BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644731|ref|NP_206901.1| hypothetical protein
[Helicobacter pylori 26695]
(253 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206901.1| (NC_000915) hypothetical protein [Helicoba... 510 e-144
ref|NP_222814.1| (NC_000921) putative [Helicobacter pylori ... 482 e-135
ref|NP_223147.1| (NC_000921) putative Outer membrane protei... 47 2e-04
ref|NP_223575.1| (NC_000921) putative Outer membrane protei... 47 2e-04
ref|NP_207715.1| (NC_000915) outer membrane protein (omp22)... 47 2e-04
ref|NP_207275.1| (NC_000915) outer membrane protein (omp12)... 47 2e-04
>ref|NP_206901.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||E64532 hypothetical protein HP0101 - Helicobacter pylori (strain 26695)
gb|AAD07180.1| (AE000532) H. pylori predicted coding region HP0101 [Helicobacter
pylori 26695]
Length = 253
Score = 510 bits (1314), Expect = e-144
Identities = 253/253 (100%), Positives = 253/253 (100%)
Query: 1 MKTLFSIYLFLSLNPLFLEANEITWSKFLENFKNKNDDDKPKPLTIDKNNEKQQILDKNQ 60
MKTLFSIYLFLSLNPLFLEANEITWSKFLENFKNKNDDDKPKPLTIDKNNEKQQILDKNQ
Sbjct: 1 MKTLFSIYLFLSLNPLFLEANEITWSKFLENFKNKNDDDKPKPLTIDKNNEKQQILDKNQ 60
Query: 61 QILKRALEKSLKFFFIFGYNYSQATFSTSNQTLTFVANSIGFNTATGLEHFLRNHPKVGF 120
QILKRALEKSLKFFFIFGYNYSQATFSTSNQTLTFVANSIGFNTATGLEHFLRNHPKVGF
Sbjct: 61 QILKRALEKSLKFFFIFGYNYSQATFSTSNQTLTFVANSIGFNTATGLEHFLRNHPKVGF 120
Query: 121 RIFSVYNYFHSVSLSQPQTLMVQNYGGALDFSWIFVDKNIYRFRSYLGIALEQGVLLVDT 180
RIFSVYNYFHSVSLSQPQTLMVQNYGGALDFSWIFVDKNIYRFRSYLGIALEQGVLLVDT
Sbjct: 121 RIFSVYNYFHSVSLSQPQTLMVQNYGGALDFSWIFVDKNIYRFRSYLGIALEQGVLLVDT 180
Query: 181 IKPGAITTIIPRTKKTFFQAPLRFGFIVDFIGYLSLQLGIEMPLVRNVFYTYNNHQERFK 240
IKPGAITTIIPRTKKTFFQAPLRFGFIVDFIGYLSLQLGIEMPLVRNVFYTYNNHQERFK
Sbjct: 181 IKPGAITTIIPRTKKTFFQAPLRFGFIVDFIGYLSLQLGIEMPLVRNVFYTYNNHQERFK 240
Query: 241 PRFNANLSLIVSF 253
PRFNANLSLIVSF
Sbjct: 241 PRFNANLSLIVSF 253
>ref|NP_222814.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71975 hypothetical protein jhp0093 - Helicobacter pylori (strain J99)
gb|AAD05674.1| (AE001448) putative [Helicobacter pylori J99]
Length = 253
Score = 482 bits (1241), Expect = e-135
Identities = 237/253 (93%), Positives = 243/253 (95%)
Query: 1 MKTLFSIYLFLSLNPLFLEANEITWSKFLENFKNKNDDDKPKPLTIDKNNEKQQILDKNQ 60
MKTLFS+YLFLSLNPLFLEA EITWS+FLENFKNKN+DDKPKPLTIDKNNEKQQILDKNQ
Sbjct: 1 MKTLFSVYLFLSLNPLFLEAKEITWSQFLENFKNKNEDDKPKPLTIDKNNEKQQILDKNQ 60
Query: 61 QILKRALEKSLKFFFIFGYNYSQATFSTSNQTLTFVANSIGFNTATGLEHFLRNHPKVGF 120
QILKRALEKSLKFFFIFGYNYSQA +ST+NQ LT ANSIGFNTATGLEHFLRNHPKVGF
Sbjct: 61 QILKRALEKSLKFFFIFGYNYSQAAYSTTNQNLTLTANSIGFNTATGLEHFLRNHPKVGF 120
Query: 121 RIFSVYNYFHSVSLSQPQTLMVQNYGGALDFSWIFVDKNIYRFRSYLGIALEQGVLLVDT 180
RIFSVYNYFHSVSLSQPQ LMVQNYGGALDFSWIFVDK YRFRSYLGIALEQGVLLVDT
Sbjct: 121 RIFSVYNYFHSVSLSQPQILMVQNYGGALDFSWIFVDKKTYRFRSYLGIALEQGVLLVDT 180
Query: 181 IKPGAITTIIPRTKKTFFQAPLRFGFIVDFIGYLSLQLGIEMPLVRNVFYTYNNHQERFK 240
IK G+ TTIIPRTKKTFFQAPLRFGFIVDFIGYLSLQLGIEMPLVRNVFYTYNNHQERFK
Sbjct: 181 IKTGSFTTIIPRTKKTFFQAPLRFGFIVDFIGYLSLQLGIEMPLVRNVFYTYNNHQERFK 240
Query: 241 PRFNANLSLIVSF 253
PRFNANLSLIVSF
Sbjct: 241 PRFNANLSLIVSF 253
>ref|NP_223147.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||E71932 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06010.1| (AE001477) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 371
Score = 47.4 bits (111), Expect = 2e-04
Identities = 61/249 (24%), Positives = 100/249 (39%), Gaps = 43/249 (17%)
Query: 46 IDKNNEKQQILDKNQQILKRALE-----KSLKFFFIFGYNYSQATFSTSNQTLTFVANSI 100
+ N + Q L+K Q+ + LE K+L+ F N ++ S+ ++ N++
Sbjct: 125 VASNPKLAQALEKMQEPITNPLELVENLKNLELQFSQSQNSMLSSLSSQIAQISNSLNAL 184
Query: 101 -------------GFNTATGLEHFLRNHPKVGFRIFSVYNY----FHSVSLSQPQTLMVQ 143
G + G +HF GFR + Y+Y F V +
Sbjct: 185 DPSSYSKNVSSMYGVGLSVGYKHFFTKKKNQGFRYYLFYDYGYTNFGFVGNGFDGLGKMN 244
Query: 144 N--YGGALDFSWIFVDKNIYRFRS---YLGIALEQG----------VLLVDTIKPGAITT 188
N YG +D+ + F+D N + S Y+G AL V +D I +T
Sbjct: 245 NHLYGLGIDYLFNFID-NAQKHSSVGFYVGFALAGSSWVGSGLGMWVSQMDFIN-NYLTD 302
Query: 189 IIPRTKKTFFQAPLRFGFIVDFIGYLSLQLGIEMPLVRNVFYTYN----NHQERFKPRFN 244
+ +FFQ PL FG V+ + ++G+++PL N FY + N FK
Sbjct: 303 YRAKMHTSFFQIPLNFGVRVNVDRHNGFEMGLKIPLAVNSFYETHGKGLNASLFFKRLVM 362
Query: 245 ANLSLIVSF 253
N+S + SF
Sbjct: 363 FNVSYVYSF 371
>ref|NP_223575.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||A71880 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06433.1| (AE001515) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 366
Score = 47.0 bits (110), Expect = 2e-04
Identities = 61/249 (24%), Positives = 100/249 (39%), Gaps = 43/249 (17%)
Query: 46 IDKNNEKQQILDKNQQILKRALE-----KSLKFFFIFGYNYSQATFSTSNQTLTFVANSI 100
+ N + Q L+K Q+ + LE K+L+ F N ++ S+ ++ N++
Sbjct: 120 VASNPKLVQALEKMQEPITNPLELVENLKNLELQFSQSQNSMLSSLSSQIAQISNSLNAL 179
Query: 101 -------------GFNTATGLEHFLRNHPKVGFRIFSVYNY----FHSVSLSQPQTLMVQ 143
G + G +HF GFR + Y+Y F V +
Sbjct: 180 DPSSYSKNVSSMYGVGLSVGYKHFFTKKKNQGFRYYLFYDYGYTNFGFVGNGFDGLGKMN 239
Query: 144 N--YGGALDFSWIFVDKNIYRFRS---YLGIALEQG----------VLLVDTIKPGAITT 188
N YG +D+ + F+D N + S Y+G AL V +D I +T
Sbjct: 240 NHLYGLGIDYLFNFID-NAQKHSSVGFYVGFALAGSSWVGSGLGMWVSQMDFIN-NYLTD 297
Query: 189 IIPRTKKTFFQAPLRFGFIVDFIGYLSLQLGIEMPLVRNVFYTYN----NHQERFKPRFN 244
+ +FFQ PL FG V+ + ++G+++PL N FY + N FK
Sbjct: 298 YRAKMHTSFFQIPLNFGVRVNVDRHNGFEMGLKIPLAVNSFYETHGKGLNASLFFKRLVM 357
Query: 245 ANLSLIVSF 253
N+S + SF
Sbjct: 358 FNVSYVYSF 366
>ref|NP_207715.1| (NC_000915) outer membrane protein (omp22) [Helicobacter pylori
26695]
pir||C64635 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD07978.1| (AE000602) outer membrane protein (omp22) [Helicobacter pylori
26695]
Length = 369
Score = 47.0 bits (110), Expect = 2e-04
Identities = 60/249 (24%), Positives = 99/249 (39%), Gaps = 43/249 (17%)
Query: 46 IDKNNEKQQILDKNQQILKRALE-----KSLKFFFIFGYNYSQATFSTSNQTLTFVANSI 100
+ N + Q L+K Q+ + LE ++L+ F N ++ S+ ++ N++
Sbjct: 123 VSSNPQLVQALEKMQEPITNPLEFEENLRNLEVQFAQSQNRMLSSLSSQIAAISNSLNAL 182
Query: 101 -------------GFNTATGLEHFLRNHPKVGFRIFSVYNY----FHSVSLSQPQTLMVQ 143
G + + G +HF G R + Y+Y F V +
Sbjct: 183 DPNSYSKNISSMYGVSLSVGYKHFFTKKKNQGLRYYLFYDYGYTNFGFVGNGFDGLGKMN 242
Query: 144 N--YGGALDFSWIFVDKNIYRFRS---YLGIAL----------EQGVLLVDTIKPGAITT 188
N YG +D+ + F+D N + S YLG AL V D I +T
Sbjct: 243 NHLYGLGIDYLYNFID-NAKKHSSVGFYLGFALAGSSWVGSGLSMWVSQTDFIN-NYLTG 300
Query: 189 IIPRTKKTFFQAPLRFGFIVDFIGYLSLQLGIEMPLVRNVFYTYN----NHQERFKPRFN 244
+ +FFQ PL FG V+ + ++G+++PL N FY + N FK
Sbjct: 301 YQAKMHTSFFQIPLNFGVRVNVNRHNGFEMGLKIPLAMNSFYETHGKGLNTSLFFKRLVM 360
Query: 245 ANLSLIVSF 253
N+S + SF
Sbjct: 361 FNVSYVYSF 369
>ref|NP_207275.1| (NC_000915) outer membrane protein (omp12) [Helicobacter pylori
26695]
pir||E64579 outer membrane protein - Helicobacter pylori (strain 26695)
gb|AAD07548.1| (AE000562) outer membrane protein (omp12) [Helicobacter pylori
26695]
Length = 367
Score = 47.0 bits (110), Expect = 2e-04
Identities = 60/249 (24%), Positives = 99/249 (39%), Gaps = 43/249 (17%)
Query: 46 IDKNNEKQQILDKNQQILKRALE-----KSLKFFFIFGYNYSQATFSTSNQTLTFVANSI 100
+ N + Q L+K Q+ + LE ++L+ F N ++ S+ ++ N++
Sbjct: 121 VSSNPQLVQALEKMQEPITNPLEFEENLRNLEVQFAQSQNRMLSSLSSQIAAISNSLNAL 180
Query: 101 -------------GFNTATGLEHFLRNHPKVGFRIFSVYNY----FHSVSLSQPQTLMVQ 143
G + + G +HF G R + Y+Y F V +
Sbjct: 181 DPNSYSKNISSMYGVSLSVGYKHFFTKKKNQGLRYYLFYDYGYTNFGFVGNGFDGLGKMN 240
Query: 144 N--YGGALDFSWIFVDKNIYRFRS---YLGIAL----------EQGVLLVDTIKPGAITT 188
N YG +D+ + F+D N + S YLG AL V D I +T
Sbjct: 241 NHLYGLGIDYLYNFID-NAKKHSSVGFYLGFALAGSSWVGSGLSMWVSQTDFIN-NYLTG 298
Query: 189 IIPRTKKTFFQAPLRFGFIVDFIGYLSLQLGIEMPLVRNVFYTYN----NHQERFKPRFN 244
+ +FFQ PL FG V+ + ++G+++PL N FY + N FK
Sbjct: 299 YQAKMHTSFFQIPLNFGVRVNVNRHNGFEMGLKIPLAMNSFYETHGKGLNTSLFFKRLVM 358
Query: 245 ANLSLIVSF 253
N+S + SF
Sbjct: 359 FNVSYVYSF 367
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.325 0.141 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,876,730
Number of Sequences: 1026957
Number of extensions: 6672569
Number of successful extensions: 21734
Number of sequences better than 1.0e-02: 6
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 21728
Number of HSP's gapped (non-prelim): 6
length of query: 253
length of database: 324,149,939
effective HSP length: 118
effective length of query: 135
effective length of database: 202,969,013
effective search space: 27400816755
effective search space used: 27400816755
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 96 (41.6 bits)