BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645608|ref|NP_207784.1| hypothetical protein
[Helicobacter pylori 26695]
         (83 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207784.1|  (NC_000915) hypothetical protein [Helicoba...   170  3e-42
gb|AAM22675.1|AF469113_15  (AF469113) unknown [Helicobacter ...   146  6e-35

>ref|NP_207784.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64644 hypothetical protein HP0993 - Helicobacter pylori (strain 26695)
 gb|AAD08038.1| (AE000607) H. pylori predicted coding region HP0993 [Helicobacter
          pylori 26695]
          Length = 83

 Score =  170 bits (431), Expect = 3e-42
 Identities = 83/83 (100%), Positives = 83/83 (100%)

Query: 1  MSFAPMLLATINNSIGNKDKHVSLEYLIGLFMDKKTTNLSNTDKYIIGTIQTEALEQEIE 60
          MSFAPMLLATINNSIGNKDKHVSLEYLIGLFMDKKTTNLSNTDKYIIGTIQTEALEQEIE
Sbjct: 1  MSFAPMLLATINNSIGNKDKHVSLEYLIGLFMDKKTTNLSNTDKYIIGTIQTEALEQEIE 60

Query: 61 WFSQDYHIPMENILHVLSINPYQ 83
          WFSQDYHIPMENILHVLSINPYQ
Sbjct: 61 WFSQDYHIPMENILHVLSINPYQ 83



>gb|AAM22675.1|AF469113_15 (AF469113) unknown [Helicobacter pylori]
          Length = 83

 Score =  146 bits (368), Expect = 6e-35
 Identities = 71/83 (85%), Positives = 75/83 (89%)

Query: 1  MSFAPMLLATINNSIGNKDKHVSLEYLIGLFMDKKTTNLSNTDKYIIGTIQTEALEQEIE 60
          M F+PMLLATINNSIGNK+ HVSLEYLI LFM KKTTNLSN DKYIIGTIQ E L+QEIE
Sbjct: 1  MPFSPMLLATINNSIGNKNNHVSLEYLIDLFMKKKTTNLSNIDKYIIGTIQQETLDQEIE 60

Query: 61 WFSQDYHIPMENILHVLSINPYQ 83
          WFSQDYHIPMENI +VLSINPYQ
Sbjct: 61 WFSQDYHIPMENIQYVLSINPYQ 83



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.317    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,736,251
Number of Sequences: 1026957
Number of extensions: 1705870
Number of successful extensions: 4056
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4054
Number of HSP's gapped (non-prelim): 2
length of query: 83
length of database: 324,149,939
effective HSP length: 59
effective length of query: 24
effective length of database: 263,559,476
effective search space: 6325427424
effective search space used: 6325427424
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 90 (39.3 bits)