BLAST against PDB protein database : Identity => 90-100 , 7 records

Record 1 :
OrfIDStartStopStrandLengthSequencePIDProduct
HP0243
Genbank TIGR
252706
252272
 -
144
MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLS
EAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQ
AHLA

15644871
neutrophil activating protein (napA) (bacterioferritin)

Blast result :
Best_HitE_valueAlign_residueIdentityAlignBLAST_result
 pdb|1JI4|A Chain A, Nap Protein From Helicobacter Pylori
 pdb|1JI4|B Chain B, Nap Protein From Helicobacter Pylori
 pdb|1JI4|C Chain C, Nap Protein From Helicobacter Pylori
 pdb|1JI4|D Chain D, Nap Protein From Helicobacter Pylori
 pdb|1JI4|E Chain E, Nap Protein From Helicobacter Pylori
 pdb|1JI4|F Chain F, Nap Protein From Helicobacter Pylori
 pdb|1JI4|G Chain G, Nap Protein From Helicobacter Pylori
 pdb|1JI4|H Chain H, Nap Protein From Helicobacter Pylori
 pdb|1JI4|I Chain I, Nap Protein From Helicobacter Pylori
 pdb|1JI4|J Chain J, Nap Protein From Helicobacter Pylori
 pdb|1JI4|K Chain K, Nap Protein From Helicobacter Pylori
 pdb|1JI4|L Chain L, Nap Protein From Helicobacter Pylori
          
 2e-80

 144/144
100
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Record 2 :
OrfIDStartStopStrandLengthSequencePIDProduct
HP0336
Genbank TIGR
349652
349236
 +
138
MVGGGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENG
KYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNNY

15644964
hypothetical protein

Blast result :
Best_HitE_valueAlign_residueIdentityAlignBLAST_result
 pdb|1KLX|A Chain A, Helicobacter Pylori Cysteine Rich Protein B (Hcpb)
          
 3e-79

 138/138
100
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Record 3 :
OrfIDStartStopStrandLengthSequencePIDProduct
HP0072
Genbank TIGR
77236
75527
 -
569
MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHDYTIYGEELKFGGGKTLREGMSQSNNPSKEELDLII
TNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFI
SPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLAKGNASNDASLADQ
IEAGAIGFKIHEDWGTTPSAINHALDVADKYDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGG
GHAPDIIKVAGEHNILPASTNPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTL
HDMGIFSITSSDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGIS
EYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGGFIALSQMGDANASIPTPQPVYYREMFAHHGKAKYDAN
ITFVSQAAYDKGIKEELGLERQVLPVKNCRNITKKDMQFNDTTAHIEVNPETYHVFVDGKEVTSKPANKV
SLAQLFSIF

15644702
urease beta subunit (urea amidohydrolase) (ureB)

Blast result :
Best_HitE_valueAlign_residueIdentityAlignBLAST_result
 pdb|1E9Z|B Chain B, Crystal Structure Of Helicobacter Pylori Urease
          
 0.0

 565/569
99
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Record 4 :
OrfIDStartStopStrandLengthSequencePIDProduct
HP0073
Genbank TIGR
77956
77240
 -
238
MKLTPKELDKLMLHYAGELAKKRKEKGIKLNYVEAVALISAHIMEEARAGKKTAAELMQEGRTLLKPDDV
MDGVASMIHEVGIEAMFPDGTKLVTVHTPIEANGKLVPGELFLKNEDITINEGKKAVSVKVKNVGDRPVQ
IGSHFHFFEVNRCLDFDREKTFGKRLDIASGTAVRFEPGEEKSVELIDIGGNRRIFGFNALVDRQADNES
KKIALHRAKERGFHGAKSDDNYVKTIKE

15644703
urease alpha subunit (ureA) (urea amidohydrolase)

Blast result :
Best_HitE_valueAlign_residueIdentityAlignBLAST_result
 pdb|1E9Y|A Chain A, Crystal Structure Of Helicobacter Pylori Urease In Complex
           With Acetohydroxamic Acid
 pdb|1E9Z|A Chain A, Crystal Structure Of Helicobacter Pylori Urease
          
 e-134

 237/238
99
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Record 5 :
OrfIDStartStopStrandLengthSequencePIDProduct
HP0525
Genbank TIGR
553464
552472
 -
330
MTEDRLSAEDKKFLEVERALKEAALNPLRHATEELFGDFLKMENITEICYNGNKVVWVLKNNGEWQPFDV
RDRKAFSLSRLMHFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTY
PHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEI
VFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEA
FIRLANMSSSNSAARNIKFESLIEGFKDLIDMIVHINHHKQCDEFYIKHR

15645151
virB11 homolog

Blast result :
Best_HitE_valueAlign_residueIdentityAlignBLAST_result
 pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter Pylori Atpase,
           Hp0525, In Complex With Adp
 pdb|1G6O|B Chain B, Crystal Structure Of The Helicobacter Pylori Atpase,
           Hp0525, In Complex With Adp
          
 0.0

 324/330
98
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Record 6 :
OrfIDStartStopStrandLengthSequencePIDProduct
HP1161
Genbank TIGR
1227441
1226947
 -
164
MGKIGIFFGTDSGNAEAIAEKISKAIGNAEVVDVAKASKEQFNSFTKVILVAPTAGAGDLQTDWEDFLGT
LEASDFATKTIGLVGLGDQDTYSETFAEGIFHIYEKAKAGKVVGQTPTDGYHFEASKAVEGGKFVGLVID
EDNQDDLTDERISKWVEQVKGSFA

15645775
flavodoxin (fldA)

Blast result :
Best_HitE_valueAlign_residueIdentityAlignBLAST_result
 pdb|1FUE|A Chain A, Flavodoxin From Helicobacter Pylori
          
 5e-87

 157/163
96
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Record 7 :
OrfIDStartStopStrandLengthSequencePIDProduct
HP0105
Genbank TIGR
113295
112828
 -
155
MKTPKMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRN
HASYVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAKDLA
RAFLDKRAEWSEVGV

15644735
conserved hypothetical protein
Autoinducer-2 synthase

Blast result :
Best_HitE_valueAlign_residueIdentityAlignBLAST_result
 pdb|1J6X|B Chain B, Crystal Structure Of Helicobacter Pylori Luxs
 pdb|1J6X|A Chain A, Crystal Structure Of Helicobacter Pylori Luxs
          
 1e-80

 140/151
92
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