BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645617|ref|NP_207793.1| hypothetical protein
[Helicobacter pylori 26695]
         (394 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207793.1|  (NC_000915) hypothetical protein [Helicoba...   803  0.0

>ref|NP_207793.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||B64645 hypothetical protein HP1002 - Helicobacter pylori (strain 26695)
 gb|AAD08049.1| (AE000608) H. pylori predicted coding region HP1002 [Helicobacter
           pylori 26695]
          Length = 394

 Score =  803 bits (2075), Expect = 0.0
 Identities = 394/394 (100%), Positives = 394/394 (100%)

Query: 1   MKETRLLKLRALSLACLMGLGVSGCAFLDKQILNDHLTKAKNNPKYDCQKEMWSFPKKYD 60
           MKETRLLKLRALSLACLMGLGVSGCAFLDKQILNDHLTKAKNNPKYDCQKEMWSFPKKYD
Sbjct: 1   MKETRLLKLRALSLACLMGLGVSGCAFLDKQILNDHLTKAKNNPKYDCQKEMWSFPKKYD 60

Query: 61  GINQCLKAQEELIEPIITKKIDQYQCDDFTNEGLKDKCFKRNDAYLNTLLTPIIQKQERR 120
           GINQCLKAQEELIEPIITKKIDQYQCDDFTNEGLKDKCFKRNDAYLNTLLTPIIQKQERR
Sbjct: 61  GINQCLKAQEELIEPIITKKIDQYQCDDFTNEGLKDKCFKRNDAYLNTLLTPIIQKQERR 120

Query: 121 FSCSDFHNPELKEQCMDKTNAYEKQKDRQKRLINLVQLEAFEKEYAQYKPYIIPYFTKEC 180
           FSCSDFHNPELKEQCMDKTNAYEKQKDRQKRLINLVQLEAFEKEYAQYKPYIIPYFTKEC
Sbjct: 121 FSCSDFHNPELKEQCMDKTNAYEKQKDRQKRLINLVQLEAFEKEYAQYKPYIIPYFTKEC 180

Query: 181 VKNAPHLANKERLCQKEVHEKFDDPYSSSKELSVQSAISFCIKKVDAKLEKAALMNGVYI 240
           VKNAPHLANKERLCQKEVHEKFDDPYSSSKELSVQSAISFCIKKVDAKLEKAALMNGVYI
Sbjct: 181 VKNAPHLANKERLCQKEVHEKFDDPYSSSKELSVQSAISFCIKKVDAKLEKAALMNGVYI 240

Query: 241 SPYKKSTHCQRTHLENKSLKEIALNMNPKLEKQSPFIDADKMAMQSAGLLRKNKGVLIAF 300
           SPYKKSTHCQRTHLENKSLKEIALNMNPKLEKQSPFIDADKMAMQSAGLLRKNKGVLIAF
Sbjct: 241 SPYKKSTHCQRTHLENKSLKEIALNMNPKLEKQSPFIDADKMAMQSAGLLRKNKGVLIAF 300

Query: 301 ATDICMERNEHKKEEFISLKDSCTQSQAKIYNNKERFDKFIQDYQKDLKTCLLDTSNTKE 360
           ATDICMERNEHKKEEFISLKDSCTQSQAKIYNNKERFDKFIQDYQKDLKTCLLDTSNTKE
Sbjct: 301 ATDICMERNEHKKEEFISLKDSCTQSQAKIYNNKERFDKFIQDYQKDLKTCLLDTSNTKE 360

Query: 361 EVEQNFSQCQKEQLRDDNKGLGFTLEELVKKYAK 394
           EVEQNFSQCQKEQLRDDNKGLGFTLEELVKKYAK
Sbjct: 361 EVEQNFSQCQKEQLRDDNKGLGFTLEELVKKYAK 394



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.317    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 249,162,588
Number of Sequences: 1026957
Number of extensions: 10533575
Number of successful extensions: 31920
Number of sequences better than 1.0e-02: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31917
Number of HSP's gapped (non-prelim): 1
length of query: 394
length of database: 324,149,939
effective HSP length: 123
effective length of query: 271
effective length of database: 197,834,228
effective search space: 53613075788
effective search space used: 53613075788
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 98 (42.4 bits)