BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645618|ref|NP_207794.1| hypothetical protein
[Helicobacter pylori 26695]
(370 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207794.1| (NC_000915) hypothetical protein [Helicoba... 736 0.0
ref|NP_472958.1| (NC_000910) hypothetical protein [Plasmodi... 53 5e-06
ref|NP_561132.1| (NC_003366) probable exonuclease [Clostrid... 53 6e-06
ref|NP_176681.1| (NM_105175) hypothetical protein [Arabidop... 52 8e-06
gb|AAD38273.1|AC006193_29 (AC006193) Hypothetical protein [... 52 8e-06
ref|NP_621958.1| (NC_003869) ATPase involved in DNA repair ... 52 1e-05
emb|CAB09784.1| (Z97054) KIAA0178 [Homo sapiens] 49 7e-05
ref|XP_050403.1| (XM_050403) similar to SMC1 (structural ma... 49 7e-05
ref|NP_006297.1| (NM_006306) SMC1 (structural maintenance o... 49 7e-05
ref|NP_113871.1| (NM_031683) segregation of mitotic chromos... 49 7e-05
ref|NP_062684.1| (NM_019710) SMC (segregation of mitotic ch... 49 7e-05
ref|XP_125458.1| (XM_125458) SMC (structural maintenance of... 49 7e-05
gb|AAD13141.1| (AF072712) SMC1 protein [Bos taurus] 49 7e-05
pir||S30782 integrin homolog - yeast (Saccharomyces cerevis... 48 2e-04
gb|AAB00143.1| (L03188) putative [Saccharomyces cerevisiae] 48 2e-04
ref|NP_473285.1| (NC_000521) hypothetical protein, PFC0760c... 47 3e-04
emb|CAA97648.1| (Z73259) ORF YLR086w [Saccharomyces cerevis... 47 4e-04
ref|NP_013187.1| (NC_001144) Stable Maintenance of Chromoso... 47 4e-04
ref|NP_003557.1| (NM_003566) early endosome antigen 1, 162k... 46 8e-04
gb|AAF27715.1|AF071820_1 (AF071820) PspA [Streptococcus pne... 46 8e-04
ref|NP_603419.1| (NC_003454) Exonuclease SBCC [Fusobacteriu... 45 0.001
ref|NP_010225.1| (NC_001136) involved intracellular protein... 45 0.001
ref|NP_213687.1| (NC_000918) hypothetical protein [Aquifex ... 45 0.001
sp|P25386|USO1_YEAST Intracellular protein transport protei... 45 0.001
ref|NP_048227.1| (NC_001993) ORF MSV156 hypothetical protei... 45 0.001
emb|CAA98620.1| (Z74105) ORF YDL058w [Saccharomyces cerevis... 45 0.001
ref|NP_343627.1| (NC_002754) Purine NTPase [Sulfolobus solf... 45 0.001
ref|NP_224152.1| (NC_000921) DNA REPAIR PROTEIN(RECOMBINATI... 45 0.001
pir||S66520 tropomyosin, fast muscle - Atlantic salmon >gi|... 45 0.002
emb|CAB62858.1| (AL035475) hypothetical protein MAL4P2.17 [... 45 0.002
emb|CAB64662.1| (AJ249991) myosin heavy chain [Mytilus gall... 45 0.002
ref|NP_593009.1| (NC_003424) hypothetical coiled-coil prote... 44 0.002
ref|NP_072883.1| (NC_000908) cytadherence accessory protein... 44 0.002
pir||A64505 P115 homolog - Methanococcus jannaschii 44 0.003
emb|CAA58041.1| (X82834) 256 kD golgin [Homo sapiens] 44 0.003
ref|NP_002069.2| (NM_002078) golgi autoantigen, golgin subf... 44 0.003
ref|NP_248653.1| (NC_000909) chromosome segretation protein... 44 0.003
ref|XP_137488.1| (XM_137488) RIKEN cDNA A430106J12 [Mus mus... 44 0.003
gb|AAC51791.1| (U31906) golgin-245 [Homo sapiens] >gi|15873... 44 0.003
pir||T18296 myosin heavy chain - Entamoeba histolytica >gi|... 44 0.004
gb|AAH31396.1| (BC031396) RIKEN cDNA 1200008O12 gene [Mus m... 43 0.007
ref|NP_562800.1| (NC_003366) hypothetical protein [Clostrid... 43 0.007
ref|NP_350050.1| (NC_003030) Hypothetical protein [Clostrid... 42 0.009
gb|AAM00871.1|AF486555_2 (AF486555) RloE [Campylobacter jej... 42 0.009
emb|CAB39037.2| (AL034559) hypothetical protein, PFC0960c [... 42 0.009
ref|NP_473326.1| (NC_000521) predicted using hexExon; MAL3P... 42 0.009
ref|NP_208184.1| (NC_000915) DNA repair protein (recN) [Hel... 42 0.009
>ref|NP_207794.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64645 hypothetical protein HP1003 - Helicobacter pylori (strain 26695)
gb|AAD08050.1| (AE000608) H. pylori predicted coding region HP1003 [Helicobacter
pylori 26695]
Length = 370
Score = 736 bits (1899), Expect = 0.0
Identities = 370/370 (100%), Positives = 370/370 (100%)
Query: 1 MGSATSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNK 60
MGSATSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNK
Sbjct: 1 MGSATSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNK 60
Query: 61 ETPTSKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKD 120
ETPTSKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKD
Sbjct: 61 ETPTSKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKD 120
Query: 121 LETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRAFEFFKYMN 180
LETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRAFEFFKYMN
Sbjct: 121 LETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRAFEFFKYMN 180
Query: 181 YQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLE 240
YQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLE
Sbjct: 181 YQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLE 240
Query: 241 HLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIKRCEKS 300
HLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIKRCEKS
Sbjct: 241 HLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIKRCEKS 300
Query: 301 LNFLQKELQCFKTLLKSASIALENLQNNHQITAVTQDTQENTNALKNTTQDFNKTTNEPT 360
LNFLQKELQCFKTLLKSASIALENLQNNHQITAVTQDTQENTNALKNTTQDFNKTTNEPT
Sbjct: 301 LNFLQKELQCFKTLLKSASIALENLQNNHQITAVTQDTQENTNALKNTTQDFNKTTNEPT 360
Query: 361 NPNNNYGMDF 370
NPNNNYGMDF
Sbjct: 361 NPNNNYGMDF 370
>ref|NP_472958.1| (NC_000910) hypothetical protein [Plasmodium falciparum]
pir||C71622 hypothetical protein PFB0145c - malaria parasite (Plasmodium
falciparum)
gb|AAC71819.1| (AE001375) hypothetical protein [Plasmodium falciparum 3D7]
Length = 1979
Score = 53.1 bits (126), Expect = 5e-06
Identities = 85/366 (23%), Positives = 153/366 (41%), Gaps = 42/366 (11%)
Query: 6 SQIESLKKR----ENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNKE 61
S+IE L+K ++ D+ D L EK + K+K +NEKE Q KE+ +E
Sbjct: 153 SKIEELEKELKEVKDKNIDNNDYENKLKEKEDFVKQKIDM-LNEKENLLQEKELDINKRE 211
Query: 62 TPTSKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKDL 121
++ I+K + + + K+YL K+ +IID++K+ + L+ +E +DL
Sbjct: 212 KKINEKEKNIIKKEETFHN-IEKEYLEKNKERETISIEIIDIKKHLEKLKIEIKEKKEDL 270
Query: 122 ETDLSHSKKRFELYTRLKSMSKVFISK-SIVKNLEKIALDFKSDRHSISQRAFEFFKYMN 180
E +++K +SK +++K L+ + +S++ E K
Sbjct: 271 E-----------------NLNKKLLSKENVLKELKGCVKEKNETINSLNDNIIEKEKKYK 313
Query: 181 YQNLSLTDKGNMF-LVAKFFKDSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQV---WL 236
L +K L+ K K+ E +K + K + + L K++ +
Sbjct: 314 LLEYELEEKNKQIDLLNKQEKEKE-----KEKEREKEKEREKEKEKEYDTLIKELKDEKI 368
Query: 237 NLLEHLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIKR 296
++LE + ++ K+ FL + KDLK N N L +Y+ IK
Sbjct: 369 SILEKVHSIKVREMDIEKREHNFLHME--DQLKDLKNSFVKNNNQLKVYKCE-----IKN 421
Query: 297 CEKSLNFLQKELQCFKTLLKSASIALENLQN--NHQITAVTQDTQENTNALKNTTQDFNK 354
+ L +KEL+ + + K L N N QI A ++ +E + LK ++ K
Sbjct: 422 LKTELEKKEKELKDIENVSKEEINKLINQLNEKEKQILAFNKNHKEEIHGLKEELKESVK 481
Query: 355 TTNEPT 360
T T
Sbjct: 482 ITKIET 487
Score = 51.6 bits (122), Expect = 1e-05
Identities = 74/348 (21%), Positives = 147/348 (41%), Gaps = 37/348 (10%)
Query: 43 INEKELNRQLKEVRWFNKETPT-SKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQKKII 101
I +KEL+ QL+E +N + + S KK ++ YK+ I++ +KL T K+
Sbjct: 496 IKQKELD-QLQEK--YNAQIESISIELSKKEKEYNQYKNTYIEEINNLNEKLEETNKEYT 552
Query: 102 DLEKNY-KDLRALKEEFS------KDLETDLSHSKKRFELYTRL--KSMSKVFISKSIVK 152
+L+ NY ++ L + K + T +S K L K ++ S +
Sbjct: 553 NLQNNYTNEINMLNNDIHMLNGNIKTMNTQISTLKNDVHLLNEQIDKLNNEKGTLNSKIS 612
Query: 153 NLEKIALDFKSDRHSISQRAFEFFKYMNYQNLSLTDKGNMFLVAKFFKDSALLVNIARFE 212
L +D K ++ ++ + + ++ + +K N L + N + E
Sbjct: 613 ELNVQIMDLKEEKDFLNNQIVDLSNQIDLLTRKMEEKENKMLEQE---------NKYKQE 663
Query: 213 MKKIDDSVKNS----NPQDNLLDKQVWLNLLE-HLKRLEEENYCFAKKRKEFLETRAMEL 267
M+ + ++K+S N + + D + L+L E +K ++EE+ + K+ + R E+
Sbjct: 664 MELLRGNIKSSENILNNDEEVCDLKRKLSLKESEMKMMKEEHDKKLAELKDDCDVRIREM 723
Query: 268 SKD----LKFLTQANENDLPIYERGQRDKII---KRCEKSLNFLQKELQCFKTLLKSA-- 318
++ + L + E+ + + DKI ++ E +N L++E + +K
Sbjct: 724 NEKNEDKINMLKEEYEDKINTLKEQNEDKINTLKEQNEDKINTLKEEYEHKINTMKEEYE 783
Query: 319 -SIALENLQNNHQITAVTQDTQENTNALKNTTQDFNKTTNEPTNPNNN 365
I N QN H+I + + + N +K +D T NE N
Sbjct: 784 HKINTLNEQNEHKINTLNEQNEHKINTMKEEYEDKMNTLNEQNEDKMN 831
Score = 43.1 bits (100), Expect = 0.005
Identities = 73/355 (20%), Positives = 149/355 (41%), Gaps = 48/355 (13%)
Query: 7 QIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNKETPTSK 66
++E + + ++ F+ L S + + + +K +EK+L + KE+ NK+
Sbjct: 958 EVEEKEHKRHSSFNILKSKEKFFKNSIEDKSHELKKKHEKDLLSKDKEIEEKNKKIKELN 1017
Query: 67 NTYKKIQ-KLAVYKSP--------------LIKDYLYTIKKLFATQKKIIDLEKNYK--- 108
N KK+Q ++ VYK L+KD K+ ++ I++EKN +
Sbjct: 1018 NDIKKLQDEILVYKKQSNAQQVDHKKKSWILLKD---KSKEKIKDKENQINVEKNEEKDL 1074
Query: 109 -----DLRALKEEFSKDLETDLSHSKK-----RFELYTRLKSMSKVFISKSIVKNLEKIA 158
++R L EE K +T L + KK +L +++ S V +E+
Sbjct: 1075 KKKDDEIRILNEELVK-YKTILYNLKKDPLLQNQDLLSKIDINSLTINEGMCVDKIEEHI 1133
Query: 159 LDFKSDRHSISQRAFEF---FKYMNYQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKK 215
LD+ + + F+ + + + L +K N + + +N+ KK
Sbjct: 1134 LDYDEEINKSRSNLFQLKNEICSLTTEVMELNNKKNELI------EENNKLNLVDQGKKK 1187
Query: 216 IDDSVKNSNPQDNLLDKQVWLNLLEHLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLT 275
+ V+ + L+KQ L + K+++E N K E +E + S DL
Sbjct: 1188 LKKDVEKQKKEIEKLNKQ----LTKCNKQIDELNEEVEKLNNENIE--LITYSNDLNNKF 1241
Query: 276 QANENDLPIYERGQRDKIIKRCEKSLNFLQKELQCFKTLLKSASIALENLQNNHQ 330
EN+L + + + + IK+ + ++ ++KE++ + K + NL+ ++
Sbjct: 1242 DMKENNL-MMKLDENEDNIKKMKSKIDDMEKEIKYREDEKKRNLNEINNLKKKNE 1295
>ref|NP_561132.1| (NC_003366) probable exonuclease [Clostridium perfringens]
dbj|BAB79922.1| (AP003185) probable exonuclease [Clostridium perfringens]
Length = 1175
Score = 52.8 bits (125), Expect = 6e-06
Identities = 80/361 (22%), Positives = 156/361 (43%), Gaps = 58/361 (16%)
Query: 9 ESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEK--ELNRQLKEVRWFNKETPTSK 66
ESL K+ N + LK ++ +KEK + K L++ ++ KETP
Sbjct: 437 ESLDKQFNEIKSEEVELKKYIKNLTEDKEKSEKDLKVKVESLSKIRDKLESLLKETPGDS 496
Query: 67 NTYKKIQ-KLAVYKSPL--IKDYLYTIKKLFATQKKIIDLEKNY--------KDLRALKE 115
N+ + Q KL Y+ L K+ ++++ T+ + K + K++R LK+
Sbjct: 497 NSILEKQIKLGEYREKLNKYKEIKNSLEESLKTKNNFEEKLKTFENQKLLLEKEVRELKD 556
Query: 116 EFSKDLETDLSHSKKRF-----------ELYTRLKSMSKVFISKSIVKNLEKIALDFKSD 164
+K +L+H + + L + K+ + +S N + I L+ K +
Sbjct: 557 YINKVKVEELAHKLRENLVEGECCPVCGSTHHELNKVEKINLEES---NEKTILLESKEE 613
Query: 165 RHSISQRAFEFFKY---MNYQN-------LSLTDKGNM------FLVAKFFKDSALLVNI 208
+ + + EF K + Y+N +S+ + G + FL +F + L I
Sbjct: 614 K--LKELILEFSKIEATLEYENKKIEELNISIEEVGEVNEERLKFLEEEF---NTLKDKI 668
Query: 209 ARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLEHLKRLEEENYCFAKKRKEFLETRAMELS 268
F +KK N + +L + N LE++ E C R++ + ++ EL
Sbjct: 669 EEFNLKK-------ENLEKDLEKLKEEKNNLENIFNKAEVILCEKIVREKEIASKIKELD 721
Query: 269 KDLKFLTQ---ANENDLPIYERGQRDKIIKRCEKSLNFLQKELQCFKTLLKSASIALENL 325
K+LK + +N+L I + +++I + EK N L+KE++ +T L+ ++ + L
Sbjct: 722 KELKLKNSELNSIKNELKIEDIKLENELILKKEKEKNLLEKEIRILRTQLEESNKIKDEL 781
Query: 326 Q 326
+
Sbjct: 782 R 782
Score = 48.1 bits (113), Expect = 2e-04
Identities = 90/383 (23%), Positives = 155/383 (39%), Gaps = 75/383 (19%)
Query: 8 IESLKKRENALFDHLDS--LKSLLEKTHWEKEKFTPPIN-----EKELNRQLKEVRWFNK 60
+ES K+R+ D LK +K ++ K +N EK LN +LKE +
Sbjct: 355 LESQKERDILFQIKADGVKLKEACKKIFEDRSKCDTKLNSIEENEKRLNEELKEKEERKE 414
Query: 61 ETPTSKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKD 120
E + KI ++ Y K+ + + ++L+K K+L KE+ KD
Sbjct: 415 ELFVHEEFKNKINSGLF----ILNSYESLDKQFNEIKSEEVELKKYIKNLTEDKEKSEKD 470
Query: 121 LETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRAFEFFKYMN 180
L+ +++S+SK I LE + + D +SI ++ + +Y
Sbjct: 471 LKV-------------KVESLSK------IRDKLESLLKETPGDSNSILEKQIKLGEYRE 511
Query: 181 YQNL----------SLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNSNP----Q 226
N SL K N K F++ LL+ E+K + VK +
Sbjct: 512 KLNKYKEIKNSLEESLKTKNNFEEKLKTFENQKLLLEKEVRELKDYINKVKVEELAHKLR 571
Query: 227 DNLLDKQVW---------LNLLEHLKRLEEENY--CFAKKRKEFLETRAMELSKDLKFLT 275
+NL++ + LN +E + LEE N + ++E L+ +E SK L
Sbjct: 572 ENLVEGECCPVCGSTHHELNKVEKIN-LEESNEKTILLESKEEKLKELILEFSKIEATLE 630
Query: 276 QAN----ENDLPIYERGQRDKIIKRCEKSLNFLQKELQCFKTLLKSASIALENLQNNHQI 331
N E ++ I E G+ + E+ L FL++E K ++ ++ ENL+ +
Sbjct: 631 YENKKIEELNISIEEVGEVN------EERLKFLEEEFNTLKDKIEEFNLKKENLEKD--- 681
Query: 332 TAVTQDTQENTNALKNTTQDFNK 354
+ +E N L+N FNK
Sbjct: 682 ---LEKLKEEKNNLENI---FNK 698
>ref|NP_176681.1| (NM_105175) hypothetical protein [Arabidopsis thaliana]
Length = 1318
Score = 52.4 bits (124), Expect = 8e-06
Identities = 87/368 (23%), Positives = 164/368 (43%), Gaps = 40/368 (10%)
Query: 3 SATSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNR-----QLKEVRW 57
+ T++I SL++ E ++ + ++ L + E ++ K E E + +K++
Sbjct: 600 NVTAEISSLREWEGSVLEKIEELSKVKESLVDKETKLQSITQEAEELKGREAAHMKQIEE 659
Query: 58 FNKETPTSKNTYKKIQKLAVYKSPLIKD----YLYTIKKLFATQKKIIDLEKNYKDLRAL 113
+ + + K+Q + V +S +K+ YL I++L + + D N DL+++
Sbjct: 660 LSTANASLVDEATKLQSI-VQESEDLKEKEAGYLKKIEELSVANESLAD---NVTDLQSI 715
Query: 114 KEEFSKDL-ETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRA 172
+E SKDL E ++++ KK EL +S+ ++ ++++++ A + + S ++
Sbjct: 716 VQE-SKDLKEREVAYLKKIEELSVANESLVD---KETKLQHIDQEAEELRGREASHLKKI 771
Query: 173 FEFFKYMNYQNLSLTDK-GNMFLVAKFFKDSALLVNIARFEMKKIDD-SVKNSNPQDNLL 230
E K +N +L D NM +A+ KD L +KKID+ S N DN+
Sbjct: 772 EELSK----ENENLVDNVANMQNIAEESKD---LREREVAYLKKIDELSTANGTLADNVT 824
Query: 231 DKQVWLNLLEHLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQR 290
+ Q N+ E K L E KK +E E + K K T EN+ E +R
Sbjct: 825 NLQ---NISEENKELRERETTLLKKAEELSELNESLVDKASKLQTVVQENE----ELRER 877
Query: 291 DKIIKRCEKSLNFLQKELQCFKTLLKSASIALENLQNNHQITAVTQDTQENTNALKNTTQ 350
+ + + L+ L + L +T L+ ++ E L+ TA + +E L +
Sbjct: 878 ETAYLKKIEELSKLHEILSDQETKLQISNHEKEELKERE--TAYLKKIEE----LSKVQE 931
Query: 351 DFNKTTNE 358
D NE
Sbjct: 932 DLLNKENE 939
>gb|AAD38273.1|AC006193_29 (AC006193) Hypothetical protein [Arabidopsis thaliana]
Length = 1313
Score = 52.4 bits (124), Expect = 8e-06
Identities = 87/368 (23%), Positives = 164/368 (43%), Gaps = 40/368 (10%)
Query: 3 SATSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNR-----QLKEVRW 57
+ T++I SL++ E ++ + ++ L + E ++ K E E + +K++
Sbjct: 595 NVTAEISSLREWEGSVLEKIEELSKVKESLVDKETKLQSITQEAEELKGREAAHMKQIEE 654
Query: 58 FNKETPTSKNTYKKIQKLAVYKSPLIKD----YLYTIKKLFATQKKIIDLEKNYKDLRAL 113
+ + + K+Q + V +S +K+ YL I++L + + D N DL+++
Sbjct: 655 LSTANASLVDEATKLQSI-VQESEDLKEKEAGYLKKIEELSVANESLAD---NVTDLQSI 710
Query: 114 KEEFSKDL-ETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRA 172
+E SKDL E ++++ KK EL +S+ ++ ++++++ A + + S ++
Sbjct: 711 VQE-SKDLKEREVAYLKKIEELSVANESLVD---KETKLQHIDQEAEELRGREASHLKKI 766
Query: 173 FEFFKYMNYQNLSLTDK-GNMFLVAKFFKDSALLVNIARFEMKKIDD-SVKNSNPQDNLL 230
E K +N +L D NM +A+ KD L +KKID+ S N DN+
Sbjct: 767 EELSK----ENENLVDNVANMQNIAEESKD---LREREVAYLKKIDELSTANGTLADNVT 819
Query: 231 DKQVWLNLLEHLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQR 290
+ Q N+ E K L E KK +E E + K K T EN+ E +R
Sbjct: 820 NLQ---NISEENKELRERETTLLKKAEELSELNESLVDKASKLQTVVQENE----ELRER 872
Query: 291 DKIIKRCEKSLNFLQKELQCFKTLLKSASIALENLQNNHQITAVTQDTQENTNALKNTTQ 350
+ + + L+ L + L +T L+ ++ E L+ TA + +E L +
Sbjct: 873 ETAYLKKIEELSKLHEILSDQETKLQISNHEKEELKERE--TAYLKKIEE----LSKVQE 926
Query: 351 DFNKTTNE 358
D NE
Sbjct: 927 DLLNKENE 934
>ref|NP_621958.1| (NC_003869) ATPase involved in DNA repair [Thermoanaerobacter
tengcongensis]
gb|AAM23562.1| (AE012999) ATPase involved in DNA repair [Thermoanaerobacter
tengcongensis]
Length = 1177
Score = 51.6 bits (122), Expect = 1e-05
Identities = 81/357 (22%), Positives = 151/357 (41%), Gaps = 61/357 (17%)
Query: 4 ATSQIESLKKRENALFDHLDSLKSLLEKTH--WEKEKFTPPINEKELNRQLKEVRWFNKE 61
A +++E LK+ E L + L EK WE++K ELN+ L++ R +++
Sbjct: 218 ALAKLELLKEEEKNLSAEREELLKEREKLKEIWERQK--------ELNQFLEKKRLLDEK 269
Query: 62 TPTSKNTYKKIQKL--AVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSK 119
+ KI+K A+ P I T KKL +K++ K +++ A E+ K
Sbjct: 270 ASEIEVKRGKIEKARKALSVKPYIDSVEETEKKLLLNKKELEKHAKELEEVSAQLEKIEK 329
Query: 120 DLETDLSHSKKRFELYTRLKSMSKVFIS-----KSIVKNLEKIALDFKSDRHSISQRAFE 174
D E +++ L + K + K + + EK+ ++K+ +I + E
Sbjct: 330 DYEITFREKEEKIPLLIEKEERLKRAVQIEDEIKRLSEEREKLLTEYKNLESNIKRLEEE 389
Query: 175 FFK-YMNYQNL----------------SLTDKGNMFLVAKFFKDSALLVNIARFEMKKID 217
K +++ +NL S +K N+F + K+ + + KI+
Sbjct: 390 KEKLFLSIENLKKNIAEKEEKIVSIRISTEEKENVFKAFELEKEFERVKREREEKAYKIE 449
Query: 218 D---------------SVKNSNPQDNLLDKQVWLNLLEHLKRL-EEENYCFAK----KRK 257
+ V+ + ++ L ++ NLLE K L EE + F K KR
Sbjct: 450 EIEKLVEKQKGEYERIKVELTEKEEELQKEESSFNLLEVQKPLSSEELFNFQKELESKRL 509
Query: 258 EFLETR-----AMELSKDLKFLTQANENDLPIYERGQRDKIIKRCEKSLNFLQKELQ 309
+ +E + +L K LK + + E + E+ +R+ + K K+L+ LQKE++
Sbjct: 510 KLIEAQRNKELEEKLEKTLKEVLEEREKLVGELEKTEREYVEK--GKALDALQKEIE 564
>emb|CAB09784.1| (Z97054) KIAA0178 [Homo sapiens]
Length = 725
Score = 49.3 bits (116), Expect = 7e-05
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 1 MGSATSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNK 60
+ S +IE KKR + + D L K L K E+++ I EK+ K ++
Sbjct: 235 LASKNKEIEKDKKRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQYIK- 293
Query: 61 ETPTSKNTYKKIQKLAVYKSPL---IKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEF 117
+NT KI+KL K L K Y + +K+++ +EK ++ EE
Sbjct: 294 ---AKENTSHKIKKLEAAKKSLQNAQKHYKKRKGDMDELEKEMLSVEKARQEFEERMEEE 350
Query: 118 SKDLETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDR 165
S+ DL+ + + + Y RLK + + ++ + LEK D K+D+
Sbjct: 351 SQSQGRDLTLEENQVKKYHRLKEEASK-RAATLAQELEKFNRDQKADQ 397
>ref|XP_050403.1| (XM_050403) similar to SMC1 (structural maintenance of chromosomes
1, yeast)-like 1; Segregation of mitotic chromosomes 1
(SMC1, yeast human homolog of [Homo sapiens]
dbj|BAA11495.2| (D80000) similar to mitosis-specific chromosome segregation protein
SMC1 of S.cerevisiae. [Homo sapiens]
Length = 1233
Score = 49.3 bits (116), Expect = 7e-05
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 1 MGSATSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNK 60
+ S +IE KKR + + D L K L K E+++ I EK+ K ++
Sbjct: 242 LASKNKEIEKDKKRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQYIK- 300
Query: 61 ETPTSKNTYKKIQKLAVYKSPL---IKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEF 117
+NT KI+KL K L K Y + +K+++ +EK ++ EE
Sbjct: 301 ---AKENTSHKIKKLEAAKKSLQNAQKHYKKRKGDMDELEKEMLSVEKARQEFEERMEEE 357
Query: 118 SKDLETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDR 165
S+ DL+ + + + Y RLK + + ++ + LEK D K+D+
Sbjct: 358 SQSQGRDLTLEENQVKKYHRLKEEASK-RAATLAQELEKFNRDQKADQ 404
>ref|NP_006297.1| (NM_006306) SMC1 (structural maintenance of chromosomes 1,
yeast)-like 1; Segregation of mitotic chromosomes 1
(SMC1, yeast human homolog of [Homo sapiens]
pir||I54383 chromosome segregation protein smc1 [similarity] - human
gb|AAB34405.1| (S78271) mitosis-specific chromosome segregation protein SMC1
homolog [Homo sapiens]
Length = 1233
Score = 49.3 bits (116), Expect = 7e-05
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 1 MGSATSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNK 60
+ S +IE KKR + + D L K L K E+++ I EK+ K ++
Sbjct: 242 LASKNKEIEKDKKRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQYIK- 300
Query: 61 ETPTSKNTYKKIQKLAVYKSPL---IKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEF 117
+NT KI+KL K L K Y + +K+++ +EK ++ EE
Sbjct: 301 ---AKENTSHKIKKLEAAKKSLQNAQKHYKKRKGDMDELEKEMLSVEKARQEFEERMEEE 357
Query: 118 SKDLETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDR 165
S+ DL+ + + + Y RLK + + ++ + LEK D K+D+
Sbjct: 358 SQSQGRDLTLEENQVKKYHRLKEEASK-RAATLAQELEKFNRDQKADQ 404
>ref|NP_113871.1| (NM_031683) segregation of mitotic chromosomes b; SMC (segregation
of mitotic chromosomes 1)-like 1 (yeast) [Rattus
norvegicus]
emb|CAA06377.1| (AJ005113) SMC-protein [Rattus norvegicus]
Length = 1233
Score = 49.3 bits (116), Expect = 7e-05
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 1 MGSATSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNK 60
+ S +IE KKR + + D L K L K E+++ I EK+ K ++
Sbjct: 242 LASKNKEIEKDKKRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQYIK- 300
Query: 61 ETPTSKNTYKKIQKLAVYKSPL---IKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEF 117
+NT KI+KL K L K Y + +K+++ +EK ++ EE
Sbjct: 301 ---AKENTSHKIKKLEAAKKSLQNRQKHYKKRKGDMDELEKEMLSVEKARQEFEERMEEE 357
Query: 118 SKDLETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDR 165
S+ DL+ + + + Y RLK + + ++ + LEK D K+D+
Sbjct: 358 SQSQGRDLTLEENQVKKYHRLKEEASK-RAATLAQELEKFNRDQKADQ 404
>ref|NP_062684.1| (NM_019710) SMC (segregation of mitotic chromosomes 1)-like 1
(yeast); chromosome segregation protein SmcB;
segregation of mitotic chromosomes b [Mus musculus]
gb|AAD27753.1|AF047600_1 (AF047600) chromosome segregation protein SmcB [Mus musculus]
Length = 1233
Score = 49.3 bits (116), Expect = 7e-05
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 1 MGSATSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNK 60
+ S +IE KKR + + D L K L K E+++ I EK+ K ++
Sbjct: 242 LASKNKEIEKDKKRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQYIK- 300
Query: 61 ETPTSKNTYKKIQKLAVYKSPL---IKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEF 117
+NT KI+KL K L K Y + +K+++ +EK ++ EE
Sbjct: 301 ---AKENTSHKIKKLEAAKKSLQHAQKHYKKRKGDMDELEKEMLSVEKARQEFEERMEEE 357
Query: 118 SKDLETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDR 165
S+ DL+ + + + Y RLK + + ++ + LEK D K+D+
Sbjct: 358 SQSQGRDLTLEENQVKKYHRLKEEASK-RAATLAQELEKFNRDQKADQ 404
>ref|XP_125458.1| (XM_125458) SMC (structural maintenance of chromosomes 1)-like 1
[Mus musculus]
Length = 1233
Score = 49.3 bits (116), Expect = 7e-05
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 1 MGSATSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNK 60
+ S +IE KKR + + D L K L K E+++ I EK+ K ++
Sbjct: 242 LASKNKEIEKDKKRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQYIK- 300
Query: 61 ETPTSKNTYKKIQKLAVYKSPL---IKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEF 117
+NT KI+KL K L K Y + +K+++ +EK ++ EE
Sbjct: 301 ---AKENTSHKIKKLEAAKKSLQNAQKHYKKRKGDMDELEKEMLSVEKARQEFEERMEEE 357
Query: 118 SKDLETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDR 165
S+ DL+ + + + Y RLK + + ++ + LEK D K+D+
Sbjct: 358 SQSQGRDLTLEENQVKKYHRLKEEASK-RAATLAQELEKFNRDQKADQ 404
>gb|AAD13141.1| (AF072712) SMC1 protein [Bos taurus]
Length = 1233
Score = 49.3 bits (116), Expect = 7e-05
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 1 MGSATSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNK 60
+ S +IE KKR + + D L K L K E+++ I EK+ K ++
Sbjct: 242 LASKNKEIEKDKKRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQYIK- 300
Query: 61 ETPTSKNTYKKIQKLAVYKSPL---IKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEF 117
+NT KI+KL K L K Y + +K+++ +EK ++ EE
Sbjct: 301 ---AKENTSHKIKKLEAAKKSLQNAQKHYKKRKGDMDELEKEMLSVEKARQEFEERMEEE 357
Query: 118 SKDLETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDR 165
S+ DL+ + + + Y RLK + + ++ + LEK D K+D+
Sbjct: 358 SQSQGRDLTLEENQVKKYHRLKEEASK-RAATLAQELEKFNRDQKADQ 404
>pir||S30782 integrin homolog - yeast (Saccharomyces cerevisiae)
Length = 1726
Score = 47.8 bits (112), Expect = 2e-04
Identities = 78/352 (22%), Positives = 157/352 (44%), Gaps = 58/352 (16%)
Query: 6 SQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKE-LNRQLKEVRWFNKETPT 64
S +E+ K D + L+ +LE +KE T + K +++Q ++ KE T
Sbjct: 723 SILETELKNVRDSLDEMTQLRDVLETK--DKENQTALLEYKSTIHKQEDSIKTLEKELET 780
Query: 65 SKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKDLETD 124
+ KK + + K K LFA +++ +E+N K+L+ K+ +++
Sbjct: 781 ILSQKKKAED-GINKMG---------KDLFALSREMQAVEENCKNLQKEKD------KSN 824
Query: 125 LSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIAL---DFKSDRHSISQRAFEF-FKYMN 180
++H K+ L + +K+ K+I +NLEK+ + + ++ IS+ E+ ++ +
Sbjct: 825 VNHQKETKSLKEDI--AAKITEIKAINENLEKMKIQCNNLSKEKEHISKELVEYKSRFQS 882
Query: 181 YQNL--SLTDKGNMFLVAKFFKDSALLVN--IARFEMKKIDDSVKNSNPQDNLLDKQVWL 236
+ NL LT+K + +A +KD I E K + S++ SN Q
Sbjct: 883 HDNLVAKLTEK--LKSLANNYKDMQAENESLIKAVEESKNESSIQLSNLQ---------- 930
Query: 237 NLLEHLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIKR 296
N ++ + + E+EN+ + + +E +L K + L Q E +II +
Sbjct: 931 NKIDSMSQ-EKENF---QIERGSIEKNIEQLKKTISDLEQTKE------------EIISK 974
Query: 297 CEKSLNFLQKELQCFKTLLKSASIAL-ENLQNNHQITAVTQDTQENTNALKN 347
+ S + + ++ K L++A+ A EN+ ++T ++ + A KN
Sbjct: 975 SDSSKDEYESQISLLKEKLETATTANDENVNKISELTKTREELEAELAAYKN 1026
Score = 45.4 bits (106), Expect = 0.001
Identities = 76/366 (20%), Positives = 167/366 (44%), Gaps = 51/366 (13%)
Query: 6 SQIESLKKR-ENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNKETPT 64
SQI LK++ E A + +++ + E T +E K L +L+ + T
Sbjct: 984 SQISLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELET------KLET 1037
Query: 65 SKNTYKKIQK----LAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKD 120
S+ K++++ L K L K+ T ++L + + + LEK ++DL A +++ +
Sbjct: 1038 SEKALKEVKENEEHLKEEKIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKKYEEQ 1097
Query: 121 L-ETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRAFEFFKYM 179
+ + ++++ +L + S + ++SI K +++ + K+ + + +++
Sbjct: 1098 IANKERQYNEEISQLNDEITSTQQE--NESIKKKNDELEGEVKAMKSTSEEQS------- 1148
Query: 180 NYQNLSLTDKGNMFLVAKFFK------DSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQ 233
NL ++ + L K K +++LL +I E + + +K + N +K+
Sbjct: 1149 ---NLKKSEIDALNLQIKELKKKNETNEASLLESIKSIESETV--KIKELQDECNFKEKE 1203
Query: 234 VWLNLLEHLKRLEEENYCF------AKKRKEFLETRAMELSKDLKFLT------QANEND 281
V L + LK E++N + ++K KE L+ + EL L+ +T + +E++
Sbjct: 1204 V-SELEDKLKASEDKNSKYLELQKESEKIKEELDAKTTELKIQLEKVTNLSKAKEKSESE 1262
Query: 282 LPIYERGQRDKIIKRCEKSLNFLQKELQCFKTLLKSASIALENLQNNHQITAVTQDTQEN 341
L ++ ++ K E+ L L+ E+Q +K+ + E N + +TQ+ E
Sbjct: 1263 LSRLKKTSSEE-RKNAEEQLEKLKNEIQ-----IKNQAFEKERKLLNEGSSTITQEYSEK 1316
Query: 342 TNALKN 347
N L++
Sbjct: 1317 INTLED 1322
>gb|AAB00143.1| (L03188) putative [Saccharomyces cerevisiae]
Length = 1015
Score = 47.8 bits (112), Expect = 2e-04
Identities = 78/352 (22%), Positives = 157/352 (44%), Gaps = 58/352 (16%)
Query: 6 SQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKE-LNRQLKEVRWFNKETPT 64
S +E+ K D + L+ +LE +KE T + K +++Q ++ KE T
Sbjct: 12 SILETELKNVRDSLDEMTQLRDVLETK--DKENQTALLEYKSTIHKQEDSIKTLEKELET 69
Query: 65 SKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKDLETD 124
+ KK + + K K LFA +++ +E+N K+L+ K+ +++
Sbjct: 70 ILSQKKKAED-GINKMG---------KDLFALSREMQAVEENCKNLQKEKD------KSN 113
Query: 125 LSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIAL---DFKSDRHSISQRAFEF-FKYMN 180
++H K+ L + +K+ K+I +NLEK+ + + ++ IS+ E+ ++ +
Sbjct: 114 VNHQKETKSLKEDI--AAKITEIKAINENLEKMKIQCNNLSKEKEHISKELVEYKSRFQS 171
Query: 181 YQNL--SLTDKGNMFLVAKFFKDSALLVN--IARFEMKKIDDSVKNSNPQDNLLDKQVWL 236
+ NL LT+K + +A +KD I E K + S++ SN Q
Sbjct: 172 HDNLVAKLTEK--LKSLANNYKDMQAENESLIKAVEESKNESSIQLSNLQ---------- 219
Query: 237 NLLEHLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIKR 296
N ++ + + E+EN+ + + +E +L K + L Q E +II +
Sbjct: 220 NKIDSMSQ-EKENF---QIERGSIEKNIEQLKKTISDLEQTKE------------EIISK 263
Query: 297 CEKSLNFLQKELQCFKTLLKSASIAL-ENLQNNHQITAVTQDTQENTNALKN 347
+ S + + ++ K L++A+ A EN+ ++T ++ + A KN
Sbjct: 264 SDSSKDEYESQISLLKEKLETATTANDENVNKISELTKTREELEAELAAYKN 315
Score = 45.4 bits (106), Expect = 0.001
Identities = 76/366 (20%), Positives = 167/366 (44%), Gaps = 51/366 (13%)
Query: 6 SQIESLKKR-ENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNKETPT 64
SQI LK++ E A + +++ + E T +E K L +L+ + T
Sbjct: 273 SQISLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELET------KLET 326
Query: 65 SKNTYKKIQK----LAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKD 120
S+ K++++ L K L K+ T ++L + + + LEK ++DL A +++ +
Sbjct: 327 SEKALKEVKENEEHLKEEKIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKKYEEQ 386
Query: 121 L-ETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRAFEFFKYM 179
+ + ++++ +L + S + ++SI K +++ + K+ + + +++
Sbjct: 387 IANKERQYNEEISQLNDEITSTQQE--NESIKKKNDELEGEVKAMKSTSEEQS------- 437
Query: 180 NYQNLSLTDKGNMFLVAKFFK------DSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQ 233
NL ++ + L K K +++LL +I E + + +K + N +K+
Sbjct: 438 ---NLKKSEIDALNLQIKELKKKNETNEASLLESIKSIESETV--KIKELQDECNFKEKE 492
Query: 234 VWLNLLEHLKRLEEENYCF------AKKRKEFLETRAMELSKDLKFLT------QANEND 281
V L + LK E++N + ++K KE L+ + EL L+ +T + +E++
Sbjct: 493 V-SELEDKLKASEDKNSKYLELQKESEKIKEELDAKTTELKIQLEKVTNLSKAKEKSESE 551
Query: 282 LPIYERGQRDKIIKRCEKSLNFLQKELQCFKTLLKSASIALENLQNNHQITAVTQDTQEN 341
L ++ ++ K E+ L L+ E+Q +K+ + E N + +TQ+ E
Sbjct: 552 LSRLKKTSSEE-RKNAEEQLEKLKNEIQ-----IKNQAFEKERKLLNEGSSTITQEYSEK 605
Query: 342 TNALKN 347
N L++
Sbjct: 606 INTLED 611
>ref|NP_473285.1| (NC_000521) hypothetical protein, PFC0760c [Plasmodium falciparum]
pir||T18501 hypothetical protein C0760c - malaria parasite (Plasmodium
falciparum)
emb|CAB11140.1| (Z98551) hypothetical protein, PFC0760c [Plasmodium falciparum 3D7]
Length = 3394
Score = 47.4 bits (111), Expect = 3e-04
Identities = 84/387 (21%), Positives = 154/387 (39%), Gaps = 60/387 (15%)
Query: 11 LKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKE---LNRQLKEVRWFNKETPTSKN 67
LK+ + +F +++K L + + + F IN + L +L ++ N++ +
Sbjct: 1782 LKEHKEEIFLLKENIKILQKDNTYLNDMFKNQINYVDNNLLKNRLDQLFNINQDLQKHLD 1841
Query: 68 TYKKIQKLAVYKSPLIKDYLYTIK-KLFATQKKIIDLEKN----YKDLRALKEEFSKDLE 122
T +K + Y IK+ L K K+ +K II L+K+ D + + +
Sbjct: 1842 TNQKHLEQLKYDYIEIKERLKIEKTKINKQEKYIIQLQKDNNLILNDFNSTTTTTNNNNN 1901
Query: 123 TDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRAFEFFKYMNYQ 182
D ++ + + FI S+ NLE L+ K +N +
Sbjct: 1902 NDNNNDNNN-DNNDNNNDTYQQFIH-SLKANLENSRLELKE------------LSNLN-E 1946
Query: 183 NLSLTDKGNMFLVA----KFFKDSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQVWLNL 238
+ L+D+ N + K FK+ + + + IDD+ KN Q N L
Sbjct: 1947 KIQLSDEKNRMKITILEDKLFKNEKDKMKLQQI----IDDNNKNYMIQYN--------KL 1994
Query: 239 LEHLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYER----------- 287
+L L EEN ++E+ E + +L+ D K ND+ I E
Sbjct: 1995 KTNLDMLSEENRMLLLNKEEY-EKQIEQLNHDHKLFISTKNNDIQIIENEKLQEQVDQYI 2053
Query: 288 ---GQRDKIIKRCEKSLNFLQKELQCFKTLLKSASIA--LENLQNNHQITA--VTQDTQE 340
++DKII + L + + ++ ++A +N++N+H + + DT
Sbjct: 2054 TTINEKDKIIVHLNLQIKKLANQNEHMRSRCDIFNVAHSQDNIKNDHMVVGEDIMGDTNH 2113
Query: 341 NTNALKNTTQDFNKTTNEPTNPNNNYG 367
+ N KN Q N+ N+ TN + N G
Sbjct: 2114 DVN--KNIDQGTNQHINQGTNQHINQG 2138
>emb|CAA97648.1| (Z73259) ORF YLR086w [Saccharomyces cerevisiae]
Length = 1162
Score = 47.0 bits (110), Expect = 4e-04
Identities = 85/371 (22%), Positives = 151/371 (39%), Gaps = 46/371 (12%)
Query: 12 KKRENALFDHLDSL------KSLLEKTHWEKEKFTPPINEKELNRQL--KEVRWFNKETP 63
K+ ++ L ++L+ + K L+E+ + E EKE ++ +E
Sbjct: 61 KESDDGLLEYLEDIIGTANYKPLIEERMGQIENLNEVCLEKENRFEIVDREKNSLESGKE 120
Query: 64 TSKNTYKKIQKLAVYKSPLIK-DYLYTIKKLFATQKKIIDLEKNYKD------------- 109
T+ +K ++L + +S L + L + KL +T +KI K+ +D
Sbjct: 121 TALEFLEKEKQLTLLRSKLFQFKLLQSNSKLASTLEKISSSNKDLEDEKMKFQESLKKVD 180
Query: 110 -LRALKEEFSKDLETDLSHSKKRFELYTRLKSMSKVFI---SKSIVKNLEKIALDFKSDR 165
++A ++E KD + S +K L R ++V + +K++V +EK KS +
Sbjct: 181 EIKAQRKEI-KDRISSCSSKEKTLVLERRELEGTRVSLEERTKNLVSKMEKAEKTLKSTK 239
Query: 166 HSISQRAFEFFKYMNYQNLSLTDKGNMFLVAKFFKDSALLVNI---ARFEMKKIDDSV-- 220
HSIS+ + Q T+ ++ + + K+ ++L +I + + K I +
Sbjct: 240 HSISEAENMLEELRGQQTEHETEIKDLTQLLE--KERSILDDIKLSLKDKTKNISAEIIR 297
Query: 221 --KNSNPQD-NLLDKQVWLNLLEHLKRLEEENYCFAKKRKEFLE-------TRAMELSKD 270
K P D L +K+ + L E L EE KK E LE T EL +D
Sbjct: 298 HEKELEPWDLQLQEKESQIQLAESELSLLEETQAKLKKNVETLEEKILAKKTHKQEL-QD 356
Query: 271 LKFLTQANENDLPIYERGQRDKIIKRCEKSLNFLQKELQCFKTLLKSASIALENLQNNHQ 330
L + N L ER Q +K L +QK L + A +L QN +
Sbjct: 357 LILDLKKKLNSLK-DERSQGEKNFTSAHLKLKEMQKVLNAHRQRAMEARSSLSKAQNKSK 415
Query: 331 ITAVTQDTQEN 341
+ Q++
Sbjct: 416 VLTALSRLQKS 426
>ref|NP_013187.1| (NC_001144) Stable Maintenance of Chromosomes; Smc4p [Saccharomyces
cerevisiae]
pir||S64918 hypothetical protein YLR086w - yeast (Saccharomyces cerevisiae)
gb|AAB67590.1| (U53880) Ylr086wp [Saccharomyces cerevisiae]
emb|CAA97646.1| (Z73258) ORF YLR086w [Saccharomyces cerevisiae]
Length = 1418
Score = 47.0 bits (110), Expect = 4e-04
Identities = 85/371 (22%), Positives = 151/371 (39%), Gaps = 46/371 (12%)
Query: 12 KKRENALFDHLDSL------KSLLEKTHWEKEKFTPPINEKELNRQL--KEVRWFNKETP 63
K+ ++ L ++L+ + K L+E+ + E EKE ++ +E
Sbjct: 317 KESDDGLLEYLEDIIGTANYKPLIEERMGQIENLNEVCLEKENRFEIVDREKNSLESGKE 376
Query: 64 TSKNTYKKIQKLAVYKSPLIK-DYLYTIKKLFATQKKIIDLEKNYKD------------- 109
T+ +K ++L + +S L + L + KL +T +KI K+ +D
Sbjct: 377 TALEFLEKEKQLTLLRSKLFQFKLLQSNSKLASTLEKISSSNKDLEDEKMKFQESLKKVD 436
Query: 110 -LRALKEEFSKDLETDLSHSKKRFELYTRLKSMSKVFI---SKSIVKNLEKIALDFKSDR 165
++A ++E KD + S +K L R ++V + +K++V +EK KS +
Sbjct: 437 EIKAQRKEI-KDRISSCSSKEKTLVLERRELEGTRVSLEERTKNLVSKMEKAEKTLKSTK 495
Query: 166 HSISQRAFEFFKYMNYQNLSLTDKGNMFLVAKFFKDSALLVNI---ARFEMKKIDDSV-- 220
HSIS+ + Q T+ ++ + + K+ ++L +I + + K I +
Sbjct: 496 HSISEAENMLEELRGQQTEHETEIKDLTQLLE--KERSILDDIKLSLKDKTKNISAEIIR 553
Query: 221 --KNSNPQD-NLLDKQVWLNLLEHLKRLEEENYCFAKKRKEFLE-------TRAMELSKD 270
K P D L +K+ + L E L EE KK E LE T EL +D
Sbjct: 554 HEKELEPWDLQLQEKESQIQLAESELSLLEETQAKLKKNVETLEEKILAKKTHKQEL-QD 612
Query: 271 LKFLTQANENDLPIYERGQRDKIIKRCEKSLNFLQKELQCFKTLLKSASIALENLQNNHQ 330
L + N L ER Q +K L +QK L + A +L QN +
Sbjct: 613 LILDLKKKLNSLK-DERSQGEKNFTSAHLKLKEMQKVLNAHRQRAMEARSSLSKAQNKSK 671
Query: 331 ITAVTQDTQEN 341
+ Q++
Sbjct: 672 VLTALSRLQKS 682
>ref|NP_003557.1| (NM_003566) early endosome antigen 1, 162kD; early
endosome-associated protein [Homo sapiens]
pir||A57013 early endosome antigen 1 - human
gb|AAA79121.1| (L40157) endosome-associated protein [Homo sapiens]
Length = 1410
Score = 45.8 bits (107), Expect = 8e-04
Identities = 82/363 (22%), Positives = 150/363 (40%), Gaps = 36/363 (9%)
Query: 9 ESLKKRENA-LFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNKETPTSKN 67
E+ K + A L +HLD+ ++ L+ H E K T +++ Q K+ E+ +
Sbjct: 655 EAAKTAQRADLQNHLDTAQNALQDKHQELNKITTQLDQVTAKLQDKQEHCSQLESHLKEY 714
Query: 68 TYKKI---QKLAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYK---DLRALKEEFSKDL 121
K + QK + + K +++ + ++ + DL++ + DL E SK L
Sbjct: 715 KEKYLSLEQKTEELEGQIKKLEADSLEVKASKEQALQDLQQQRQLNTDLELRATELSKQL 774
Query: 122 ETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALD---FKSDRHSISQRA-FEFFK 177
E + K TRL K +SI + L K + K D ++SQ + +
Sbjct: 775 EME-----KEIVSSTRLDLQKKSEALESIKQKLTKQEEEKQILKQDFETLSQETKIQHEE 829
Query: 178 YMNYQNLSLTDKGNMFLVAKFFKDSALL-VNIARFEMKKIDDSVKNSNPQ---DNLLDKQ 233
N ++T+ + K K++ + ++ + ++ K+ DS+KNS + +N K
Sbjct: 830 LNNRIQTTVTELQKV----KMEKEALMTELSTVKDKLSKVSDSLKNSKSEFEKENQKGKA 885
Query: 234 VWLNL------LEHLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYER 287
L+L L+H +++ EN +K + + E S LK + + L
Sbjct: 886 AILDLEKTCKELKHQLQVQMENTLKEQKELKKSLEKEKEASHQLKLELNSMQEQLI---- 941
Query: 288 GQRDKIIKRCEKSLNFLQKELQCFKTLLKSASIALENLQNNHQITAVTQDTQENTNALKN 347
Q +K+ EK LQ + K + +E LQ +I AV Q T+ +
Sbjct: 942 -QAQNTLKQNEKEEQQLQGNINELKQSSEQKKKQIEALQGELKI-AVLQKTELENKLQQQ 999
Query: 348 TTQ 350
TQ
Sbjct: 1000 LTQ 1002
>gb|AAF27715.1|AF071820_1 (AF071820) PspA [Streptococcus pneumoniae]
Length = 461
Score = 45.8 bits (107), Expect = 8e-04
Identities = 71/328 (21%), Positives = 124/328 (37%), Gaps = 67/328 (20%)
Query: 3 SATSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNKET 62
SA +IE K+++ K +K + E+ K P E +Q E K+
Sbjct: 118 SAEKKIEEAKRKQ----------KEANKKFNEEQAKVVPEAKELAATKQKAEKA--KKDA 165
Query: 63 PTSKNTYKK-IQKLAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKDL 121
+K Y K +Q++ V K+ +++ KK+ Q K+ DLEK + E +K++
Sbjct: 166 EVAKEKYDKAVQEVEVEKNKILEQDAENEKKIDVLQNKVADLEKGIAPYQNKVAELNKEI 225
Query: 122 ETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRAFEFFKYMNY 181
L + LK + + I + LE+ D K++ +
Sbjct: 226 A----------RLQSDLKDAEENNVEDYIKEGLEQAIADKKAELAT------------TQ 263
Query: 182 QNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLEH 241
QN+ T K + A E++K+ ++ + LDK+
Sbjct: 264 QNIDKTQKD---------------LEDAELELEKVLATLDPEGKTQDELDKEA------- 301
Query: 242 LKRLEEENYCFAKKRKEFLETRAMELSKDL----KFLTQANENDLPIYERGQRDKIIKRC 297
E+ N + + LE + EL K++ L A EN++ Y + +K +
Sbjct: 302 ---AEDANIEALQNKVADLENKVAELDKEVTRLQSDLKDAEENNVEDYVKEGLEKALTDK 358
Query: 298 EKSLNFLQKELQCFKTLLKSASIALENL 325
+ LN QK L T K+ AL L
Sbjct: 359 KVELNNTQKALD---TAPKALDTALNEL 383
>ref|NP_603419.1| (NC_003454) Exonuclease SBCC [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL94718.1| (AE010564) Exonuclease SBCC [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 921
Score = 45.4 bits (106), Expect = 0.001
Identities = 80/384 (20%), Positives = 164/384 (41%), Gaps = 62/384 (16%)
Query: 6 SQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPIN-----EKELNRQLKEV----- 55
+ IE L+ L + + +L+ + K +KE I+ E++L+ +LK+
Sbjct: 323 NNIEKLELSNKNLKNDIINLEENISKNSEKKENLESEISNLKIKEEDLDLKLKKYISLLD 382
Query: 56 ---RWFNKETPTSKNTYKKIQKLAVYKSPLI--KDYLYTIKKLFATQKKIIDLEKNYKDL 110
+ N + ++ KK ++ + K LI KD TI + ++K+ + ++ K+L
Sbjct: 383 ELEKLENFKDKKLEDKLKKTTEIDILKKELISKKDLFKTIN-IEIIEEKLSNFQELEKEL 441
Query: 111 RALKEE---FSKDLETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHS 167
+ L+E+ F +++T SK+ L F+++ +K A D+ S + S
Sbjct: 442 KLLEEQKIIFEIEIKTLKKSSKE-------LSDKICPFLNEKCQNLEDKEAEDYFSSKIS 494
Query: 168 ISQRAFEFFKYMNYQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNS--NP 225
I + E K ++ +K + + F+D +K ++ S+KN N
Sbjct: 495 IKKEDLENLKK------NIKEKTQILVEKVVFEDKKKQYFELEKSIKDLEISLKNEEINL 548
Query: 226 QDNLLD-KQVWLNLLEHLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPI 284
++ LD K + +++ + ++ E +N +++K LE L+ D K EN I
Sbjct: 549 KEIELDIKNLDIDIQKLIENQEFQNSQMLREKKTELEVELRNLNLDEK-----RENLKNI 603
Query: 285 YERGQ--RDKIIKRCEKSLNFLQKELQCFKTLLKSASIALENLQNNHQITAVTQDTQENT 342
E + ++KI+K + S+ +E+ F +K +D +N
Sbjct: 604 LENLEIEKEKILKN-QNSIKSNLEEIDVFSKKIK-------------------EDINKNI 643
Query: 343 NALKNTTQDFNKTTNEPTNPNNNY 366
++K+ + F ++ NP N Y
Sbjct: 644 ESIKSEIKTFENKLDDLKNPYNEY 667
>ref|NP_010225.1| (NC_001136) involved intracellular protein transport, coiled-coil
protein necessary for protein transport from ER to Golgi;
Uso1p [Saccharomyces cerevisiae]
pir||S67593 transport protein USO1 - yeast (Saccharomyces cerevisiae)
emb|CAA98621.1| (Z74106) ORF YDL058w [Saccharomyces cerevisiae]
Length = 1790
Score = 45.4 bits (106), Expect = 0.001
Identities = 76/366 (20%), Positives = 167/366 (44%), Gaps = 51/366 (13%)
Query: 6 SQIESLKKR-ENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNKETPT 64
SQI LK++ E A + +++ + E T +E K L +L+ + T
Sbjct: 1054 SQISLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELET------KLET 1107
Query: 65 SKNTYKKIQK----LAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKD 120
S+ K++++ L K L K+ T ++L + + + LEK ++DL A +++ +
Sbjct: 1108 SEKALKEVKENEEHLKEEKIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKKYEEQ 1167
Query: 121 L-ETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRAFEFFKYM 179
+ + ++++ +L + S + ++SI K +++ + K+ + + +++
Sbjct: 1168 IANKERQYNEEISQLNDEITSTQQE--NESIKKKNDELEGEVKAMKSTSEEQS------- 1218
Query: 180 NYQNLSLTDKGNMFLVAKFFK------DSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQ 233
NL ++ + L K K +++LL +I E + + +K + N +K+
Sbjct: 1219 ---NLKKSEIDALNLQIKELKKKNETNEASLLESIKSVESETV--KIKELQDECNFKEKE 1273
Query: 234 VWLNLLEHLKRLEEENYCF------AKKRKEFLETRAMELSKDLKFLT------QANEND 281
V L + LK E++N + ++K KE L+ + EL L+ +T + +E++
Sbjct: 1274 V-SELEDKLKASEDKNSKYLELQKESEKIKEELDAKTTELKIQLEKITNLSKAKEKSESE 1332
Query: 282 LPIYERGQRDKIIKRCEKSLNFLQKELQCFKTLLKSASIALENLQNNHQITAVTQDTQEN 341
L ++ ++ K E+ L L+ E+Q +K+ + E N + +TQ+ E
Sbjct: 1333 LSRLKKTSSEE-RKNAEEQLEKLKNEIQ-----IKNQAFEKERKLLNEGSSTITQEYSEK 1386
Query: 342 TNALKN 347
N L++
Sbjct: 1387 INTLED 1392
Score = 43.5 bits (101), Expect = 0.004
Identities = 76/352 (21%), Positives = 156/352 (43%), Gaps = 58/352 (16%)
Query: 6 SQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKE-LNRQLKEVRWFNKETPT 64
S +E+ K D + L+ +LE +KE T + K +++Q ++ K T
Sbjct: 793 SILETELKNVRDSLDEMTQLRDVLETK--DKENQTALLEYKSTIHKQEDSIKTLEKGLET 850
Query: 65 SKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKDLETD 124
+ KK + + K K LFA +++ +E+N K+L+ K+ +++
Sbjct: 851 ILSQKKKAED-GINKMG---------KDLFALSREMQAVEENCKNLQKEKD------KSN 894
Query: 125 LSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIAL---DFKSDRHSISQRAFEF-FKYMN 180
++H K+ L + +K+ K+I +NLE++ + + ++ IS+ E+ ++ +
Sbjct: 895 VNHQKETKSLKEDI--AAKITEIKAINENLEEMKIQCNNLSKEKEHISKELVEYKSRFQS 952
Query: 181 YQNL--SLTDKGNMFLVAKFFKDSALLVN--IARFEMKKIDDSVKNSNPQDNLLDKQVWL 236
+ NL LT+K + +A +KD I E K + S++ SN Q
Sbjct: 953 HDNLVAKLTEK--LKSLANNYKDMQAENESLIKAVEESKNESSIQLSNLQ---------- 1000
Query: 237 NLLEHLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIKR 296
N ++ + + E+EN+ + + +E +L K + L Q E +II +
Sbjct: 1001 NKIDSMSQ-EKENF---QIERGSIEKNIEQLKKTISDLEQTKE------------EIISK 1044
Query: 297 CEKSLNFLQKELQCFKTLLKSASIAL-ENLQNNHQITAVTQDTQENTNALKN 347
+ S + + ++ K L++A+ A EN+ ++T ++ + A KN
Sbjct: 1045 SDSSKDEYESQISLLKEKLETATTANDENVNKISELTKTREELEAELAAYKN 1096
>ref|NP_213687.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
sp|O67124|RA50_AQUAE Probable DNA double-strand break repair rad50 ATPase
pir||A70387 conserved hypothetical protein aq_1006 - Aquifex aeolicus
gb|AAC07092.1| (AE000718) hypothetical protein [Aquifex aeolicus]
Length = 978
Score = 45.4 bits (106), Expect = 0.001
Identities = 72/304 (23%), Positives = 125/304 (40%), Gaps = 63/304 (20%)
Query: 9 ESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKE---------------LNRQLK 53
E+LKK L D+ + K +LEKT E+ + E E L R+L
Sbjct: 185 EALKKEYELLKDYTPTKKEVLEKTLKNLEEELKELKETEEKLRQELKKAEEKDSLERELS 244
Query: 54 EVRWFNKETPTSKNTYKKIQKL--AVYKSPLIKDYLYTIKKLFATQKKIIDLE----KNY 107
+V KE +N K+++KL + S + Y+ K++ KK+ +L+ K
Sbjct: 245 QVVTKLKEL---ENLEKEVEKLREKLEFSRKVAPYVPIAKRIEEIDKKLTELKVRKNKLT 301
Query: 108 KDLRALKEE--FSKDLETDLSHSKKRF--------ELYTRLKSMSKVFISKSIVKNLEKI 157
K+L LK+E F+++ + K++F EL RLK + ++ K I+K L ++
Sbjct: 302 KELAVLKDELSFAQEELNRIEAEKEKFKEEKEREKELEHRLKKLQEI---KEILKELSQL 358
Query: 158 ALDFKSDRHSISQRAFEFFKYMNYQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKID 217
+ K Q EF ++LS + LVA+ +++KI
Sbjct: 359 SSSLKEKEREYEQAKQEF------EDLSERVEKGKKLVAE-----------TEEKLEKIK 401
Query: 218 DSVKNSNPQDNLLDKQVWLNLLEHLKRLEE---------ENYCFAKKRKEFLETRAMELS 268
+ + +++ + L LK L+E + Y KK E + EL
Sbjct: 402 ELFSEEEYTSLKMKERLLVELQRKLKELKEKEGQLENLTQKYKEKKKVHEKVLNELKELE 461
Query: 269 KDLK 272
++LK
Sbjct: 462 RELK 465
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1
emb|CAA38253.1| (X54378) Uso1 protein [Saccharomyces cerevisiae]
Length = 1790
Score = 45.4 bits (106), Expect = 0.001
Identities = 76/366 (20%), Positives = 167/366 (44%), Gaps = 51/366 (13%)
Query: 6 SQIESLKKR-ENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNKETPT 64
SQI LK++ E A + +++ + E T +E K L +L+ + T
Sbjct: 1054 SQISLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELET------KLET 1107
Query: 65 SKNTYKKIQK----LAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKD 120
S+ K++++ L K L K+ T ++L + + + LEK ++DL A +++ +
Sbjct: 1108 SEKALKEVKENEEHLKEEKIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKKYEEQ 1167
Query: 121 L-ETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRAFEFFKYM 179
+ + ++++ +L + S + ++SI K +++ + K+ + + +++
Sbjct: 1168 IANKERQYNEEISQLNDEITSTQQE--NESIKKKNDELEGEVKAMKSTSEEQS------- 1218
Query: 180 NYQNLSLTDKGNMFLVAKFFK------DSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQ 233
NL ++ + L K K +++LL +I E + + +K + N +K+
Sbjct: 1219 ---NLKKSEIDALNLQIKELKKKNETNEASLLESIKSVESETV--KIKELQDECNFKEKE 1273
Query: 234 VWLNLLEHLKRLEEENYCF------AKKRKEFLETRAMELSKDLKFLT------QANEND 281
V L + LK E++N + ++K KE L+ + EL L+ +T + +E++
Sbjct: 1274 V-SELEDKLKASEDKNSKYLELQKESEKIKEELDAKTTELKIQLEKITNLSKAKEKSESE 1332
Query: 282 LPIYERGQRDKIIKRCEKSLNFLQKELQCFKTLLKSASIALENLQNNHQITAVTQDTQEN 341
L ++ ++ K E+ L L+ E+Q +K+ + E N + +TQ+ E
Sbjct: 1333 LSRLKKTSSEE-RKNAEEQLEKLKNEIQ-----IKNQAFEKERKLLNEGSSTITQEYSEK 1386
Query: 342 TNALKN 347
N L++
Sbjct: 1387 INTLED 1392
Score = 43.5 bits (101), Expect = 0.004
Identities = 76/352 (21%), Positives = 156/352 (43%), Gaps = 58/352 (16%)
Query: 6 SQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKE-LNRQLKEVRWFNKETPT 64
S +E+ K D + L+ +LE +KE T + K +++Q ++ K T
Sbjct: 793 SILETELKNVRDSLDEMTQLRDVLETK--DKENQTALLEYKSTIHKQEDSIKTLEKGLET 850
Query: 65 SKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKDLETD 124
+ KK + + K K LFA +++ +E+N K+L+ K+ +++
Sbjct: 851 ILSQKKKAED-GINKMG---------KDLFALSREMQAVEENCKNLQKEKD------KSN 894
Query: 125 LSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIAL---DFKSDRHSISQRAFEF-FKYMN 180
++H K+ L + +K+ K+I +NLE++ + + ++ IS+ E+ ++ +
Sbjct: 895 VNHQKETKSLKEDI--AAKITEIKAINENLEEMKIQCNNLSKEKEHISKELVEYKSRFQS 952
Query: 181 YQNL--SLTDKGNMFLVAKFFKDSALLVN--IARFEMKKIDDSVKNSNPQDNLLDKQVWL 236
+ NL LT+K + +A +KD I E K + S++ SN Q
Sbjct: 953 HDNLVAKLTEK--LKSLANNYKDMQAENESLIKAVEESKNESSIQLSNLQ---------- 1000
Query: 237 NLLEHLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIKR 296
N ++ + + E+EN+ + + +E +L K + L Q E +II +
Sbjct: 1001 NKIDSMSQ-EKENF---QIERGSIEKNIEQLKKTISDLEQTKE------------EIISK 1044
Query: 297 CEKSLNFLQKELQCFKTLLKSASIAL-ENLQNNHQITAVTQDTQENTNALKN 347
+ S + + ++ K L++A+ A EN+ ++T ++ + A KN
Sbjct: 1045 SDSSKDEYESQISLLKEKLETATTANDENVNKISELTKTREELEAELAAYKN 1096
>ref|NP_048227.1| (NC_001993) ORF MSV156 hypothetical protein [Melanoplus sanguinipes
entomopoxvirus]
pir||T28317 ORF MSV156 hypothetical protein - Melanoplus sanguinipes
entomopoxvirus
gb|AAC97677.1| (AF063866) ORF MSV156 hypothetical protein [Melanoplus sanguinipes
entomopoxvirus]
Length = 1127
Score = 45.4 bits (106), Expect = 0.001
Identities = 69/328 (21%), Positives = 128/328 (38%), Gaps = 45/328 (13%)
Query: 52 LKEVRWFNKETPTSKNTYKKIQKLAVYKSPLIK--DYLYTIKKLFATQKKIIDLEKNYK- 108
L +++ +K T Y KI + Y K DY ++ L +I K K
Sbjct: 40 LNNIKFSDKITNEIIKNYNKIVEKIFYMHNQFKINDYNIILQYLIEYNNEINKCIKENKF 99
Query: 109 -------DLRALKEEFSKDLETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDF 161
++ K+ + DL+ + KK EL ++ + V I N+ I
Sbjct: 100 PCKNPLYNITYKKKLYIYDLDYE---EKKDKELVINIEQKNAVDKINDIKNNVNNI---- 152
Query: 162 KSDRHSISQRAFEFFKYMNYQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVK 221
SD +I +N + L L L+ + +K+ +N E K ID+ K
Sbjct: 153 HSDNETIITGKETLIDILN-KLLKLVSSDEKQLIEQIYKN----INNKEIEFKNIDNVQK 207
Query: 222 NSNPQDNLLDKQVWLNLLEHLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANEND 281
N + + L+K + + E +K+ EE N KK++E ++ + N+ +
Sbjct: 208 EINKKQDELNKLLDESKKEFIKKQEELNKTIDKKQEELIK--------------KLNDKE 253
Query: 282 LPIYERGQRDKIIKRCEKSLNFLQKELQCFKTLLKSASIALENLQN---NHQITAVTQDT 338
+ + ++ K++ + +N L + ++ L + NLQN N T + D
Sbjct: 254 IN-FNIDEKQKLLDQINSKINTLNENIKGVMNLYTETKNKISNLQNEILNKDSTIKSLDE 312
Query: 339 Q-----ENTNALKNTTQDFNKTTNEPTN 361
+ E + N T +NK+ + TN
Sbjct: 313 KQKLLDELDKNINNITSLYNKSNTKITN 340
>emb|CAA98620.1| (Z74105) ORF YDL058w [Saccharomyces cerevisiae]
Length = 1268
Score = 45.4 bits (106), Expect = 0.001
Identities = 76/366 (20%), Positives = 167/366 (44%), Gaps = 51/366 (13%)
Query: 6 SQIESLKKR-ENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNKETPT 64
SQI LK++ E A + +++ + E T +E K L +L+ + T
Sbjct: 532 SQISLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNLKNELET------KLET 585
Query: 65 SKNTYKKIQK----LAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKD 120
S+ K++++ L K L K+ T ++L + + + LEK ++DL A +++ +
Sbjct: 586 SEKALKEVKENEEHLKEEKIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKKYEEQ 645
Query: 121 L-ETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRAFEFFKYM 179
+ + ++++ +L + S + ++SI K +++ + K+ + + +++
Sbjct: 646 IANKERQYNEEISQLNDEITSTQQE--NESIKKKNDELEGEVKAMKSTSEEQS------- 696
Query: 180 NYQNLSLTDKGNMFLVAKFFK------DSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQ 233
NL ++ + L K K +++LL +I E + + +K + N +K+
Sbjct: 697 ---NLKKSEIDALNLQIKELKKKNETNEASLLESIKSVESETV--KIKELQDECNFKEKE 751
Query: 234 VWLNLLEHLKRLEEENYCF------AKKRKEFLETRAMELSKDLKFLT------QANEND 281
V L + LK E++N + ++K KE L+ + EL L+ +T + +E++
Sbjct: 752 V-SELEDKLKASEDKNSKYLELQKESEKIKEELDAKTTELKIQLEKITNLSKAKEKSESE 810
Query: 282 LPIYERGQRDKIIKRCEKSLNFLQKELQCFKTLLKSASIALENLQNNHQITAVTQDTQEN 341
L ++ ++ K E+ L L+ E+Q +K+ + E N + +TQ+ E
Sbjct: 811 LSRLKKTSSEE-RKNAEEQLEKLKNEIQ-----IKNQAFEKERKLLNEGSSTITQEYSEK 864
Query: 342 TNALKN 347
N L++
Sbjct: 865 INTLED 870
Score = 43.5 bits (101), Expect = 0.004
Identities = 76/352 (21%), Positives = 156/352 (43%), Gaps = 58/352 (16%)
Query: 6 SQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKE-LNRQLKEVRWFNKETPT 64
S +E+ K D + L+ +LE +KE T + K +++Q ++ K T
Sbjct: 271 SILETELKNVRDSLDEMTQLRDVLETK--DKENQTALLEYKSTIHKQEDSIKTLEKGLET 328
Query: 65 SKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKDLETD 124
+ KK + + K K LFA +++ +E+N K+L+ K+ +++
Sbjct: 329 ILSQKKKAED-GINKMG---------KDLFALSREMQAVEENCKNLQKEKD------KSN 372
Query: 125 LSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIAL---DFKSDRHSISQRAFEF-FKYMN 180
++H K+ L + +K+ K+I +NLE++ + + ++ IS+ E+ ++ +
Sbjct: 373 VNHQKETKSLKEDI--AAKITEIKAINENLEEMKIQCNNLSKEKEHISKELVEYKSRFQS 430
Query: 181 YQNL--SLTDKGNMFLVAKFFKDSALLVN--IARFEMKKIDDSVKNSNPQDNLLDKQVWL 236
+ NL LT+K + +A +KD I E K + S++ SN Q
Sbjct: 431 HDNLVAKLTEK--LKSLANNYKDMQAENESLIKAVEESKNESSIQLSNLQ---------- 478
Query: 237 NLLEHLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIKR 296
N ++ + + E+EN+ + + +E +L K + L Q E +II +
Sbjct: 479 NKIDSMSQ-EKENF---QIERGSIEKNIEQLKKTISDLEQTKE------------EIISK 522
Query: 297 CEKSLNFLQKELQCFKTLLKSASIAL-ENLQNNHQITAVTQDTQENTNALKN 347
+ S + + ++ K L++A+ A EN+ ++T ++ + A KN
Sbjct: 523 SDSSKDEYESQISLLKEKLETATTANDENVNKISELTKTREELEAELAAYKN 574
>ref|NP_343627.1| (NC_002754) Purine NTPase [Sulfolobus solfataricus]
sp|Q97WH0|RA50_SULSO DNA double-strand break repair rad50 ATPase
gb|AAK42417.1| (AE006829) Purine NTPase [Sulfolobus solfataricus]
Length = 864
Score = 45.1 bits (105), Expect = 0.001
Identities = 77/351 (21%), Positives = 150/351 (41%), Gaps = 52/351 (14%)
Query: 7 QIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNKETPTSK 66
+I++L+KR + D D + ++ + K T I E ELN + + K+T
Sbjct: 212 EIKNLEKRIKDIKDQFDEYEK--KRNQYLKLTTTLKIKEGELNELNRSIEELRKQTENMD 269
Query: 67 NTYKKIQKLAVYKSPLIKDYLYTI--KKLFATQKKIIDLEK---NYKDLRALKEEFS--- 118
K+I +L ++ +K Y + K +I+LEK Y+ KEE
Sbjct: 270 QLEKEINELENLRNIKLKFEKYEVLAKSHTEMSANVINLEKEIEEYEKAIRRKEELEPKY 329
Query: 119 ---KDLETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRAFEF 175
K+LE L + +++ Y +LK S + ++ + LEK A + +D ++
Sbjct: 330 LKYKELERKLEELQPKYQQYLKLK--SDLDSKLNLKERLEKDASELSNDIDKVNSLE--- 384
Query: 176 FKYMNYQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNSNPQ-----DNLL 230
Q + T K + L A+ K +L+ E +I +++ + L
Sbjct: 385 ------QKVEETRKKQLNLRAQLAKVESLI-----SEKNEIINNISQVEGETCPVCGRPL 433
Query: 231 DKQVWLNLLEHLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQR 290
D+ EH +++ +E AK LE EL ++LK +T N+L ER R
Sbjct: 434 DE-------EHKQKIIKE----AKSYILQLELNKNELEEELKKIT----NELNKIEREYR 478
Query: 291 DKIIKRCEKSLNFLQKELQCFKTLLKSASIALENLQN-NHQITAVTQDTQE 340
+ + S + + ++L+ +++ +E+L+N + +I + ++ +E
Sbjct: 479 R--LSNNKASYDNVMRQLKKLNEEIENLHSEIESLKNIDEEIKKINEEVKE 527
>ref|NP_224152.1| (NC_000921) DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N)
[Helicobacter pylori J99]
sp|Q9ZJ80|RECN_HELPJ DNA repair protein recN (Recombination protein N)
pir||B71807 DNA repair protein(recombination protein n) - Helicobacter pylori
(strain J99)
gb|AAD07019.1| (AE001566) DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N)
[Helicobacter pylori J99]
Length = 522
Score = 45.1 bits (105), Expect = 0.001
Identities = 48/194 (24%), Positives = 78/194 (39%), Gaps = 35/194 (18%)
Query: 53 KEVRWFNKETPTSKNTYKKIQKLAVYKSP----------------LIKDYLYTIKKLF-- 94
++ R+F +T SKNT K + K + + L+ Y+ K F
Sbjct: 96 EKTRYFLNQTSLSKNTLKALLKGLIKRLSNDRFSQNELNDILMLSLLDGYIQNKNKAFSP 155
Query: 95 ---ATQKKIIDLEKNYKDLRAL--KEEFSKDLETDLSHSKKRFEL-------YTRLKSMS 142
A + K LEK ++ R+L K+ F KDLE L+ K + E Y RL
Sbjct: 156 LLDALETKFTRLEKLERERRSLEDKKRFQKDLEERLNFEKMKLERLDLKEDEYERLLEQK 215
Query: 143 KVFISKSIVKNLEKIALDFKSDRHSISQRAFEFFKYMNYQNLSLTDKGNMFLVAKFFKDS 202
K+ SK + + +ALD + H I+ + +L + G A K+
Sbjct: 216 KLLSSKEKLNDKIALALDVLENTHKITHALESVGHSAEFLKSALLEAG-----ALLEKEQ 270
Query: 203 ALLVNIARFEMKKI 216
A L R +++K+
Sbjct: 271 AKLEECERLDIEKV 284
>pir||S66520 tropomyosin, fast muscle - Atlantic salmon
gb|AAB36559.1| (L25609) fast myotomal muscle tropomyosin [Salmo salar]
Length = 284
Score = 44.7 bits (104), Expect = 0.002
Identities = 55/263 (20%), Positives = 126/263 (46%), Gaps = 18/263 (6%)
Query: 73 QKLAVYKSPLIKDYLYTI-KKLFATQKKIIDLEKNYKDLRA---LKEEFSKDLETDLSHS 128
+K A KS ++D L + KKL T+ ++ ++ KD + + E+ + D E D++
Sbjct: 29 KKAAEDKSKQLEDDLVALQKKLKGTEDELDKYSESLKDAQEKLEVAEKTATDAEADVASL 88
Query: 129 KKRFELYTRLKSMSKVFISKSIVK--NLEKIALDFKSDRHSISQRAFEFFKYMNYQNLSL 186
+R +L ++ ++ ++ K EK A + + I RA + + M Q++ L
Sbjct: 89 NRRIQLVEEELDRAQERLATALTKLEEAEKAADESERGMKVIENRASKDEEKMELQDIQL 148
Query: 187 TDKGNMFLVA-KFFKDSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLEHLKRL 245
+ ++ A + +++ A + I ++++ ++ + S + + L++++ + +LK L
Sbjct: 149 KEAKHIAEEADRKYEEVARKLVIIESDLERTEERAELSEGKCSELEEEL-KTVTNNLKSL 207
Query: 246 EEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIKRCEKSLNFLQ 305
E + +++K ++ E ++K LT + E +R + + EK+++ L+
Sbjct: 208 EAQAEKYSQKEDKYEE--------EIKVLTDKLKEAETRAEFAERS--VAKLEKTIDDLE 257
Query: 306 KELQCFKTLLKSASIALENLQNN 328
EL K K+ S L+N N+
Sbjct: 258 DELYAQKLKYKAISEELDNALND 280
>emb|CAB62858.1| (AL035475) hypothetical protein MAL4P2.17 [Plasmodium falciparum
3D7]
Length = 1111
Score = 44.7 bits (104), Expect = 0.002
Identities = 86/376 (22%), Positives = 151/376 (39%), Gaps = 65/376 (17%)
Query: 18 LFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNKETPTSKNTYKKIQKLAV 77
LFD ++ ++ EK K+K IN+ LN ++ + N + KN K + K +
Sbjct: 650 LFDMAKNINNIKEK----KKKLVIDINQ--LNCEVDNI---NIKKENLKNKKKILLKSKM 700
Query: 78 YKSPLIKDYLYTIKKLFATQKKIIDLEKNYK-DLRALKEEFSKDLETDLSHSKKRFELYT 136
+K+ + +L ++ + L +N+K D+ LK + + +K + L
Sbjct: 701 LNE--VKNTINEFDELLLSENNNLKLLENFKQDMNELKTKHIMLKDKKEKLKRKLYALEN 758
Query: 137 RLKSMSKVFISKSIVKNL--------EKIALDFKSDRHSISQRAFEFFKYMNYQNLSLTD 188
+L F+ I +N+ ++I D K ++H I Q N N S+
Sbjct: 759 KLLKSEICFVK--ISQNIKYDQKLQEQRIEQDEKKEKHQIIQE--------NINNESI-- 806
Query: 189 KGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLEHLKRLEEE 248
+++ +N A E K IDD S+ DN D + LN+ E ++ L++E
Sbjct: 807 -----------QNNVHDINNAN-EEKPIDDIFIFSDESDNYKDDIINLNMNEIIQELKDE 854
Query: 249 NYCF----------AKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIKRCE 298
+ + K E +E E S++ K + +END+ + + D I +
Sbjct: 855 EKSYNEEGTSQTDNSDKETEQMENSEAETSENDKDENKTSENDINENKTSEND--INENK 912
Query: 299 KSLNFLQKELQCFKTLLKSASI-----ALENLQNNHQITAVTQDTQENTNALKNTTQDFN 353
S N KE K SI E++QN+ Q+ + A++N D N
Sbjct: 913 TSENNKNKEDSIQNDKNKEESIQNDKNKEESIQNDKNKEEAIQNDKNKEEAIQN---DKN 969
Query: 354 KTTNEPTNPNNNYGMD 369
K E NN M+
Sbjct: 970 KDLKEYME-NNEQSMN 984
>emb|CAB64662.1| (AJ249991) myosin heavy chain [Mytilus galloprovincialis]
Length = 1705
Score = 44.7 bits (104), Expect = 0.002
Identities = 73/373 (19%), Positives = 149/373 (39%), Gaps = 44/373 (11%)
Query: 11 LKKRENALFDHLDS---LKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNKETPTSKN 67
+K+ E L D D+ L+ + K E ++ I + E + E +E T N
Sbjct: 683 IKEMEERLLDEEDAAAELEVIKRKMEGENDELKKDIEDLENSLAKSE-----QEKTTKDN 737
Query: 68 TYKKIQKLAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKDLETDLSH 127
K +Q + +I K + K+ +D + +D + + LE+ L
Sbjct: 738 QIKTLQDEMAQQDDIISKLNRDKKGMDEDHKRTLDALQKEEDKVNHLSKLKQKLESTLDE 797
Query: 128 SKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRAFEFFKYMNYQNLSLT 187
+ E +++ + K KI D K+ + ++ E K +
Sbjct: 798 LEDGLEREKKVRG--------DVEKAKRKIEQDLKATQEAVED--LERVKRGLEETNRKK 847
Query: 188 DKGNMFLVAKFFKDSALLVNIAR------FEMKKIDDSVKNSNPQDNLLDKQ---VWLNL 238
D N L ++ D +L+ + R ++++++ ++ +DKQ + L
Sbjct: 848 DAENAALSSRLEDDQSLIAQLQRKIKELLARIEELEEELEAERAARTKVDKQRAEIAREL 907
Query: 239 LEHLKRLEEENYCFA------KKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDK 292
+ +RL+E + KKR++ L ++L +DL+ T +E + + Q+D
Sbjct: 908 EDLSERLDEAGGATSAQIELNKKREQEL----LKLRRDLEETTLQHEAQVSSLRKKQQDA 963
Query: 293 I------IKRCEKSLNFLQKELQCFKTLLKSASIALENLQNNHQITAVTQDTQENTNA-L 345
I + +K+ + +KE Q FK+ L+++ N ++ + ENT A L
Sbjct: 964 ANEMADQIDQLQKAKSKTEKERQQFKSECDDLQSQLQHISKNKGVSEKMAKSLENTIAEL 1023
Query: 346 KNTTQDFNKTTNE 358
++ D N+ N+
Sbjct: 1024 QHKCDDSNRNVND 1036
>ref|NP_593009.1| (NC_003424) hypothetical coiled-coil protein [Schizosaccharomyces
pombe]
sp|Q10411|YD86_SCHPO Hypothetical protein C1F3.06c in chromosome I
pir||T38077 hypothetical coiled-coil protein - fission yeast
(Schizosaccharomyces pombe)
emb|CAA94624.1| (Z70690) hypothetical coiled-coil protein [Schizosaccharomyces pombe]
Length = 1957
Score = 44.3 bits (103), Expect = 0.002
Identities = 89/377 (23%), Positives = 148/377 (38%), Gaps = 65/377 (17%)
Query: 15 ENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNKETPTSKNTYKKIQK 74
EN L + KSL +KT+ K EK + + L E N E + Y K+ +
Sbjct: 1056 ENLLLISSQTNKSLEDKTNQLK------YIEKNVQKLLDEKDQRNVELEELTSKYGKLGE 1109
Query: 75 LAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKD-----------LRALKEEFSKDLET 123
++ IKD L ++K KK DL N+ D L K E LE
Sbjct: 1110 ----ENAQIKDELLALRK---KSKKQHDLCANFVDDLKEKSDALEQLTNEKNELIVSLEQ 1162
Query: 124 DLSHSK----KRFELYTRLKSMSK--------VFISKSIVKNLEKIALDFKSDRHSISQR 171
S+++ +R +L RL M K + + +S + + K D+ S+S +
Sbjct: 1163 SNSNNEALVEERSDLANRLSDMKKSLSDSDNVISVIRSDLVRVNDELDTLKKDKDSLSTQ 1222
Query: 172 AFEFFKYMNYQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNSNPQDNLLD 231
E + D+ ++ K ++S N ++++ + P +LD
Sbjct: 1223 YSEVCQ----------DRDDLLDSLKGCEES---FNKYAVSLRELCTKSEIDVPVSEILD 1269
Query: 232 KQVWLNL-----LEHLKRLEEENYCFAKKRKEF--------LETRAMELSKDLKFLTQA- 277
N L L L ENY A + F L T E +K + L +
Sbjct: 1270 DNFVFNAGNFSELSRLTVLSLENYLDAFNQVNFKKMELDNRLTTTDAEFTKVVADLEKLQ 1329
Query: 278 NENDLPIYERGQRDKIIKRCEKSLNFLQKELQCFKTLLKSASIALENLQNNHQITAVTQD 337
+E+D + +RG +K +K EK NFL+KE + + + E + ++++ +D
Sbjct: 1330 HEHDDWLIQRGDLEKALKDSEK--NFLRKEAEMTENIHSLEEGKEETKKEIAELSSRLED 1387
Query: 338 TQENTNALKNTTQDFNK 354
Q TN LKN N+
Sbjct: 1388 NQLATNKLKNQLDHLNQ 1404
>ref|NP_072883.1| (NC_000908) cytadherence accessory protein (hmw2) [Mycoplasma
genitalium]
sp|P47460|HMW2_MYCGE Cytadherence high molecular weight protein 2 (Cytadherence accessory
protein 2)
pir||A64224 hypothetical protein MG218 - Mycoplasma genitalium
gb|AAC71437.1| (U39701) cytadherence accessory protein (hmw2) [Mycoplasma
genitalium]
Length = 1805
Score = 44.3 bits (103), Expect = 0.002
Identities = 89/359 (24%), Positives = 150/359 (40%), Gaps = 52/359 (14%)
Query: 13 KRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNKETPTSKNTYKKI 72
KR+ L LE+ +EK+ F + E RQL ++ ++ K
Sbjct: 1171 KRDEQQKKELQQATLQLEQFKFEKQNF-----DIEKQRQLVAIKTQCEKLSDEKKALN-- 1223
Query: 73 QKLAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKE--EFSKDLETDLSHSKK 130
QKL K+ L + YL K +Q++ L++ Y +L LKE E +KD + D H
Sbjct: 1224 QKLVELKN-LSQTYLANKNKAEYSQQQ---LQQKYTNLLDLKENLERTKD-QLDKKH--- 1275
Query: 131 RFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHSI--SQRAFEFFKYMNYQNLSLTD 188
+SI L K A D + ++ + +QR + + +N +
Sbjct: 1276 -----------------RSIFARLTKFANDLRFEKKQLLKAQRIVDDKNRLLKEN----E 1314
Query: 189 KGNMFLVAKFFKDSALLVN-IARFEM--KKIDDSVKNSNPQDNLLDKQVWLNLLEHLKRL 245
+ FL + + A+L + I+ FE K+ D++ S+ + + ++ L+E R
Sbjct: 1315 RNLHFLSNETERKRAVLEDQISYFEKQRKQATDAILASHKEVKKKEGELQKLLVELETRK 1374
Query: 246 EEENYCFAK---KRKEFLETRA--MELSKDLKFLTQANENDLPIYERGQRDKIIKRCEKS 300
+ N FAK +R+EF R +EL K L+ TQ N N+ + + KR +
Sbjct: 1375 TKLNNDFAKFSRQREEFENQRLKLLELQKTLQ--TQTNSNNFKTKAIQEIENSYKRGMEE 1432
Query: 301 LNFLQKELQCFKTLLKS--ASIALENLQNNHQITAVTQDTQENTNALKNTTQDFNKTTN 357
LNF +KE K+ L + E + Q+ V ++TQ N L+ N N
Sbjct: 1433 LNFQKKEFDKNKSRLYEYFRKMRDEIERKESQVKLVLKETQRKANLLEAQANKLNIEKN 1491
>pir||A64505 P115 homolog - Methanococcus jannaschii
Length = 1169
Score = 43.9 bits (102), Expect = 0.003
Identities = 57/261 (21%), Positives = 108/261 (40%), Gaps = 38/261 (14%)
Query: 99 KIIDLEKNYKDLRALKEEFSKDLETDLSHSKKRFELYTRLKSMSKVFIS--KSIVKNLEK 156
+I ++E N K L+ KE+ K ++ + ++ L + S V + ++ +KNLE+
Sbjct: 198 RISEVENNLKKLKKEKEDAEKYIKLNEELKAAKYALILKKVSYLNVLLENIQNDIKNLEE 257
Query: 157 IALDFKSDRHSISQRAFEFFKYMNYQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKI 216
+ +F S I +N L +KGN ++ +K++
Sbjct: 258 LKNEFLSKVREIDVEIENLKLRLNNIINELNEKGNEEVLE------------LHKSIKEL 305
Query: 217 DDSVKNSNPQDNLLDKQVWLNLLEHLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQ 276
+ ++N DK+V + + LK++E E K+KE ET+ +
Sbjct: 306 EVEIEN--------DKKVLDSSINELKKVEVE---IENKKKEIKETQKKII--------- 345
Query: 277 ANENDLPIYERGQRDKIIKRCEKSLNFLQKELQCFKTLLKSASIALENLQNNHQITAVTQ 336
EN I E+ Q+ K I+ K+LN+ ++ L+ + + +S SI ++ +I
Sbjct: 346 --ENRDSIIEKEQQIKEIEEKIKNLNYEKERLK--EAIAESESIIKHLKESEMEIADEIA 401
Query: 337 DTQENTNALKNTTQDFNKTTN 357
Q LK D + N
Sbjct: 402 KNQNELYRLKKELNDLDNLIN 422
>emb|CAA58041.1| (X82834) 256 kD golgin [Homo sapiens]
Length = 2185
Score = 43.9 bits (102), Expect = 0.003
Identities = 72/313 (23%), Positives = 126/313 (40%), Gaps = 31/313 (9%)
Query: 15 ENALFDHLDSLKSLLEKTHWEKEKFTPPINEK------ELNRQLKEVRWFNKETPTSKNT 68
E L + L+ + E EKE+ + +K E KE+ W +E T
Sbjct: 1048 EKKLNQQAEELQEIHEIQLQEKEQEVAELKQKILLFGCEKEEMNKEITWLKEEGVKQDTT 1107
Query: 69 YKKIQKLAVYKSPLIKDYLYTIKKLFATQKKI-IDLEKNYKDLRALKEEFSKDLETDLSH 127
++Q+ KS + KL A +K+ +DL K+ K+ L+E+ +
Sbjct: 1108 LNELQEQLKQKSAHVNSLAQDETKLKAHLEKLEVDLNKSLKENTFLQEQLVELKMLAEED 1167
Query: 128 SKKRFELYTRLKSMSKVFIS-----KSIVKNLEKIALDFKSDRHSISQRAFEFFKYMNYQ 182
+K EL ++LK+ + F S + K+LE +L+FK + A +
Sbjct: 1168 KRKVSELTSKLKTTDEEFQSLKSSHEKSNKSLEDKSLEFKKLSEEL---AIQLDICCKKT 1224
Query: 183 NLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLE-H 241
L K N + K +A+L I+ + + + ++ LL K ++ LE
Sbjct: 1225 EALLEAKTNELINISSSKTNAILSRISHCQH-------RTTKVKEALLIKTCTVSELEAQ 1277
Query: 242 LKRLEEE----NYCF--AKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIK 295
L++L EE N F A + E E + + D++ L E + E G + +
Sbjct: 1278 LRQLTEEQNTLNISFQQATHQLEEKENQIKSMKADIESL--VTEKEALQKEGGNQQQAAS 1335
Query: 296 RCEKSLNFLQKEL 308
E + L+KEL
Sbjct: 1336 EKESCITQLKKEL 1348
>ref|NP_002069.2| (NM_002078) golgi autoantigen, golgin subfamily a, 4; golgin 245;
golgin-240; p230 [Homo sapiens]
sp|Q13439|GOG4_HUMAN Golgi autoantigen, golgin subfamily A 4 (Trans-Golgi p230) (256 kDa
golgin) (Golgin-245) (72.1 protein)
gb|AAC50434.1| (U41740) trans-Golgi p230 [Homo sapiens]
prf||2211333A peripheral membrane protein p230 [Homo sapiens]
Length = 2230
Score = 43.9 bits (102), Expect = 0.003
Identities = 72/313 (23%), Positives = 126/313 (40%), Gaps = 31/313 (9%)
Query: 15 ENALFDHLDSLKSLLEKTHWEKEKFTPPINEK------ELNRQLKEVRWFNKETPTSKNT 68
E L + L+ + E EKE+ + +K E KE+ W +E T
Sbjct: 1048 EKKLNQQAEELQEIHEIQLQEKEQEVAELKQKILLFGCEKEEMNKEITWLKEEGVKQDTT 1107
Query: 69 YKKIQKLAVYKSPLIKDYLYTIKKLFATQKKI-IDLEKNYKDLRALKEEFSKDLETDLSH 127
++Q+ KS + KL A +K+ +DL K+ K+ L+E+ +
Sbjct: 1108 LNELQEQLKQKSAHVNSLAQDETKLKAHLEKLEVDLNKSLKENTFLQEQLVELKMLAEED 1167
Query: 128 SKKRFELYTRLKSMSKVFIS-----KSIVKNLEKIALDFKSDRHSISQRAFEFFKYMNYQ 182
+K EL ++LK+ + F S + K+LE +L+FK + A +
Sbjct: 1168 KRKVSELTSKLKTTDEEFQSLKSSHEKSNKSLEDKSLEFKKLSEEL---AIQLDICCKKT 1224
Query: 183 NLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLE-H 241
L K N + K +A+L I+ + + + ++ LL K ++ LE
Sbjct: 1225 EALLEAKTNELINISSSKTNAILSRISHCQH-------RTTKVKEALLIKTCTVSELEAQ 1277
Query: 242 LKRLEEE----NYCF--AKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIK 295
L++L EE N F A + E E + + D++ L E + E G + +
Sbjct: 1278 LRQLTEEQNTLNISFQQATHQLEEKENQIKSMKADIESL--VTEKEALQKEGGNQQQAAS 1335
Query: 296 RCEKSLNFLQKEL 308
E + L+KEL
Sbjct: 1336 EKESCITQLKKEL 1348
>ref|NP_248653.1| (NC_000909) chromosome segretation protein (smc1) [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
sp|Q59037|SMC_METJA Chromosome partition protein smc homolog
gb|AAB99663.1| (U67604) chromosome segretation protein (smc1) [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
Length = 1169
Score = 43.9 bits (102), Expect = 0.003
Identities = 57/261 (21%), Positives = 108/261 (40%), Gaps = 38/261 (14%)
Query: 99 KIIDLEKNYKDLRALKEEFSKDLETDLSHSKKRFELYTRLKSMSKVFIS--KSIVKNLEK 156
+I ++E N K L+ KE+ K ++ + ++ L + S V + ++ +KNLE+
Sbjct: 198 RISEVENNLKKLKKEKEDAEKYIKLNEELKAAKYALILKKVSYLNVLLENIQNDIKNLEE 257
Query: 157 IALDFKSDRHSISQRAFEFFKYMNYQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKI 216
+ +F S I +N L +KGN ++ +K++
Sbjct: 258 LKNEFLSKVREIDVEIENLKLRLNNIINELNEKGNEEVLE------------LHKSIKEL 305
Query: 217 DDSVKNSNPQDNLLDKQVWLNLLEHLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQ 276
+ ++N DK+V + + LK++E E K+KE ET+ +
Sbjct: 306 EVEIEN--------DKKVLDSSINELKKVEVE---IENKKKEIKETQKKII--------- 345
Query: 277 ANENDLPIYERGQRDKIIKRCEKSLNFLQKELQCFKTLLKSASIALENLQNNHQITAVTQ 336
EN I E+ Q+ K I+ K+LN+ ++ L+ + + +S SI ++ +I
Sbjct: 346 --ENRDSIIEKEQQIKEIEEKIKNLNYEKERLK--EAIAESESIIKHLKESEMEIADEIA 401
Query: 337 DTQENTNALKNTTQDFNKTTN 357
Q LK D + N
Sbjct: 402 KNQNELYRLKKELNDLDNLIN 422
>ref|XP_137488.1| (XM_137488) RIKEN cDNA A430106J12 [Mus musculus]
Length = 1579
Score = 43.9 bits (102), Expect = 0.003
Identities = 82/366 (22%), Positives = 141/366 (38%), Gaps = 67/366 (18%)
Query: 5 TSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTP-PINEKELNRQLKEVRWFNKETP 63
T Q+ESL+K + L + L+ +E + + KEL + +++R K
Sbjct: 391 TFQLESLEKENSQLDEENLELRRSVESLKCASMRMAQLQLENKELESEKEQLR---KGLE 447
Query: 64 TSKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKDLET 123
+ ++KK ++L V L + K L + KKI LE +DL + K LE
Sbjct: 448 LMRASFKKTERLEVSYQGLDTENQRLQKALENSNKKIQQLESELQDLEMENQTLQKSLE- 506
Query: 124 DLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRAFEFFKYMNYQN 183
+L S KR E + K+LE+ + D+ K + +N
Sbjct: 507 ELKISSKRLEQLEKEN------------KSLEQETSQLEKDK-----------KQLEKEN 543
Query: 184 LSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQ--VWLNLLEH 241
L + + KD+ L N + + N ++ L K+ V+
Sbjct: 544 KRLRQQAEI-------KDTTLEENNVK---------IGNLEKENKTLFKEINVYKESCVR 587
Query: 242 LKRLEEENYCFAKKRKEFLET-------------RAMELSKDLKFLTQ------ANENDL 282
LK LE+EN K+ ++T + +++ DL+ LT N+ L
Sbjct: 588 LKELEKENKELVKRATIDIKTLVTLREDLVSEKLKTQQMNNDLEKLTHELEKIGLNKERL 647
Query: 283 PIYERGQRDKIIKRCEKSL-NFLQKELQCFKTLLKSASIALENLQN-NHQITAVTQDTQE 340
E+ D K E L + L+K L+ + + + LE N N Q+ + ++
Sbjct: 648 LHDEQSTDDSRYKLLESKLESTLKKSLEIKEEKIAALEARLEESTNYNQQLRHELKTVKK 707
Query: 341 NTNALK 346
N ALK
Sbjct: 708 NYEALK 713
>gb|AAC51791.1| (U31906) golgin-245 [Homo sapiens]
prf||2206426A globin 245 [Homo sapiens]
Length = 2083
Score = 43.9 bits (102), Expect = 0.003
Identities = 72/313 (23%), Positives = 126/313 (40%), Gaps = 31/313 (9%)
Query: 15 ENALFDHLDSLKSLLEKTHWEKEKFTPPINEK------ELNRQLKEVRWFNKETPTSKNT 68
E L + L+ + E EKE+ + +K E KE+ W +E T
Sbjct: 903 EKKLNQQAEELQEIHEIQLQEKEQEVAELKQKILLFGCEKEEMNKEITWLKEEGVKQDTT 962
Query: 69 YKKIQKLAVYKSPLIKDYLYTIKKLFATQKKI-IDLEKNYKDLRALKEEFSKDLETDLSH 127
++Q+ KS + KL A +K+ +DL K+ K+ L+E+ +
Sbjct: 963 LNELQEQLKQKSAHVNSLAQDETKLKAHLEKLEVDLNKSLKENTFLQEQLVELKMLAEED 1022
Query: 128 SKKRFELYTRLKSMSKVFIS-----KSIVKNLEKIALDFKSDRHSISQRAFEFFKYMNYQ 182
+K EL ++LK+ + F S + K+LE +L+FK + A +
Sbjct: 1023 KRKVSELTSKLKTTDEEFQSLKSSHEKSNKSLEDKSLEFKKLSEEL---AIQLDICCKKT 1079
Query: 183 NLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLE-H 241
L K N + K +A+L I+ + + + ++ LL K ++ LE
Sbjct: 1080 EALLEAKTNELINISSSKTNAILSRISHCQH-------RTTKVKEALLIKTCTVSELEAQ 1132
Query: 242 LKRLEEE----NYCF--AKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKIIK 295
L++L EE N F A + E E + + D++ L E + E G + +
Sbjct: 1133 LRQLTEEQNTLNISFQQATHQLEEKENQIKSMKADIESL--VTEKEALQKEGGNQQQAAS 1190
Query: 296 RCEKSLNFLQKEL 308
E + L+KEL
Sbjct: 1191 EKESCITQLKKEL 1203
>pir||T18296 myosin heavy chain - Entamoeba histolytica
gb|AAB48065.1| (L03534) myosin heavy chain [Entamoeba histolytica]
Length = 2139
Score = 43.5 bits (101), Expect = 0.004
Identities = 80/372 (21%), Positives = 148/372 (39%), Gaps = 35/372 (9%)
Query: 9 ESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNKETPTSKNT 68
+ + K+ N + + K + K E E K+L +L++ + ET S
Sbjct: 1032 DDIAKKLNKITIECEDAKDEIAKLEQELED--EENKNKDLTNELQQTQLKLGETEKSLAA 1089
Query: 69 YKKIQKLAVYKSPLIKDYL----YTIKKLFAT----QKKIIDLEKNYKDLRALKEEFSKD 120
K A + + L T K L T +KKI L+++Y+DL K + D
Sbjct: 1090 QVAATKKASDERDTLSQNLENEKLTTKNLTKTKADLEKKISGLKQDYEDLEDDKNKIEGD 1149
Query: 121 LETDLSHSKKRFELYTR-------LKSMSKVFISKSIVKNLEKIAL--DFKSDRHSISQR 171
L K+ + T+ L+ + + S+ EK A+ D K+ +I ++
Sbjct: 1150 LRNAQRKIKELDDEITKGADVSQYLQKQKEEYESQIAKMQEEKEAIGNDVKNKEKTIKEK 1209
Query: 172 AFEFFKYMNYQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNSNPQDNLLD 231
E + + +K + K + + E K+ +S KNS +D
Sbjct: 1210 ELEIQSLQEKLDETEVEKEDAEKKKKEIEKEMKALQ----EEKENVESSKNSTEKDK--- 1262
Query: 232 KQVWLNLLEHLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRD 291
K++ NL + K+L++ E L+ +A +L L + +E + E +
Sbjct: 1263 KKLEDNLKDTQKKLDD-----MTADNEKLKAKAKDLEAQLNEVQDNHEKAVADAELLNKK 1317
Query: 292 KIIKRCEKSLNFLQKELQCFKTLLKSASIALENLQNNHQITAVTQDTQENTNALKNTTQD 351
K + +K LN L+ EL+ T KS + +N + ++ A++++ + LKN D
Sbjct: 1318 K--AQSDKELNSLKAELEAL-TKAKSV-VESKNKDSENEKAALSEEIDQANEKLKNIQAD 1373
Query: 352 FNKTTNEPTNPN 363
K T + N
Sbjct: 1374 LRKATADLQEAN 1385
>gb|AAH31396.1| (BC031396) RIKEN cDNA 1200008O12 gene [Mus musculus]
Length = 461
Score = 42.7 bits (99), Expect = 0.007
Identities = 73/323 (22%), Positives = 147/323 (44%), Gaps = 58/323 (17%)
Query: 45 EKELNRQLKEVRWFNKETPTSKNTYKKIQKLAVYKSPLIKDYL---YTIKKLFAT-QKKI 100
EK+ +R L++++ E KN Y ++K + +KD+L Y+ LF ++K
Sbjct: 53 EKDRSRLLEKIQVLEAER--EKNVYYLLEKDKEIQR--LKDHLRSRYSSSSLFEQLEEKT 108
Query: 101 IDLEKNYKDLRALKEEFSKDLETDLSHSKKRFELYTRLKSM-SKVFISKSIVKNLEKIAL 159
+ EK + L +L +E + L+ LS + KR + L+S S + +S+S+ N
Sbjct: 109 KECEKKQQLLESLSKE-TDVLKNQLSATTKRL---SELESKASTLHLSQSMPANC----- 159
Query: 160 DFKSDRHSISQRAFEFFKYMNYQNLSLTDKGNMFLVAKFFKDSALLVNIAR-FEMKKIDD 218
F S +SI ++ + + +K +LV +++ + +A+ FE++K +
Sbjct: 160 -FNSSMNSIHEKEMQLKDAL--------EKNQQWLVYDQQREAYVKGLLAKIFELEKRTE 210
Query: 219 SVKNSNPQDNLLDKQVWLNLLEHLKRLEEENYCFAKKRK--EFLETRAMELSKDLKFLTQ 276
+ S L + +K++E E Y +K+K LE +L + + +TQ
Sbjct: 211 TAAAS--------------LTQQMKKIESEGYLQVEKQKYDHLLENAKKDLEVERQAVTQ 256
Query: 277 ANENDLPIYERGQRDKIIKRCEKSLNFLQKELQCFKTLLKSASIA-LENLQNNHQITAVT 335
R + D+ ++ E++ +KE++ LL S A +++L+ + Q T
Sbjct: 257 L---------RLELDEFRRKYEEA----RKEVEDLNQLLSSQRKADIQHLEEDKQKTERI 303
Query: 336 QDTQENTNALKNTTQDFNKTTNE 358
Q +E ++ K ++ K + E
Sbjct: 304 QKLREESSIFKGKLEEERKRSEE 326
>ref|NP_562800.1| (NC_003366) hypothetical protein [Clostridium perfringens]
dbj|BAB81590.1| (AP003192) hypothetical protein [Clostridium perfringens]
Length = 451
Score = 42.7 bits (99), Expect = 0.007
Identities = 61/283 (21%), Positives = 134/283 (46%), Gaps = 39/283 (13%)
Query: 1 MGSATSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNK 60
M ++ +I +LKK L +SLKS +K E EK L+++LKEV+ N
Sbjct: 163 MNNSNKEIANLKKEIERLKSENNSLKSAKDKNSHEVEK---------LSKELKEVKSNNA 213
Query: 61 ETPTSKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQKKIIDLEKNYKDLRALKEEFSKD 120
E K +++ K + + + +K K ++EK +DL+ E +
Sbjct: 214 E-------LNKTIEISRNKEKNLSNEINNLK------SKNNNVEKELRDLK----EKNNS 256
Query: 121 LETDLSHSKKRFELYTR-LKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRAFEFFKYM 179
L + ++ +KK EL + + S+ + +K+ + EK+ L+ ++ + + + E + +
Sbjct: 257 LSSIVTEAKKNLELLNKEINSLKE--RNKTQREENEKLTLEGENLKINCKEIG-EKLEGL 313
Query: 180 NYQNLSLTDKGNMFLVAKFF---KDSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQVWL 236
N +N L + + K + ++S L + ++ +++++++ + + + L K++
Sbjct: 314 NKENGQLKETSELLNKEKIWIKDQNSGL-----KKQILELEENLQLALEEKDALGKKISE 368
Query: 237 NLLEHLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANE 279
++ +K L+EE K E LE A +L ++ + L + N+
Sbjct: 369 DMEVEMKALKEEAE-EVKAEMEILEEEAKKLKREKELLMENNK 410
>ref|NP_350050.1| (NC_003030) Hypothetical protein [Clostridium acetobutylicum]
gb|AAK81390.1|AE007843_8 (AE007843) Hypothetical protein [Clostridium acetobutylicum]
Length = 909
Score = 42.4 bits (98), Expect = 0.009
Identities = 74/385 (19%), Positives = 152/385 (39%), Gaps = 66/385 (17%)
Query: 5 TSQIESLKKRENALFDHLDSLKSLLEKTHWEKEKFTPPINEKELNRQLKEVRWFNKETPT 64
T ++E +KK D LKS++ +K+K T +++ + ++ NKE
Sbjct: 265 TRKLEKIKKEFICNLKAKDELKSIIA---CDKDKITRYFYKEKTKVINENIKRLNKE--- 318
Query: 65 SKNTYKKIQKLAVYKSPLIKDYLYTIKKLFATQKKI--------IDLEKNYKDL-RALKE 115
I +++ + + + Y I+KL ++ + ++ E K + ++ E
Sbjct: 319 -------INAISIIEEGVDDNIEYLIQKLKDEERYLKPNHPLNDMNKENEIKKIAKSAME 371
Query: 116 EFSKDLETDLSHSKKRFELYTRLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRAFEF 175
+ + ++++DL+ + + + +R+ + + K + L+K A ++ +
Sbjct: 372 DVNSNMDSDLNAISELYNIESRMDQIQRNLKLKKDLVELKKEAQLLENAK---------- 421
Query: 176 FKYMNYQNLSLTDKGNMFLVAKF-FKDSALLVNIARFEMKKIDDSVKNSNPQDNLLDKQV 234
+ L + +K +V + KD+ L N KK + +K N ++ L
Sbjct: 422 ------EKLDILEKYKPIMVTRNKHKDNELFKNSYE---KKYEKEIKEYNQAEDELKSMN 472
Query: 235 WLNLLEHLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQANENDLPIYERGQRDKII 294
NL ++ ++ F K +E +E E D+ L EN I + +RD II
Sbjct: 473 ISNLDDY----DKAKIIFDDKEQELIEA---ENISDIASLDAEKENSKIIKYKAKRDDII 525
Query: 295 KRCEKSLNFLQKELQCFKTLLKSASIALENLQNNHQITAVTQDTQENTNALK-------- 346
K+ LN + E + + +S ++N N ++ ++ N LK
Sbjct: 526 KQNSDILN-VNMETYFADEVKEDSSKKIQNTINEKELLKKDENGINKENELKENKDIVKE 584
Query: 347 --------NTTQDFNKTTNEPTNPN 363
N Q+ NKT N N
Sbjct: 585 ESLPKENVNNKQEDNKTVKPADNKN 609
>gb|AAM00871.1|AF486555_2 (AF486555) RloE [Campylobacter jejuni]
Length = 800
Score = 42.4 bits (98), Expect = 0.009
Identities = 64/306 (20%), Positives = 120/306 (38%), Gaps = 65/306 (21%)
Query: 28 LLEKTHWEKEKFTPPINEKELNRQLKEVRWFNKETPTSKNTYKKIQKLAVYKSPLIKDYL 87
+LEK KE T EL + L+E F+KE + Q+ +PL
Sbjct: 246 ILEKKIIIKENLT-----SELRQWLEEGLKFHKE-------HSSTQQCKFCNNPL----- 288
Query: 88 YTIKKLFATQKKIIDLEKNYKDLRALKEEFSKDLETDLSHSKKRFELYTRLKSMSKVFIS 147
T ++I+ +E N KD KE+ K+L
Sbjct: 289 --------TLERIVWIENNIKDDSGEKEKIEKEL-------------------------- 314
Query: 148 KSIVKNLEKIALDFKSDRHSISQRAFEFFKYMNYQNLSLTDKGNMFL-VAKFFKDSALLV 206
K ++ N E L+ K+ + F Y NY++ + K + + +A + K+ +
Sbjct: 315 KYLLDNFENYKLELKNLLQDVKNENF----YSNYKDSFIALKEQLGVSIANYNKEILKIE 370
Query: 207 NIARFEMKKIDDSVKNSNPQDNLLDKQVWLNLLEHLKRLEEE-------NYCFAKKRKEF 259
+ + K + +K N D + + LN +E+L + +E N A++R
Sbjct: 371 KKIKEKQKDVFTPIKLENINDFSNEIFLTLNQIENLCKENDEYTEKLLANQNEARERLRL 430
Query: 260 LETRAMELSKDLKFLTQANENDLPIYERGQRDKIIKRCEKSLNFLQKELQCFKTLLKSAS 319
E + +KD +L + +E ++ ++ IK + +N L K ++ +KT L +
Sbjct: 431 NE--VAKFAKDSDYLAKQDEVEILQQNINILEESIKTQDNKINLLNKRIENYKTKLSNLE 488
Query: 320 IALENL 325
+ N+
Sbjct: 489 TSTSNI 494
>emb|CAB39037.2| (AL034559) hypothetical protein, PFC0960c [Plasmodium falciparum 3D7]
Length = 1946
Score = 42.4 bits (98), Expect = 0.009
Identities = 82/386 (21%), Positives = 157/386 (40%), Gaps = 50/386 (12%)
Query: 7 QIESLKKRENALFDHLDSLKSLLEKT------HWEKEKFTPPINEKELNRQLKEVRWFNK 60
QIE+L+ + ++ + ++K H EKE N+ E + K F+
Sbjct: 1255 QIETLENNLKIGKEKINKFDNEIQKLQYKINIHIEKETEIKKTNDIEKEKNTKLSNKFDI 1314
Query: 61 ETPTSKNTYKKIQKLAVYKSPLIKD---YLYTIKKLFATQKKII-DLEKNYKDLRALKEE 116
+ N + KI+ L + + + + T K L+ +K+ DL+ K+ ++E
Sbjct: 1315 INKENNNLHNKIETLLKNEKEISTENVKLIETNKTLYIENEKLSNDLKNTLKEKEKIQEN 1374
Query: 117 FSKDLETDLSHSKKRFELYT----RLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRA 172
++K + H K EL + + K M ++ K + NL+K + ++++ +
Sbjct: 1375 YNK---INKEHIKIIEELQSYKEIKEKHMKEITQIKEQIHNLDKHIAQIQIEKNNFEE-- 1429
Query: 173 FEFFKYMNYQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNSNPQDNLLDK 232
Y+ +N + +K + L K+ + S ++ KI+D K+ ++ LL K
Sbjct: 1430 ----SYLKEKNEN--EKMSNILEEKYKELSTYEID-KNINKIKIEDLEKDK--ENILLTK 1480
Query: 233 QVWLNLLEH-----LKRLEEENYCFAK---------KRKEFLETRAMELSKDLKFLTQAN 278
+N L+ + LE+ N + K K K + ++ K L
Sbjct: 1481 NEEINNLKEEYKMVQQHLEDTNVLYEKQKLAIDTITKEKNNIINECDKIKNKNKKLNNKL 1540
Query: 279 ENDLPIYE------RGQRDKIIKRCEKSLNFLQKELQ-CFKTLLKSASIALENLQNN-HQ 330
+ + YE + + +II+R +K+ + L+ FK ENLQ Q
Sbjct: 1541 KENQNNYEHTLNNIKKENQQIIEREKKNFTQKVESLEHAFKQSYNQLKDQNENLQQQIKQ 1600
Query: 331 ITAVTQDTQENTNALKNTTQDFNKTT 356
+ V QD + N+ LKN + K T
Sbjct: 1601 LKNVNQDIKTNSKNLKNVNEILIKET 1626
>ref|NP_473326.1| (NC_000521) predicted using hexExon; MAL3P7.21 (PFC0960c),
Hypothetical protein, len: 1929 aa [Plasmodium
falciparum]
Length = 1928
Score = 42.4 bits (98), Expect = 0.009
Identities = 82/386 (21%), Positives = 157/386 (40%), Gaps = 50/386 (12%)
Query: 7 QIESLKKRENALFDHLDSLKSLLEKT------HWEKEKFTPPINEKELNRQLKEVRWFNK 60
QIE+L+ + ++ + ++K H EKE N+ E + K F+
Sbjct: 1255 QIETLENNLKIGKEKINKFDNEIQKLQYKINIHIEKETEIKKTNDIEKEKNTKLSNKFDI 1314
Query: 61 ETPTSKNTYKKIQKLAVYKSPLIKD---YLYTIKKLFATQKKII-DLEKNYKDLRALKEE 116
+ N + KI+ L + + + + T K L+ +K+ DL+ K+ ++E
Sbjct: 1315 INKENNNLHNKIETLLKNEKEISTENVKLIETNKTLYIENEKLSNDLKNTLKEKEKIQEN 1374
Query: 117 FSKDLETDLSHSKKRFELYT----RLKSMSKVFISKSIVKNLEKIALDFKSDRHSISQRA 172
++K + H K EL + + K M ++ K + NL+K + ++++ +
Sbjct: 1375 YNK---INKEHIKIIEELQSYKEIKEKHMKEITQIKEQIHNLDKHIAQIQIEKNNFEE-- 1429
Query: 173 FEFFKYMNYQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKKIDDSVKNSNPQDNLLDK 232
Y+ +N + +K + L K+ + S ++ KI+D K+ ++ LL K
Sbjct: 1430 ----SYLKEKNEN--EKMSNILEEKYKELSTYEID-KNINKIKIEDLEKDK--ENILLTK 1480
Query: 233 QVWLNLLEH-----LKRLEEENYCFAK---------KRKEFLETRAMELSKDLKFLTQAN 278
+N L+ + LE+ N + K K K + ++ K L
Sbjct: 1481 NEEINNLKEEYKMVQQHLEDTNVLYEKQKLAIDTITKEKNNIINECDKIKNKNKKLNNKL 1540
Query: 279 ENDLPIYE------RGQRDKIIKRCEKSLNFLQKELQ-CFKTLLKSASIALENLQNN-HQ 330
+ + YE + + +II+R +K+ + L+ FK ENLQ Q
Sbjct: 1541 KENQNNYEHTLNNIKKENQQIIEREKKNFTQKVESLEHAFKQSYNQLKDQNENLQQQIKQ 1600
Query: 331 ITAVTQDTQENTNALKNTTQDFNKTT 356
+ V QD + N+ LKN + K T
Sbjct: 1601 LKNVNQDIKTNSKNLKNVNEILIKET 1626
>ref|NP_208184.1| (NC_000915) DNA repair protein (recN) [Helicobacter pylori 26695]
sp|O25943|RECN_HELPY DNA repair protein recN (Recombination protein N)
pir||A64694 DNA repair protein - Helicobacter pylori (strain 26695)
gb|AAD08433.1| (AE000639) DNA repair protein (recN) [Helicobacter pylori 26695]
Length = 524
Score = 42.4 bits (98), Expect = 0.009
Identities = 40/147 (27%), Positives = 62/147 (41%), Gaps = 30/147 (20%)
Query: 53 KEVRWFNKETPTSKNTYKKIQKLAVYK----------------SPLIKDYLYTIKKLF-- 94
++ R+F +T SKNT K + K + + L+ Y+ K F
Sbjct: 96 EKTRYFLNQTSLSKNTLKALLKGLIKRLSNDRFSQNELNDILMLSLLDGYIQNENKAFSP 155
Query: 95 ---ATQKKIIDLEKNYKDLRAL--KEEFSKDLETDLSHSKKRFEL-------YTRLKSMS 142
A ++K LEK K+ R L K+ F KDLE L+ K + E Y RL
Sbjct: 156 LLGALEEKFTRLEKLEKERRLLEDKKRFQKDLEERLNFEKMKLERLDLKEDEYERLLEQK 215
Query: 143 KVFISKSIVKNLEKIALDFKSDRHSIS 169
K+ SK + + +AL+ + H I+
Sbjct: 216 KLLSSKEKLNDKIALALEVLENTHKIT 242
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.315 0.131 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,203,746
Number of Sequences: 1026957
Number of extensions: 9066400
Number of successful extensions: 51454
Number of sequences better than 1.0e-02: 47
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 51282
Number of HSP's gapped (non-prelim): 190
length of query: 370
length of database: 324,149,939
effective HSP length: 122
effective length of query: 248
effective length of database: 198,861,185
effective search space: 49317573880
effective search space used: 49317573880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 98 (42.4 bits)