BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645620|ref|NP_207796.1| hypothetical protein
[Helicobacter pylori 26695]
         (104 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207796.1|  (NC_000915) hypothetical protein [Helicoba...   209  4e-54
ref|NP_223550.1|  (NC_000921) putative [Helicobacter pylori ...    40  0.005

>ref|NP_207796.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||E64645 hypothetical protein HP1005 - Helicobacter pylori (strain 26695)
 gb|AAD08060.1| (AE000609) H. pylori predicted coding region HP1005 [Helicobacter
           pylori 26695]
          Length = 104

 Score =  209 bits (533), Expect = 4e-54
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MSNIITDYSQYNEKQLHNFLNSIEKQLLKAERDKNKAIKKIQECELQERMIRQVLAQKHS 60
           MSNIITDYSQYNEKQLHNFLNSIEKQLLKAERDKNKAIKKIQECELQERMIRQVLAQKHS
Sbjct: 1   MSNIITDYSQYNEKQLHNFLNSIEKQLLKAERDKNKAIKKIQECELQERMIRQVLAQKHS 60

Query: 61  QEKEPTPSLLNTIASKDDPEYDVSFGDFNDFLQIAKQERERHNA 104
           QEKEPTPSLLNTIASKDDPEYDVSFGDFNDFLQIAKQERERHNA
Sbjct: 61  QEKEPTPSLLNTIASKDDPEYDVSFGDFNDFLQIAKQERERHNA 104



>ref|NP_223550.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||C71883 hypothetical protein jhp0832 - Helicobacter pylori (strain J99)
 gb|AAD06412.1| (AE001512) putative [Helicobacter pylori J99]
          Length = 95

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 19/52 (36%), Positives = 36/52 (68%), Gaps = 7/52 (13%)

Query: 7  DYSQYNEKQLHNFLNSIEKQLLKAERDKNKAIKKIQECELQERMIRQVLAQK 58
          DY++Y++KQL NFLNSI+ +       + +A++K++E + Q++ I++ L  K
Sbjct: 8  DYTKYSQKQLFNFLNSIKAK-------QKRALEKLKEIQTQKQRIKKALQFK 52



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.312    0.129    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,373,817
Number of Sequences: 1026957
Number of extensions: 2050676
Number of successful extensions: 8922
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8921
Number of HSP's gapped (non-prelim): 2
length of query: 104
length of database: 324,149,939
effective HSP length: 80
effective length of query: 24
effective length of database: 241,993,379
effective search space: 5807841096
effective search space used: 5807841096
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 90 (39.3 bits)