BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645619|ref|NP_207795.1| hypothetical protein
[Helicobacter pylori 26695]
         (273 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207795.1|  (NC_000915) hypothetical protein [Helicoba...   555  e-157
ref|NP_223659.1|  (NC_000921) putative [Helicobacter pylori ...   108  8e-23
ref|NP_207787.1|  (NC_000915) hypothetical protein [Helicoba...    97  2e-19
ref|NP_061702.1|  (NC_002490) nickase [Xylella fastidiosa] [...    49  8e-05
pir||B48487  MocB (Tn4399) - Bacteroides fragilis >gi|409471...    44  0.001

>ref|NP_207795.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||D64645 hypothetical protein HP1004 - Helicobacter pylori (strain 26695)
 gb|AAD08051.1| (AE000608) H. pylori predicted coding region HP1004 [Helicobacter
           pylori 26695]
          Length = 273

 Score =  555 bits (1431), Expect = e-157
 Identities = 273/273 (100%), Positives = 273/273 (100%)

Query: 1   MALEKSYSKNFESDELFDYEIIKPKKTLKIQYTYAKRYYKEVEKFAKNLTQLTQEEFMRL 60
           MALEKSYSKNFESDELFDYEIIKPKKTLKIQYTYAKRYYKEVEKFAKNLTQLTQEEFMRL
Sbjct: 1   MALEKSYSKNFESDELFDYEIIKPKKTLKIQYTYAKRYYKEVEKFAKNLTQLTQEEFMRL 60

Query: 61  REPQKQVVIKNIGNMTRLHSKRAMDYIAKHGELVRDEFFNEVNYNDIAEQWNEQFEKLLE 120
           REPQKQVVIKNIGNMTRLHSKRAMDYIAKHGELVRDEFFNEVNYNDIAEQWNEQFEKLLE
Sbjct: 61  REPQKQVVIKNIGNMTRLHSKRAMDYIAKHGELVRDEFFNEVNYNDIAEQWNEQFEKLLE 120

Query: 121 NKSRVKNCALHLVFSIDENCNEKNLKALELSVYQTLTNTLGYDYPFIMKLHTHQNNPHAH 180
           NKSRVKNCALHLVFSIDENCNEKNLKALELSVYQTLTNTLGYDYPFIMKLHTHQNNPHAH
Sbjct: 121 NKSRVKNCALHLVFSIDENCNEKNLKALELSVYQTLTNTLGYDYPFIMKLHTHQNNPHAH 180

Query: 181 VIINKTNKITNKQLCFNSKDSCKEFYHTLRETFKDYLFANSKGELQYSNTPNIYKAIKDI 240
           VIINKTNKITNKQLCFNSKDSCKEFYHTLRETFKDYLFANSKGELQYSNTPNIYKAIKDI
Sbjct: 181 VIINKTNKITNKQLCFNSKDSCKEFYHTLRETFKDYLFANSKGELQYSNTPNIYKAIKDI 240

Query: 241 ETELDALENRLETIRVLGMKTIFIKFWVVQLLK 273
           ETELDALENRLETIRVLGMKTIFIKFWVVQLLK
Sbjct: 241 ETELDALENRLETIRVLGMKTIFIKFWVVQLLK 273



>ref|NP_223659.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||B71870 hypothetical protein jhp0942 - Helicobacter pylori (strain J99)
 gb|AAD06518.1| (AE001523) putative [Helicobacter pylori J99]
          Length = 677

 Score =  108 bits (269), Expect = 8e-23
 Identities = 65/192 (33%), Positives = 104/192 (53%), Gaps = 19/192 (9%)

Query: 67  VVIKNIGNMTRLHSKRAMDYIAKHGELVRDEFFNEVNYNDIAEQWNEQFEKLLENKSRVK 126
           V+IKNIG M R H + A++Y  ++ E   +E F E +   I E W   F+      ++  
Sbjct: 70  VLIKNIGQMKRSHLENALNYALENSETAYNEMFLECDKQFILESWLNDFDL-----TKDY 124

Query: 127 NCALHLVFSIDENCNEKNLKALELSVYQTLTNTLGYDYPFIMKLHTHQNNPHAHVIINKT 186
           N  +HLVFSI +  +E+ ++ L  S +++L   L  +Y F +  H HQ++ H H  INKT
Sbjct: 125 NETMHLVFSIKDKPDEETMQGLLHSTWESLKIRLP-EYKFALVPHAHQDHAHIHCFINKT 183

Query: 187 NKITNKQLCFNSKDSCKEFYHTLRETF----------KDYLFANSKGELQYSNTPNIYKA 236
           N++T ++L F  ++ CKEF++ LR  F          ++YL+ N   E +     NI   
Sbjct: 184 NQLTRRRLRFKGREDCKEFFNELRSEFAYRLNEHLLSEEYLYVN---EPKLKELDNIKLQ 240

Query: 237 IKDIETELDALE 248
           ++D+E E  ALE
Sbjct: 241 LQDLEKEEKALE 252



>ref|NP_207787.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||D64644 hypothetical protein HP0996 - Helicobacter pylori (strain 26695)
 gb|AAD08046.1| (AE000608) H. pylori predicted coding region HP0996 [Helicobacter
           pylori 26695]
          Length = 600

 Score = 96.7 bits (239), Expect = 2e-19
 Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 19/184 (10%)

Query: 75  MTRLHSKRAMDYIAKHGELVRDEFFNEVNYNDIAEQWNEQFEKLLENKSRVKNCALHLVF 134
           M R H + A++Y  ++ E   +E F E +   I E W   F+      ++  N  +HLVF
Sbjct: 1   MKRSHLENALNYALENSETAYNEMFLECDKQFILESWLNDFDL-----TKDYNETMHLVF 55

Query: 135 SIDENCNEKNLKALELSVYQTLTNTLGYDYPFIMKLHTHQNNPHAHVIINKTNKITNKQL 194
           SI +  +E+ ++ L  S +++L   L  +Y F +  H HQ++ H H  INKTN++T ++L
Sbjct: 56  SIKDKPDEETMQGLLHSTWESLKIRLP-EYKFALVPHAHQDHAHIHCFINKTNQLTRRRL 114

Query: 195 CFNSKDSCKEFYHTLRETF----------KDYLFANSKGELQYSNTPNIYKAIKDIETEL 244
            F   + CKEF++ LR  F          ++YL+ N   E +     NI + ++D+E E 
Sbjct: 115 RFKGHEDCKEFFNELRSEFAYRLNDHLLSEEYLYVN---EPKLKELDNIKQQLQDLEKEE 171

Query: 245 DALE 248
            ALE
Sbjct: 172 KALE 175



>ref|NP_061702.1| (NC_002490) nickase [Xylella fastidiosa] [Xylella fastidiosa 9a5c]
 pir||F82866 nickase XFa0047 [imported] - Xylella fastidiosa (strain 9a5c)
 gb|AAF85615.1|AE003851_46 (AE003851) nickase [Xylella fastidiosa]
          Length = 463

 Score = 48.5 bits (114), Expect = 8e-05
 Identities = 35/140 (25%), Positives = 70/140 (50%), Gaps = 7/140 (5%)

Query: 48  NLTQLTQEEFMRLREPQKQVVIKNIG-NMTRLHSKRAMDYIAKHGELVRDEFFNEV-NYN 105
           N T+  +    R+     +V++K  G      H K  +DYI ++G+L  +    E+ N  
Sbjct: 26  NNTKKLRSTAKRVTGRSSEVMVKVTGFGKGAGHVKAHLDYITRNGKLEMENDRGEIFNGK 85

Query: 106 DIAEQWNEQFEKLLENKSRVKNC--ALHLVFSIDENCNEKNLKALELSVYQTLTNTLGYD 163
           +  +++ + +EK   +  R KN    +H+V S+ E  + +++K    SV +    T G +
Sbjct: 86  EEVKEFFKDWEKDFGDGKRHKNQRDTMHMVLSMPETTDSESVKK---SVREFAKATFGKN 142

Query: 164 YPFIMKLHTHQNNPHAHVII 183
           + ++  LHT + +PH H+ +
Sbjct: 143 HEYVFVLHTDEPHPHCHLTV 162



>pir||B48487 MocB (Tn4399) - Bacteroides fragilis
 gb|AAA98401.1| (L20975) 'MocA' [Bacteroides fragilis]
          Length = 318

 Score = 44.3 bits (103), Expect = 0.001
 Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 22/193 (11%)

Query: 95  RDEFFNEVNYNDIAEQWNEQFEKLLENKSRVKNCALH--LVFSIDENCNEKNLKALELSV 152
           + +    V      EQ  EQFE       +VKN   H  L FS ++    K   AL L +
Sbjct: 23  KSKLLEAVGVEGTPEQMAEQFELQTLLNDKVKNTVGHTSLNFSPEDGERLKTDDALMLQI 82

Query: 153 YQTLTNTLGYDYP-FIMKLHTHQNNPHAHVIINKTNK----ITNKQLCFNSKDSCKEFYH 207
                  +G +   +I+  HT + +PH H++ N+ +     I++K   + ++  CK    
Sbjct: 83  AHDYMAKMGIENTQYIVARHTDREHPHCHIVFNRVDNDGKTISDKNDFYRNEKVCKMLTA 142

Query: 208 TLRETFKDYLFANSKGELQ------YSNTPN-IYKAIKDIETELDALENRLETIRVLGMK 260
             R       FAN K  ++      Y    + +YKA+K    EL    +  E    L  +
Sbjct: 143 KYR-----LHFANGKDNIKEERLRPYDKAKHEVYKALKG---ELPHARSWNELKEALSER 194

Query: 261 TIFIKFWVVQLLK 273
            I +KF V +  K
Sbjct: 195 DIELKFKVSRTTK 207



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.318    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,858,460
Number of Sequences: 1026957
Number of extensions: 7010859
Number of successful extensions: 24244
Number of sequences better than 1.0e-02: 5
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24235
Number of HSP's gapped (non-prelim): 6
length of query: 273
length of database: 324,149,939
effective HSP length: 119
effective length of query: 154
effective length of database: 201,942,056
effective search space: 31099076624
effective search space used: 31099076624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 96 (41.6 bits)