYAHEHGFPVITSSLGISR 134
Query: 119 KKDPNQLIAKGQSIAQRHNLEFVVFRNDNFEHFKSELDLNLQALARENELYRQNYCGCQF 178
K+ Q+ G A ++ +++ N+ + +Q REN Y+Q YCGC +
Sbjct: 135 WKNMQQINDCGMRAAAKY--PGLMYWEYNWRKGGGASRM-IQISKREN-FYQQEYCGCVY 190
Query: 179 ALK 181
+L+
Sbjct: 191 SLR 193
>ref|NP_267523.1| (NC_002662) conserved hypothetical protein [Lactococcus lactis
subsp. lactis]
gb|AAK05465.1|AE006369_1 (AE006369) conserved hypothetical protein [Lactococcus lactis
subsp. lactis]
Length = 241
Score = 88.2 bits (217), Expect = 1e-16
Identities = 61/200 (30%), Positives = 102/200 (50%), Gaps = 19/200 (9%)
Query: 1 MLIHICCSVDNLYFLKKAKEAFAGEKIVGFFYNPNIHPYSEY----LLRLEDVKRTCEML 56
+L+H CC+ + Y L+ ++ + +F N NIHP +EY +++ + VK E
Sbjct: 40 ILLHSCCAPCSTYSLEYLTQS---ADVTIYFANSNIHPSTEYTRRKMVQEQFVKDFNERT 96
Query: 57 G--IELLEGDYELEKFLDKAKGKELLGEKS--ERCFECFDLRLEASALKAFELGEEKFTT 112
G ++ + +YE FL + K L E +RC CF++RL+ A KA ELG + F +
Sbjct: 97 GNNVQFIAAEYEPNVFLQMVRQKHLENEPEGGKRCTSCFEMRLDIVAEKALELGFDYFGS 156
Query: 113 TLLTSPKKDPNQLIAKGQSIAQRHNLEFVVFRNDNFEHFKSELDLNLQALARENELYRQN 172
L SPKK+ + G I + +++ ++ +K ++ + +E ++YRQ
Sbjct: 157 ALTLSPKKNSQLINEIGLDIQKIYDVNYLPSDFKKNNGYKRSVE-----MCKEYDVYRQC 211
Query: 173 YCGCQFALK---IQKESQNR 189
YCGC FA K I + QNR
Sbjct: 212 YCGCIFAAKAQGIDLKEQNR 231
>ref|NP_268593.1| (NC_002737) conserved hypothetical protein [Streptococcus pyogenes]
[Streptococcus pyogenes M1 GAS]
gb|AAK33314.1| (AE006490) conserved hypothetical protein [Streptococcus pyogenes
M1 GAS]
Length = 255
Score = 87.0 bits (214), Expect = 3e-16
Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 18/191 (9%)
Query: 1 MLIHICCSVDNLYFLKKAKEAFAGEKIVGFFYNPNIHPYSEYLLRLEDVKRTCEMLG--- 57
+L+H+CC+ + Y L+ + FA I +F N NIHP EY R ++
Sbjct: 39 ILMHVCCAPCSTYTLEYLTQ-FAD--ITVYFANSNIHPKDEYHRRAYVTQQFVSEFNAKT 95
Query: 58 ---IELLEGDYELEKFLDKAKGKELLGEKSERCFECFDLRLEASALKAFELGEEKFTTTL 114
++ LE DY +++ + +G E E +RC CFD RL+ +A KA ELG + F + L
Sbjct: 96 GNTVQFLEADYVPNEYVRQVRGLEEEPEGGDRCRVCFDYRLDKTAQKAVELGFDYFASAL 155
Query: 115 LTSPKKDPNQLIAKGQSIAQRHNLEFVV--FRNDNFEHFKSELDLNLQALARENELYRQN 172
SP K+ + G + + + +++ F+ +N E + E ++YRQ
Sbjct: 156 TISPHKNSQTINDVGIDVQKVYTTKYLPSDFKKNNGYRRSVE-------MCEEYDIYRQC 208
Query: 173 YCGCQFALKIQ 183
YCGC +A K+Q
Sbjct: 209 YCGCVYAAKMQ 219
>ref|NP_606506.1| (NC_003485) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
gb|AAL97005.1| (AE009970) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
Length = 255
Score = 87.0 bits (214), Expect = 3e-16
Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 18/191 (9%)
Query: 1 MLIHICCSVDNLYFLKKAKEAFAGEKIVGFFYNPNIHPYSEYLLRLEDVKRTCEMLG--- 57
+L+H+CC+ + Y L+ + FA I +F N NIHP EY R ++
Sbjct: 39 ILMHVCCAPCSTYTLEYLTQ-FAD--ITVYFANSNIHPKDEYHRRAYVTQQFVSEFNAKT 95
Query: 58 ---IELLEGDYELEKFLDKAKGKELLGEKSERCFECFDLRLEASALKAFELGEEKFTTTL 114
++ LE DY +++ + +G E E +RC CFD RL+ +A KA ELG + F + L
Sbjct: 96 GNTVQFLEADYVPNEYVRQVRGLEEEPEGGDRCRVCFDYRLDKTAQKAVELGFDYFASAL 155
Query: 115 LTSPKKDPNQLIAKGQSIAQRHNLEFVV--FRNDNFEHFKSELDLNLQALARENELYRQN 172
SP K+ + G + + + +++ F+ +N E + E ++YRQ
Sbjct: 156 TISPHKNSQTINDVGIDVQKVYTTKYLPSDFKKNNGYRRSVE-------MCEEYDIYRQC 208
Query: 173 YCGCQFALKIQ 183
YCGC +A K+Q
Sbjct: 209 YCGCVYAAKMQ 219
>ref|NP_373115.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_375703.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
ref|NP_647328.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB43682.1| (AP003137) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB58753.1| (AP003365) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
dbj|BAB96376.1| (AP004830) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 240
Score = 83.2 bits (204), Expect = 4e-15
Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 18/188 (9%)
Query: 1 MLIHICCSVDNLYFLKKAKEAFAGEKIVGFFYNPNIHPYSEYLLR-------LEDVKRTC 53
+L+H CC+ + Y L+ + I +F N NIHP +EYL R +ED R
Sbjct: 38 ILLHSCCAPCSTYTLEFLTQY---ADIAIYFANSNIHPKNEYLRRAKVQEQFVEDFNRKT 94
Query: 54 EMLGIELLEGDYELEKFLDKAKGKELLGEKSE--RCFECFDLRLEASALKAFELGEEKFT 111
++ +E YE KF+ K KEL EK RC CF++RL+ A A E G + F
Sbjct: 95 GA-NVKYIEAPYEPHKFVKMVKDKELADEKEGGLRCTACFEMRLDIVAKAAVEHGYDYFG 153
Query: 112 TTLLTSPKKDPNQLIAKGQSIAQRHNLEFVVFRNDNFEHFKSELDLNLQALARENELYRQ 171
+ + SPKK+ + G + + +++ ++ + ++ ++ + + ++RQ
Sbjct: 154 SAITLSPKKNAQLINELGMDVQKIYDVNYLPSDFKKSKGYERSIE-----MCNDYNIFRQ 208
Query: 172 NYCGCQFA 179
YCGC FA
Sbjct: 209 CYCGCVFA 216
>gb|EAA02042.1| (AAAB01002263) agCP9186 [Anopheles gambiae str. PEST]
Length = 157
Score = 65.5 bits (158), Expect = 1e-09
Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 4/120 (3%)
Query: 62 EGDYELEKFLDKAKGKELLGEKSERCFECFDLRLEASALKAFELGEEKFTTTLLTSPKKD 121
+ DY+++ + +AKG E EK RC CFD+R E +AL A+E G + +++L S K+
Sbjct: 14 DADYDVDNWFSRAKGMEWEPEKGVRCTMCFDMRFERTALYAYENGFDVISSSLGISRWKN 73
Query: 122 PNQLIAKGQSIAQRHNLEFVVFRNDNFEHFKSELDLNLQALARENELYRQNYCGCQFALK 181
Q+ G A+ + E + + N+ K + ++++ + Y Q YCGC ++L+
Sbjct: 74 MEQINDCGLRAAEHY--EGITYWTYNWR--KKGGSARMLEISKQEQFYMQEYCGCAYSLR 129
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.137 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 216,554,148
Number of Sequences: 1026957
Number of extensions: 8571517
Number of successful extensions: 22030
Number of sequences better than 1.0e-02: 20
Number of HSP's better than 0.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21976
Number of HSP's gapped (non-prelim): 20
length of query: 368
length of database: 324,149,939
effective HSP length: 122
effective length of query: 246
effective length of database: 198,861,185
effective search space: 48919851510
effective search space used: 48919851510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 98 (42.4 bits)