BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645616|ref|NP_207792.1| hypothetical protein
[Helicobacter pylori 26695]
         (94 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207792.1|  (NC_000915) hypothetical protein [Helicoba...   190  3e-48
ref|NP_223651.1|  (NC_000921) putative [Helicobacter pylori ...    54  4e-07

>ref|NP_207792.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64645 hypothetical protein HP1001 - Helicobacter pylori (strain 26695)
 gb|AAD08048.1| (AE000608) H. pylori predicted coding region HP1001 [Helicobacter
          pylori 26695]
          Length = 94

 Score =  190 bits (482), Expect = 3e-48
 Identities = 94/94 (100%), Positives = 94/94 (100%)

Query: 1  MEFKNTKKDRLSDLENRFENANKHETNKHEKEDRKKAHTLYISEKVMNSVEEYLNEFGAF 60
          MEFKNTKKDRLSDLENRFENANKHETNKHEKEDRKKAHTLYISEKVMNSVEEYLNEFGAF
Sbjct: 1  MEFKNTKKDRLSDLENRFENANKHETNKHEKEDRKKAHTLYISEKVMNSVEEYLNEFGAF 60

Query: 61 RENKSVFVQDAIIFYLEYKKKEMKQMLLDKASKL 94
          RENKSVFVQDAIIFYLEYKKKEMKQMLLDKASKL
Sbjct: 61 RENKSVFVQDAIIFYLEYKKKEMKQMLLDKASKL 94



>ref|NP_223651.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||B71869 hypothetical protein jhp0934 - Helicobacter pylori (strain J99)
 gb|AAD06512.1| (AE001523) putative [Helicobacter pylori J99]
          Length = 339

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 23/63 (36%), Positives = 43/63 (67%)

Query: 32  EDRKKAHTLYISEKVMNSVEEYLNEFGAFRENKSVFVQDAIIFYLEYKKKEMKQMLLDKA 91
           ED+KK+  +  S  V+  + E+L EFG+F+E +S F+++A+I +L+++K   +Q LL + 
Sbjct: 49  EDKKKSFNIAFSPCVIKELNEFLLEFGSFKETRSTFIEEALIRHLKHRKNTQEQKLLKQL 108

Query: 92  SKL 94
            +L
Sbjct: 109 ERL 111



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.312    0.129    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,786,884
Number of Sequences: 1026957
Number of extensions: 2009767
Number of successful extensions: 7724
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7720
Number of HSP's gapped (non-prelim): 4
length of query: 94
length of database: 324,149,939
effective HSP length: 70
effective length of query: 24
effective length of database: 252,262,949
effective search space: 6054310776
effective search space used: 6054310776
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 90 (39.3 bits)