BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645609|ref|NP_207785.1| hypothetical protein
[Helicobacter pylori 26695]
(267 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207785.1| (NC_000915) hypothetical protein [Helicoba... 538 e-152
ref|NP_223657.1| (NC_000921) putative [Helicobacter pylori ... 52 5e-06
ref|NP_064955.1| (NC_002520) Hypothetical protein [Amsacta ... 43 0.004
>ref|NP_207785.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64644 hypothetical protein HP0994 - Helicobacter pylori (strain 26695)
gb|AAD08039.1| (AE000607) H. pylori predicted coding region HP0994 [Helicobacter
pylori 26695]
Length = 267
Score = 538 bits (1385), Expect = e-152
Identities = 267/267 (100%), Positives = 267/267 (100%)
Query: 1 MSFLSIPINEKSLSFIKNNFQAQIQALEQFYPIIKNALNLGLNPSSIKFGGGTALSMYYF 60
MSFLSIPINEKSLSFIKNNFQAQIQALEQFYPIIKNALNLGLNPSSIKFGGGTALSMYYF
Sbjct: 1 MSFLSIPINEKSLSFIKNNFQAQIQALEQFYPIIKNALNLGLNPSSIKFGGGTALSMYYF 60
Query: 61 QHRLSFDMDLFVNDAQCLGFFSPKLWIDNCSHFDSTRYIDQHNHIGVTNKDNIKIDVLVD 120
QHRLSFDMDLFVNDAQCLGFFSPKLWIDNCSHFDSTRYIDQHNHIGVTNKDNIKIDVLVD
Sbjct: 61 QHRLSFDMDLFVNDAQCLGFFSPKLWIDNCSHFDSTRYIDQHNHIGVTNKDNIKIDVLVD 120
Query: 121 YASNEGYVDNSKKIFAFDIYIESLENIIAKKITFRKTDNKTRDIFDIAVALHNDNNLFDK 180
YASNEGYVDNSKKIFAFDIYIESLENIIAKKITFRKTDNKTRDIFDIAVALHNDNNLFDK
Sbjct: 121 YASNEGYVDNSKKIFAFDIYIESLENIIAKKITFRKTDNKTRDIFDIAVALHNDNNLFDK 180
Query: 181 LLSSQKITKQDLLTLQNSLQELDKKRYSIEIDMVEPISHYKDLSLSAYDFLIDKIDQIKT 240
LLSSQKITKQDLLTLQNSLQELDKKRYSIEIDMVEPISHYKDLSLSAYDFLIDKIDQIKT
Sbjct: 181 LLSSQKITKQDLLTLQNSLQELDKKRYSIEIDMVEPISHYKDLSLSAYDFLIDKIDQIKT 240
Query: 241 ATYSNSHDNADDLDNSNEYTPTPKRRR 267
ATYSNSHDNADDLDNSNEYTPTPKRRR
Sbjct: 241 ATYSNSHDNADDLDNSNEYTPTPKRRR 267
>ref|NP_223657.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71869 hypothetical protein jhp0940 - Helicobacter pylori (strain J99)
gb|AAD06516.1| (AE001523) putative [Helicobacter pylori J99]
Length = 325
Score = 52.4 bits (124), Expect = 5e-06
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 30/145 (20%)
Query: 145 ENIIAKKITFRKTDNKTRDIFDIAVALHNDNNLFDKLLSSQKITKQDLLTLQNSLQELDK 204
++++ +K+ D I++ ++ D+N +KI D LT N+ LD
Sbjct: 189 DDVVCQKV-LSNIDELNARIYNFPQSILKDDN-------DKKINYYDFLTQTNNKDCLDA 240
Query: 205 K-RYSIEIDMVEP---ISHYKDLSLSAYDFLIDKIDQIKTA------------------T 242
R IDM + I + +S +FL +D+ K+
Sbjct: 241 LLRIYPRIDMNKIHSIIDNTPFMSEIHKEFLHTMLDERKSKIIDVAHTRAIELSLQHKQA 300
Query: 243 YSNSHDNADDLDNSNEYTPTPKRRR 267
+SN +DNADDLDNSNEYTPTPKRRR
Sbjct: 301 HSNPYDNADDLDNSNEYTPTPKRRR 325
>ref|NP_064955.1| (NC_002520) Hypothetical protein [Amsacta moorei entomopoxvirus]
gb|AAG02879.1|AF250284_173 (AF250284) AMV173 [Amsacta moorei entomopoxvirus]
Length = 440
Score = 42.7 bits (99), Expect = 0.004
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 19/135 (14%)
Query: 121 YASNEGYVDN----SKKIFAFDIYIESLENIIAKKITFRKTDNKTRDIFDIAVALHNDNN 176
+ SN+ +DN S KIF + I + N + K + T+D F HND
Sbjct: 319 FYSNKLVIDNNIVISSKIFIHNFKIYNTTNELEKICIYNNIYELTKDYFKNINITHND-- 376
Query: 177 LFDKLLSSQKITKQDLLTLQNSLQELDKK--RYSIEIDMVEPISHYKDLSLSAYDFLIDK 234
D S +KI K + + L + +L K +Y ++I IS K + L+ YD L D
Sbjct: 377 --DLYTSIEKIKKNNNIELFKIMNKLINKTVKYHMQI-----ISENKPIDLNKYDILFDF 429
Query: 235 IDQIKTATYSNSHDN 249
+ I Y NS N
Sbjct: 430 LTHI----YKNSQSN 440
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.136 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,895,516
Number of Sequences: 1026957
Number of extensions: 6900787
Number of successful extensions: 24373
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 24371
Number of HSP's gapped (non-prelim): 4
length of query: 267
length of database: 324,149,939
effective HSP length: 119
effective length of query: 148
effective length of database: 201,942,056
effective search space: 29887424288
effective search space used: 29887424288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 96 (41.6 bits)