BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645614|ref|NP_207790.1| hypothetical protein
[Helicobacter pylori 26695]
         (61 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G64644  hypothetical protein HP0999 - Helicobacter pylo...   125  1e-28
ref|NP_207790.1|  (NC_000915) hypothetical protein [Helicoba...   125  1e-28
ref|NP_223646.1|  (NC_000921) putative [Helicobacter pylori ...    65  2e-10

>pir||G64644 hypothetical protein HP0999 - Helicobacter pylori (strain 26695)
          Length = 75

 Score =  125 bits (314), Expect = 1e-28
 Identities = 61/61 (100%), Positives = 61/61 (100%)

Query: 1  MSKDRDYKPVFNPKSKEVLEKMNAEKRASLVDEREEVKEQANQEAYRPMKKAANDDYDMG 60
          MSKDRDYKPVFNPKSKEVLEKMNAEKRASLVDEREEVKEQANQEAYRPMKKAANDDYDMG
Sbjct: 15 MSKDRDYKPVFNPKSKEVLEKMNAEKRASLVDEREEVKEQANQEAYRPMKKAANDDYDMG 74

Query: 61 M 61
          M
Sbjct: 75 M 75



>ref|NP_207790.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 gb|AAD08047.1| (AE000608) H. pylori predicted coding region HP0999 [Helicobacter
          pylori 26695]
          Length = 61

 Score =  125 bits (314), Expect = 1e-28
 Identities = 61/61 (100%), Positives = 61/61 (100%)

Query: 1  MSKDRDYKPVFNPKSKEVLEKMNAEKRASLVDEREEVKEQANQEAYRPMKKAANDDYDMG 60
          MSKDRDYKPVFNPKSKEVLEKMNAEKRASLVDEREEVKEQANQEAYRPMKKAANDDYDMG
Sbjct: 1  MSKDRDYKPVFNPKSKEVLEKMNAEKRASLVDEREEVKEQANQEAYRPMKKAANDDYDMG 60

Query: 61 M 61
          M
Sbjct: 61 M 61



>ref|NP_223646.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||E71870 hypothetical protein jhp0929 - Helicobacter pylori (strain J99)
 gb|AAD06507.1| (AE001522) putative [Helicobacter pylori J99]
          Length = 150

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 31/52 (59%), Positives = 41/52 (78%)

Query: 1   MSKDRDYKPVFNPKSKEVLEKMNAEKRASLVDEREEVKEQANQEAYRPMKKA 52
           MSKDR+YKP FNPKSKEVL+ +NAEKRASL +EREE   + N +++  ++ A
Sbjct: 62  MSKDRNYKPAFNPKSKEVLKNLNAEKRASLENEREEQGVKGNTKSHDEIEPA 113



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.306    0.124    0.326 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,833,471
Number of Sequences: 1026957
Number of extensions: 1066550
Number of successful extensions: 5079
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5076
Number of HSP's gapped (non-prelim): 3
length of query: 61
length of database: 324,149,939
effective HSP length: 37
effective length of query: 24
effective length of database: 286,152,530
effective search space: 6867660720
effective search space used: 6867660720
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 91 (39.7 bits)