BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645607|ref|NP_207783.1| hypothetical protein
[Helicobacter pylori 26695]
(79 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207783.1| (NC_000915) hypothetical protein [Helicoba... 157 2e-38
ref|NP_223656.1| (NC_000921) putative [Helicobacter pylori ... 148 1e-35
ref|NP_207782.1| (NC_000915) hypothetical protein [Helicoba... 42 0.002
>ref|NP_207783.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64643 hypothetical protein HP0992 - Helicobacter pylori (strain 26695)
gb|AAD08037.1| (AE000607) H. pylori predicted coding region HP0992 [Helicobacter
pylori 26695]
Length = 79
Score = 157 bits (397), Expect = 2e-38
Identities = 79/79 (100%), Positives = 79/79 (100%)
Query: 1 MIKLNGLNKTLKTSLLAEVLLGATAPLMAKPLLSDEDLLKRVKLHNIKEDTLTSCNAKVD 60
MIKLNGLNKTLKTSLLAEVLLGATAPLMAKPLLSDEDLLKRVKLHNIKEDTLTSCNAKVD
Sbjct: 1 MIKLNGLNKTLKTSLLAEVLLGATAPLMAKPLLSDEDLLKRVKLHNIKEDTLTSCNAKVD 60
Query: 61 GSQYLNSGWNLSKEFPQVI 79
GSQYLNSGWNLSKEFPQVI
Sbjct: 61 GSQYLNSGWNLSKEFPQVI 79
>ref|NP_223656.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71869 hypothetical protein jhp0939 - Helicobacter pylori (strain J99)
gb|AAD06520.1| (AE001523) putative [Helicobacter pylori J99]
Length = 337
Score = 148 bits (373), Expect = 1e-35
Identities = 74/77 (96%), Positives = 75/77 (97%)
Query: 1 MIKLNGLNKTLKTSLLAEVLLGATAPLMAKPLLSDEDLLKRVKLHNIKEDTLTSCNAKVD 60
MI+L GLNKTLKTSLLA VLLGATAPLMAKPLLSDEDLLKRVKLHNIKEDTLTSCNAKVD
Sbjct: 1 MIRLKGLNKTLKTSLLAGVLLGATAPLMAKPLLSDEDLLKRVKLHNIKEDTLTSCNAKVD 60
Query: 61 GSQYLNSGWNLSKEFPQ 77
GSQYLNSGWNLSKEFPQ
Sbjct: 61 GSQYLNSGWNLSKEFPQ 77
Score = 41.6 bits (96), Expect = 0.002
Identities = 17/41 (41%), Positives = 30/41 (72%), Gaps = 1/41 (2%)
Query: 30 KPLLSDEDLLKRVKLHNIKEDTLTSCNAKVDGSQY-LNSGW 69
KPL+S+ +LL ++L NIK++ + CN ++DGS+Y ++ W
Sbjct: 249 KPLMSNTELLNMIELTNIKKEYVMGCNMEIDGSKYPIHKDW 289
>ref|NP_207782.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64643 hypothetical protein HP0991 - Helicobacter pylori (strain 26695)
gb|AAD08036.1| (AE000607) H. pylori predicted coding region HP0991 [Helicobacter
pylori 26695]
Length = 209
Score = 41.6 bits (96), Expect = 0.002
Identities = 17/41 (41%), Positives = 30/41 (72%), Gaps = 1/41 (2%)
Query: 30 KPLLSDEDLLKRVKLHNIKEDTLTSCNAKVDGSQY-LNSGW 69
KPL+S+ +LL ++L NIK++ + CN ++DGS+Y ++ W
Sbjct: 121 KPLMSNTELLNMIELTNIKKEYVMGCNMEIDGSKYPIHKDW 161
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.314 0.132 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,727,877
Number of Sequences: 1026957
Number of extensions: 1402805
Number of successful extensions: 3064
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3060
Number of HSP's gapped (non-prelim): 4
length of query: 79
length of database: 324,149,939
effective HSP length: 55
effective length of query: 24
effective length of database: 267,667,304
effective search space: 6424015296
effective search space used: 6424015296
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 90 (39.3 bits)